Finding common RNA secondary structures from RNA sequences

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 1645, Issue , 1999, Pages 258-269

  Wang, Zhuozhi ^a   Zhang, Kaizhong ^a  

^a UNIVERSITY OF WESTERN ONTARIO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 21044443104     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/3-540-48452-3_19     Document Type: Conference Paper

References (7)

1. S. Y. Le, K. Zhang, and J.V. Maizel, Jr., ‘A method for predicting common structures of homologous RNAs’, Computers and Biomedical Research, 128, pp.53-66, 1995.
2. S. Y. Le and M. Zuker, ‘Common structure of the 5 0 non-coding RNA in en- teroviruses and Rhinovirusws - Thermodynamical stability and statistical significance’, J. Mol. Biol., 216, pp.729-741, 1990.
3. Waterman, M.S. Eds., ‘Mathematical methods for DNA sequence’, CRC Press, Boca Raton, FL 1989.
4. A.L. Wiliams and I. Tinoco, Jr., ‘A dynamic programming algorithm for finding alternate RNA secondary structures’, Nucleic Acids Research, 14, pp.199-315, 1986.
5. M. Zuker, ‘On finding all suboptimal foldings from of an RNA molecule’, Science 244, pp.48-52, 1989.
6. M. Zuker and D. Sankoff, ‘RNA secondary structure and their prediction’, Bull. Math. Biol. 46, pp.591-621, 1984.
7. M. Zuker and P. Stiegler, ‘Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information’, Nucleic Acid Res. 9, pp.133-148, 1981.