메뉴 건너뛰기




Volumn 33, Issue 10, 2005, Pages 3381-3389

Inferring the connectivity of a regulatory network from mRNA quantification in Synechocystis PCC6803

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; SIGMA FACTOR; BACTERIAL PROTEIN;

EID: 20844462366     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gki654     Document Type: Article
Times cited : (17)

References (26)
  • 1
    • 0026612797 scopus 로고
    • The sigma 70 family: Sequence conservation and evolutionary relationships
    • Lonetto,M., Gribskov,M. and Gross,C.A. (1992) The sigma 70 family: sequence conservation and evolutionary relationships. J. Bacteriol. 174, 3843-3849.
    • (1992) J. Bacteriol. , vol.174 , pp. 3843-3849
    • Lonetton, M.1    Gribskov, M.2    Gross, C.A.3
  • 2
    • 0024728119 scopus 로고
    • Expression of sigma 54 (ntrA)-dependent genes is probably united by a common mechanism
    • Kustu,S., Santero,E., Keener,J., Popham,D. and Weiss,D. (1989) Expression of sigma 54 (ntrA)-dependent genes is probably united by a common mechanism. Microbiol. Rev., 53, 367-376.
    • (1989) Microbiol. Rev. , vol.53 , pp. 367-376
    • Kustu, S.1    Santero, E.2    Keener, J.3    Popham, D.4    Weiss, D.5
  • 3
    • 0024841943 scopus 로고
    • Nucleotide sequence of katF of Escherichia coli suggests KatF protein is a novel sigma transcription factor
    • Mulvey,M.R. and Loewen,P.C. (1989) Nucleotide sequence of katF of Escherichia coli suggests KatF protein is a novel sigma transcription factor. Nucleic Acids Res., 17, 9979-9991.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 9979-9991
    • Mulvey, M.R.1    Loewen, P.C.2
  • 4
    • 0030034307 scopus 로고    scopus 로고
    • Heat-shock and general stress response in Bacillus subtilis
    • Hecker,M., Schumann,W. and Volker,U. (1996) Heat-shock and general stress response in Bacillus subtilis. Mol. Microbiol., 19 417-428.
    • (1996) Mol. Microbiol. , vol.19 , pp. 417-428
    • Hecker, M.1    Schumann, W.2    Volker, U.3
  • 5
    • 0030924138 scopus 로고    scopus 로고
    • A transcriptional activator, FleQ, regulates mucin adhesion and flagellar gene expression in Pseudomonas aeruginosa in a cascade manner
    • Arora,S.K., Ritchings,B.W., Almira,E.C., Lory,S. and Ramphal,R. (1997) A transcriptional activator, FleQ, regulates mucin adhesion and flagellar gene expression in Pseudomonas aeruginosa in a cascade manner. J. Bacteriol., 179, 5574-5581.
    • (1997) J. Bacteriol. , vol.179 , pp. 5574-5581
    • Arora, S.K.1    Ritchings, B.W.2    Almira, E.C.3    Lory, S.4    Ramphal, R.5
  • 6
    • 0036714331 scopus 로고    scopus 로고
    • Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase
    • Hengge-Aronis,R. (2002) Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase. Microbiol. Mol. Biol. Rev., 66, 373-395.
    • (2002) Microbiol. Mol. Biol. Rev. , vol.66 , pp. 373-395
    • Hengge-Aronis, R.1
  • 7
    • 0032981092 scopus 로고    scopus 로고
    • The role of an alternative sigma factor in motility and pilus formation in the cyanobacterium Synechocystis sp. strain PCC6803
    • Bhaya,D., Watanabe,N., Ogawa,T. and Grossman,A.R. (1999) The role of an alternative sigma factor in motility and pilus formation in the cyanobacterium Synechocystis sp. strain PCC6803. Proc. Natl Acad. Sci. USA, 96, 3188-3193.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 3188-3193
    • Bhaya, D.1    Watanabe, N.2    Ogawa, T.3    Grossman, A.R.4
  • 8
    • 0036285605 scopus 로고    scopus 로고
    • Roles for sigma factors in global circadian regulation of the cyanobacterial genome
    • Nair,U., Ditty,J.L., Min,H. and Golden,S.S. (2002) Roles for sigma factors in global circadian regulation of the cyanobacterial genome. J. Bacteriol., 184, 3530-3538.
