Dynamics of supercoiled and linear pBluescript II SK(+) phagemids probed with a long-lifetime metal-ligand complex

Journal of Biochemistry and Molecular Biology

Volumn 38, Issue 1, 2005, Pages 104-110

  Jung, Sook Kang ^a   Byeng, Wha Son ^b   Hong, Dae Choi ^c   Ji, Hye Yoon ^a   Woo, Sung Son ^a  

^a Pusan National University   (South Korea)

^b Pukyong National University   (South Korea)

^c Dong Eui University   (South Korea)

Author keywords

Bending and torsional dynamics; Light emitting diode; Long lifetime metal ligand complex; Supercoiled and linear pBluescript II SK(+)

Indexed keywords

LIGAND; METAL; ORGANOMETALLIC COMPOUND; RUTHENIUM;

ARTICLE; CHEMISTRY; DNA SUPERCOILING; ESCHERICHIA COLI; FLUORESCENCE POLARIZATION; GENE VECTOR; METABOLISM; MOLECULAR PROBE; PLASMID;

DNA, SUPERHELICAL; ESCHERICHIA COLI; FLUORESCENCE POLARIZATION; GENETIC VECTORS; LIGANDS; METALS; MOLECULAR PROBES; ORGANOMETALLIC COMPOUNDS; PLASMIDS; RUTHENIUM;

EID: 21244446703     PISSN: 12258687     EISSN: 12258687     Source Type: Journal    
DOI: None     Document Type: Article

References (27)

1. Badea, M. G. and Brand, L. (1979) Time-resolved fluorescence measurements. Methods Enzymol. 61, 378-425.
2. Chirico, G. and Baldini, G. (1996) Rotational diffusion and internal motions of circular DNA. II. Depolarized photon correlation spectroscopy. J. Chem. Phys. 104, 6020-6026.
3. DeGraff, B. A. and Demas, J. N. (1994) Direct measurement of rotational correlation times of luminescent ruthenium(II) molecular probes by differential polarized phase fluorometry. J. Phys. Chem. 98, 12478-12480.
4. Fishman, D. M. and Patterson, G. D. (1996) Light scattering studies of supercoiled and nicked DNA. Biopolymers 38, 535-552.
5. 2+. J. Am. Chem. Soc. 112, 4960-4962.
6. Gratton, E., Limkeman, M., Lakowicz, J. R., Maliwal, B. P., Cherek, H. and Laczko, G. (1984) Resolution of mixtures of fluorophores using variable-frequency phase and modulation data. Biophys. J. 46, 479-486.
7. Haugen, G. R. and Lytle, F. E. (1981) Quantitation of fluorophores in solution by pulsed laser excitation of time-filtered detection. Anal. Chem. 53, 1554-1559.
8. + luminescence: dependence on DNA sequences and groove-binding agents. Inorg. Chem., 37, 29-34.
9. Jenkin, Y., Friedman, A. E., Turro, N. J. and Barton, J. K. (1992) Characterization of dipyridophenazine complexes of ruthenium(II): The light switch effect as a function of nucleic acid sequence and conformation. Biochemistry 31, 10809-10816.
10. Kang, J. S., Abugo, O. O. and Lakowicz, J. R. (2002a) Dynamics of supercoiled and linear pTZ18U plasmids observed with a long-lifetime metal-ligand complex. Biopolymers 67, 121-128.
11. Kang, J. S., Abugo, O. O. and Lakowicz, J. R. (2002b) Dynamics of supercoiled and relaxed pTZ18U plasmids probed with a long-lifetime metal-ligand complex. J. Biochem. Mol. Biol. 35, 389-394.
12. Kang, J. S. and Kostov, Y. (2002) Ratiometric pH measurements using LysoSensor DND-192. J. Biochem. Mol. Biol. 35, 384-388.
13. Kang, J. S. and Lakowicz, J. R. (2001) Fluorescence resonance energy transfer in calf thymus DNA from a long-lifetime metal-ligand complex to nile blue. J. Biochem. Mol. Biol. 34, 551-558.
14. Kang, J. S., Piszczek, G. and Lakowicz, J. R. (2002c) High-molecular-weight protein hydrodynamics studied with a long-lifetime metal-ligand complex. Biochim. Biophys. Acta 1597, 221-228.
15. Lakowicz, J. R. (1999) Principles of Fluorescence Spectroscopy, pp. 98-101, Kluwer Academic/Plenum Publishers, New York, USA.
16. Lakowicz, J. R., Cherek, H., Kusba, J., Gryczinski, I. and Johnson, M. L. (1993) Review of fluorescence anisotropy decay analysis by frequency-domain fluorescence spectroscopy. J. Fluorescence 3, 103-116.
17. Lakowicz, J. R. and Gryczinski, I. (1991) Frequency-domain fluorescence spectroscopy; in Topics in Fluorescence Spectroscopy, Volume 1, Techniques, Lakowicz, J. R. (ed.), pp. 293-355, Plenum Press, New York, USA.
18. Lakowicz, J. R., Gryczinski, I., Piszczek, G., Tolosa, L., Nair, R., Johnson, M. L. and Nowaczyk, K. (2000) Microsecond dynamics of biological molecules. Methods Enzymol. 323, 473-509.
19. Lakowicz, J. R., Laczko, G., Cherek, H., Gratton, E. and Limkeman, M. (1984) Analysis of fluorescence decay kinetics from variable-frequency phase-shift and modulation data. Biophys. J. 46, 463-477.
20. Lakowicz, J. R., Malak, H., Gryczynski, I., Castellano, F. N. and Meyer, G. J. (1995) DNA dynamics observed with long lifetime metal-ligand complexes. Biospectroscopy 1, 163-168.
21. Lakowicz, J. R., Piszczek, G. and Kang, J. S. (2001) On the possibility of long-wavelength long-lifetime high-quantum yield luminophores. Anal. Biochem. 288, 62-75.
22. Langowski, J. and Giesen, U. (1989) Configurational and dynamic properties of different length superhelical DNAs measured by dynamic light scattering. Biophys. Chem. 34, 9-18.
23. Langowski, J., Kremer, W. and Kapp, U. (1992) Dynamic light scattering for study of solution conformation and dynamics of superhelical DNA. Methods Enzymol. 211, 430-448.
24. Malak, H., Gryczinski, I., Lakowicz, J. R., Meyers, G. J. and Castellano, F. N. (1997) Long-lifetime metal-ligand complexes as luminescent probes for DNA. J. Fluorescence 7, 107-112.
25. Murphy, C. J. and Barton, J. K. (1993) Ruthenium complexes as luminescent reporters of DNA. Methods Enzymol. 226, 576-594.
26. Schurr, J. M., Fujimoto, B. S., Wu, P. and Song, L. (1992) Fluorescence studies of nucleic acids: dynamics, rigidities, and structures; in Topics in Fluorescence Spectroscopy, Volume 3, Biochemical Applications, Lakowicz, J. R. (ed.), pp. 137-229, Plenum Press, New York, USA.
27. Terpetschnig, E., Szmacinski, H. and Lakowicz, J. R. (1997) Long-lifetime metal-ligand complexes as probes in biophysics and clinical chemistry. Methods Enzymol. 278, 295-321.