Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 24, 2005, Pages 8591-8596

  Balhoff, James P ^a   Wray, Gregory A ^a  

^a DUKE UNIVERSITY   (United States)

Author keywords

Cis regulatory evolution; Population genetics; Transcription

Indexed keywords

TRANSCRIPTION FACTOR;

ARTICLE; ENDO16 GENE; GENE; GENE FUNCTION; GENE INSERTION; GENE SEGREGATION; GENETIC CONSERVATION; GENETIC VARIABILITY; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; REGULATORY SEQUENCE; REPRESSOR GENE; SEA URCHIN; SEQUENCE ANALYSIS; SPECIES DIVERSITY;

NASA DISCIPLINE EVOLUTIONARY BIOLOGY; NON-NASA CENTER;

ANIMALS; BASE SEQUENCE; BINDING SITES; CELL ADHESION MOLECULES; CLONING, MOLECULAR; DNA PRIMERS; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS (GENETICS); PROTEINS; SELECTION (GENETICS); SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; STRONGYLOCENTROTUS PURPURATUS; VARIATION (GENETICS);

ECHINOIDEA;

EID: 20844434817     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0409638102     Document Type: Article

References (30)

1. Carroll, S. B. (2000) Cell 101, 577-580.
2. Carroll, S. B., Grenier, J. K. & Weatherbee, S. D. (2004) From DNA to Diversity: Molecular Genetics and the Evolution of Animal Design (Blackwell Scientific, Malden, MA).
3. Davidson, E. H. (2001) Genomic Regulatory Systems: Development and Evolution (Academic, San Diego).
4. Wray, G. A., Hahn, M. W., Abouheif, E., Balhoff, J. P., Pizer, M., Rockman, M. V. & Romano, L. A. (2003) Mol. Biol. Evol. 20, 1377-1419.
5. Cliften, P., Sudarsanam, P., Desikan, A., Fulton, L., Fulton, B., Majors, J., Waterston, R., Cohen, B. A. & Johnston, M. (2003) Science 301, 71-76.
6. Stormo, G. D. (2000) Bioinformatics 16, 16-23.
7. Arnone, M. I. & Davidson, E. H. (1997) Development (Cambridge, U.K.) 124, 1851-1864.
8. Yuh, C.-H. & Davidson, E. H. (1996) Development (Cambridge, U.K.) 122, 1069-1082.
9. Yuh, C.-H., Ransick, A., Martinez, P., Britten, R. J. & Davidson, E. H. (1994) Mech. Dev. 47, 165-186.
10. Yuh, C.-H., Bolouri, H. & Davidson, E. H. (2001) Development (Cambridge, U.K.) 128, 617-629.
11. Yuh, C.-H., Bolouri, H. & Davidson, E. H. (1998) Science 279, 1896-1902.
12. Ransick, A., Ernst, S., Britten, R. J. & Davidson, E. H. (1993) Mech. Dev. 42, 117-124.
13. Thompson, J., Gibson, T., Plewniak, F., Jeanmougin, F. & Higgins, D. (1997) Nucleic Acids Res. 25, 4876-4882.
14. Maddison, D. & Maddison, W. (2000) MACCLADE (Sinauet Associates, Sunderland, MA), Version 4.0.
15. Rozas, J. & Rozas, R. (1999) Bioinformatics 15, 174-175.
16. Britten, R. J., Rowen, L., Williams, J. & Cameron, R. A. (2003) Proc. Natl. Acad. Sci. USA 100, 4661-4665.
17. Tajima, F. (1983) Genetics 105, 437-460.
18. Watterson, G. A. (1975) Theor. Popul. Biol. 7, 256-276.
19. Zeller, R. W., Griffith, J. D., Moore, J. G., Kirchhamer, C. V., Britten, R. J. & Davidson, E. H. (1995) Proc. Natl. Acad. Sci. USA 92, 2989-2993.
20. McDonald, J. H. & Kreitman, M. (1991) Nature 351, 652-654.
21. Romano, L. A. & Wray, G. A. (2003) Development (Cambridge, U.K.) 130, 4187-4199.
22. Dayal, S., Kiyama, T., Villinski, J. T., Zhang, N., Liang, S. & Klein, W. H. (2004) Dev. Biol. 273, 436-453.
23. Kidwell, M. G. & Lisch, D. (1997) Proc. Natl. Acad. Sci. USA 94, 7704-7711.
24. Britten, R. J., Cetta, A. & Davidson, E. H. (1978) Cell 15, 1175-1186.
25. Macdonald, S. J. & Long, A. D. (2005) Mol. Biol. Evol. 22, 607-619,
26. Phinchongsakuldit, J., MacArthur, S. & Brookfield, J. F. (2004) Mol. Biol. Evol. 21, 348-363.
27. Ludwig, M. Z., Bergman, C., Patet, N. H. & Kreitman, M. (2000) Nature 403, 564-567.
28. Ludwig, M. Z., Patel, N. H. & Kreitman, M. (1998) Development (Cambridge, U.K.) 125, 949-958.
29. Charlesworth, B., Morgan, M. T. & Charlesworth, D. (1993) Genetics 134, 1289-1303.
30. Latchman, D. S. (1998) Eukaryotic Transcription Factors (Academic, San Diego).