    • (2002) J. Bacteriol. , vol.184 , pp. 3530-3538
    • Nair, U.1    Ditty, J.L.2    Min, H.3    Golden, S.S.4
  • 9
    • 0030606607 scopus 로고    scopus 로고
    • Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
    • Kaneko,T., Sato,S., Kotani,H., Tanaka,A., Asamizu,E., Nakamura,Y., Miyajima,N., Hirosawa,M., Sugiura,M., Sasamoto,S. et al. (1996) Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res., 3, 109-136.
    • (1996) DNA Res. , vol.3 , pp. 109-136
    • Kaneko, T.1    Sato, S.2    Kotani, H.3    Tanaka, A.4    Asamizu, E.5    Nakamura, Y.6    Miyajima, N.7    Hirosawa, M.8    Sugiura, M.9    Sasamoto, S.10
  • 10
    • 0035157654 scopus 로고    scopus 로고
    • Nitrogen-regulated group 2 sigma factor from Synechocystis sp. strain PCC 6803 involved in survival under nitrogen stress
    • Muro-Pastor,A.M., Herrero,A. and Flores,E. (2001) Nitrogen-regulated group 2 sigma factor from Synechocystis sp. strain PCC 6803 involved in survival under nitrogen stress. J. Bacteriol., 183 1090-1095.
    • (2001) J. Bacteriol. , vol.183 , pp. 1090-1095
    • Muro-Pastor, A.M.1    Herrero, A.2    Flores, E.3
  • 11
    • 0242541757 scopus 로고    scopus 로고
    • Antagonistic dark/light-induced SigB/SigD, group 2 sigma factors, expression through redox potential and their roles in cyanobacteria
    • Imamura,S., Asayama,M., Takahashi,H., Tanaka,K., Takahashi,H. and Shirai,M. (2003) Antagonistic dark/light-induced SigB/SigD, group 2 sigma factors, expression through redox potential and their roles in cyanobacteria. FEBS Lett., 554, 357-362.
    • (2003) FEBS Lett. , vol.554 , pp. 357-362
    • Imamura, S.1    Asayama, M.2    Takahashi, H.3    Tanaka, K.4    Takahashi, H.5    Shirai, M.6
  • 12
    • 4544375619 scopus 로고    scopus 로고
    • SigC, the group 2 sigma factor of RNA polymerase, contributes to the late-stage gene expression and nitrogen promoter recognition in the cyanobacterium Synechocystis sp. strain PCC 6803
    • Asayama,M., Imamura,S., Yoshihara,S., Miyazaki,A., Yoshida,N., Sazuka,T., Kaneko,T., Ohara,O., Tabata,S., Osanai,T. et al. (2004) SigC, the group 2 sigma factor of RNA polymerase, contributes to the late-stage gene expression and nitrogen promoter recognition in the cyanobacterium Synechocystis sp. strain PCC 6803. Biosci. Biotechnol. Biochem., 68, 477-487.
    • (2004) Biosci. Biotechnol. Biochem. , vol.68 , pp. 477-487
    • Asayama, M.1    Imamura, S.2    Yoshihara, S.3    Miyazaki, A.4    Yoshida, N.5    Sazuka, T.6    Kaneko, T.7    Ohara, O.8    Tabata, S.9    Osanai, T.10
  • 14
    • 0037309151 scopus 로고    scopus 로고
    • Expression of primary sigma factor (PSF) and PSF-like sigma factors in the cyanobacterium Synechocystis sp. strain PCC 6803
    • Tuominen,I., Tyystjarvi,E. and Tyystjarvi,T. (2003) Expression of primary sigma factor (PSF) and PSF-like sigma factors in the cyanobacterium Synechocystis sp. strain PCC 6803. J. Bacteriol. 185, 1116-1119.
    • (2003) J. Bacteriol. , vol.185 , pp. 1116-1119
    • Tuominen, I.1    Tyystjarvi, E.2    Tyystjarvi, T.3
  • 15
    • 0031466505 scopus 로고    scopus 로고
    • Expression of two alternative sigma factors of Synechococcus sp. strain PCC 7002 is modulated by carbon and nitrogen stress
    • Caslake,L.F., Gruber,T.M. and Bryant,D.A. (1997) Expression of two alternative sigma factors of Synechococcus sp. strain PCC 7002 is modulated by carbon and nitrogen stress. Microbiology, 143, 3807-3818.
    • (1997) Microbiology , vol.143 , pp. 3807-3818
    • Caslake, L.F.1    Gruber, T.M.2    Bryant, D.A.3
  • 16
    • 0032756244 scopus 로고    scopus 로고
    • Specificity crosstalk among group 1 and group 2 sigma factors in the cyanobacterium Synechococcus sp. PCC7942: In vitro specificity and a phylogenetic analysis
    • Goto-Seki,A., Shirokane,M., Masuda,S., Tanaka,K. and Takahashi,H. (1999) Specificity crosstalk among group 1 and group 2 sigma factors in the cyanobacterium Synechococcus sp. PCC7942: In vitro specificity and a phylogenetic analysis. Mol. Microbiol., 34 473-484.
    • (1999) Mol. Microbiol. , vol.34 , pp. 473-484
    • Goto-Seki, A.1    Shirokane, M.2    Masuda, S.3    Tanaka, K.4    Takahashi, H.5
  • 17
  • 18
    • 0038048325 scopus 로고    scopus 로고
    • Inferring genetic networks and identifying compound mode of action via expression profiling
    • Gardner,T.S., di Bernardo,D., Lorenz,D. and Collins,J.J. (2003) Inferring genetic networks and identifying compound mode of action via expression profiling. Science, 301, 102-105.
    • (2003) Science , vol.301 , pp. 102-105
    • Gardner, T.S.1    di Bernardo, D.2    Lorenz, D.3    Collins, J.J.4
  • 20
    • 0033967460 scopus 로고    scopus 로고
    • The circadian clock of cyanobacteria
    • Kondo,T. and Ishiura,M. (2000) The circadian clock of cyanobacteria. Bioessays, 22, 10-15.
    • (2000) Bioessays , vol.22 , pp. 10-15
    • Kondo, T.1    Ishiura, M.2
  • 21
    • 0037805675 scopus 로고    scopus 로고
    • Biochemical properties of CikA, an unusual phytochrome-like histidine protein kinase that resets the circadian clock in Synechococcus elongatus PCC 7942
    • Mutsuda,M., Michel,K.P., Zhang,X., Montgomery,B.L. and Golden,S.S. (2003) Biochemical properties of CikA, an unusual phytochrome-like histidine protein kinase that resets the circadian clock in Synechococcus elongatus PCC 7942. J. Biol. Chem., 278, 19102-19110.
    • (2003) J. Biol. Chem. , vol.278 , pp. 19102-19110
    • Mutsuda, M.1    Michel, K.P.2    Zhang, X.3    Montgomery, B.L.4    Golden, S.S.5
  • 22
    • 0034604449 scopus 로고    scopus 로고
    • CikA, a bacteriophytochrome that resets the cyanobacterial circadian clock
    • Schmitz,O., Katayama,M., Williams,S.B., Kondo,T. and Golden,S.S. (2000) CikA, a bacteriophytochrome that resets the cyanobacterial circadian clock. Science, 289, 765-768.
    • (2000) Science , vol.289 , pp. 765-768
    • Schmitz, O.1    Katayama, M.2    Williams, S.B.3    Kondo, T.4    Golden, S.S.5
  • 23
    • 0034646509 scopus 로고    scopus 로고
    • A KaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria
    • Iwasaki,H., Williams,S.B., Kitayama,Y., Ishiura,M., Golden,S.S. and Kondo,T. (2000) A KaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria. Cell, 101, 223-233.
    • (2000) Cell , vol.101 , pp. 223-233
    • Iwasaki, H.1    Williams, S.B.2    Kitayama, Y.3    Ishiura, M.4    Golden, S.S.5    Kondo, T.6
  • 24
    • 19744362568 scopus 로고    scopus 로고
    • Crosstalk regulation among group 2-Sigma factors in Synechocystis PCC6803
    • Lemeille,S., Geiselmann,J. and Latifi,A. (2005) Crosstalk regulation among group 2-Sigma factors in Synechocystis PCC6803. BMC Microbiol., 5, 18.
    • (2005) BMC Microbiol. , vol.5 , pp. 18
    • Lemeille, S.1    Geiselmann, J.2    Latifi, A.3
  • 25
    • 0018409915 scopus 로고
    • Genetics assignments, strain histories and properties of pure cultures of cyanobacteria
    • Rippka,R., Deruelles,J., Waterbury,J.B., Herman,M. and Stanier,R.Y. (1979) Genetics assignments, strain histories and properties of pure cultures of cyanobacteria. J. Gen. Microbiol., 111, 1-61.
    • (1979) J. Gen. Microbiol. , vol.111 , pp. 1-61
    • Rippka, R.1    Deruelles, J.2    Waterbury, J.B.3    Herman, M.4    Stanier, R.Y.5
  • 26
    • 0001287271 scopus 로고    scopus 로고
    • Regression Shrinkage and Selection via the Lasso
    • Tibshirani,R. (1996) Regression Shrinkage and Selection via the Lasso. J. R. Stat. Soc. B., 58, 267-288.
    • (1996) J. R. Stat. Soc. B. , vol.58 , pp. 267-288
    • Tibshirani, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.