Erratum: Crystallization and preliminary X-ray crystallographic analysis of extracellular giant hemoglobin from pogonophoran Oligobrachia mashikoi (Biochimica et Biophysica Acta - Proteins and Proteomics (2005) 1750 (173-176) DOI: 10.1016/j.bbapap.2005.05.009);Crystallization and preliminary X-ray crystallographic analysis of extracellular giant hemoglobin from pogonophoran Oligobrachia mashikoi

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1750, Issue 2, 2005, Pages 173-176

  Numoto, Nobutaka ^a,b   Nakagawa, Taro ^c   Kita, Akiko ^a   Sasayama, Yuichi ^c   Fukumori, Yoshihiro ^c   Miki, Kunio ^a,b  

^a KYOTO UNIVERSITY   (Japan)

^b RIKEN Harima Institute/SPring 8 ^*  (Japan)

^c KANAZAWA UNIVERSITY   (Japan)

Author keywords

Extracellular hemoglobin; Invertebrate; Oligobrachia mashikoi; Pogonophora; Sulfide binding

Indexed keywords

ACETIC ACID; GLOBIN; HEMOGLOBIN; MACROGOL 10000;

ARTICLE; CRYSTALLIZATION; DIFFUSION; MOLECULAR WEIGHT; NONHUMAN; PRECIPITATION; PRIORITY JOURNAL; SUPRAMOLECULAR CHEMISTRY; VAPOR; X RAY CRYSTALLOGRAPHY; X RAY DIFFRACTION;

INVERTEBRATA; OLIGOBRACHIA MASHIKOI; POGONOPHORA;

EID: 20644455116     PISSN: 15709639     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbapap.2006.01.001     Document Type: Erratum

References (29)

1. E.C. Southward Recent researches on the Pogonophora Oceanogr. Mar. Biol. Ann. Rev. 9 1971 193 220
2. 12C ratios in tissues of Pogonophora indicate unusual nutrition and metabolism Nature 293 1981 616 620
3. E.C. Southward Bacterial symbionts in Pogonophora J. Mar. Biol. Assoc. U.K. 62 1982 889 906
4. C.M. Young, E. Vázquez, A. Metaxas, and P.A. Tyler Embryology of vestimentiferan tube worms from deep-sea methane/sulphide seeps Nature 381 1996 514 516
5. E.C. Southward Development of the gut and segmentation of newly settled stages of Ridgeia (Vestimentifera): implications for relationship between Vestimentifera and Pogonophora J. Mar. Biol. Assoc. U.K. 68 1988 465 487
6. A. Matsuno, and Y. Sasayama A comparative study of body wall structures of a pogonophore and an annelid from a phylogenetic viewpoint Zool. Sci. 19 2002 695 701
7. S. Kojima, T. Hashimoto, M. Hasegawa, S. Murata, S. Ohta, H. Seki, and N. Okada Close phylogenetic relationship between Vestimentifera (tube worms) and Annelida revealed by the amino acid sequence of elongation factor-1α J. Mol. Evol. 37 1993 66 70
8. J.L. Boore, and W.M. Brown Mitochondrial genomes of Galathealinum, Helobdella, and Platynereis: sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa Mol. Biol. Evol. 17 2000 87 106
9. H. Felbeck, J.J. Childress, and G.N. Somero Calvin-Benson cycle and sulphide oxidation enzymes in animals from sulphide-rich habitats Nature 293 1981 291 293
10. H. Felbeck Chemoautotrophic potential of the hydrothermal vent tube worm Riftia pachyptila Jones (Vestimentifera) Science 213 1981 336 338
11. C.M. Cavanaugh, S.L. Gardiner, M.L. Jones, H.M. Jannasch, and J.B. Waterbury Prokaryotic cells in the hydrothermal vent tube worm Riftia pachyptila: possible chemoautotrophic symbionts Science 213 1981 340 342
12. F. Zal, F.H. Lallier, B.N. Green, S.N. Vinogradov, and A. Toulmond The multi-hemoglobin system of the hydrothermal vent tube worm Riftia pachyptila: II. Complete polypeptide chain composition investigated by maximum entropy analysis of mass spectra J. Biol. Chem. 271 1996 8875 8881
13. A.J. Arp, J.J. Childress, and R.D. Vetter The sulphide-binding protein in the blood of the vestimentiferan tube-worm Riftia pachyptila, is the extracellular hemoglobin J. Exp. Biol. 128 1987 139 158
14. 2S-binding site Biochem. J. 266 1990 221 225
15. F. Zal, E. Leize, F.H. Lallier, A. Toulmond, A. Van Dorsselaer, and J.J. Childress S-sulfohemoglobin and disulfide exchange: the mechanisms of sulfide binding by Riftia pachyptila hemoglobins Proc. Natl. Acad. Sci. U. S. A. 95 1998 8997 9002
16. J.F. Flores, C.R. Fisher, S.L. Carney, B.N. Green, J.K. Freytag, S.W. Schaeffer, and W.E. Royer Jr. Sulfide binding is mediated by zinc ions discovered in the crystal structure of a hydrothermal vent tubeworm hemoglobin Proc. Natl. Acad. Sci. U. S. A. 102 2005 2713 2718
17. R. Schmaljohann, and H.J. Flügel Methane-oxidizing bacteria in Pogonophora Sarsia 72 1987 91 98
18. R. Schmaljohann, E. Faber, M.J. Whiticar, and P.R. Dando Co-existence of methane- and sulphur-based endosymbioses between bacteria and invertebrates at a site in the Skagerrak Mar. Ecol., Prog. Ser. 61 1990 119 124
19. H.J. Yuasa, B.N. Green, T. Takagi, N. Suzuki, S.N. Vinogradov, and T. Suzuki Electrospray ionization mass spectrometric composition of the 400 kDa hemoglobin from the pogonophoran Oligobrachia mashikoi and the primary structures of three major globin chains Biochim. Biophys. Acta 1296 1996 235 244
20. W.E. Royer Jr., K. Strand, M. van Heel, and W.A. Hendrickson Structural hierarchy in erythrocruorin, the giant respiratory assemblage of annelids Proc. Natl. Acad. Sci. U. S. A. 97 2000 7107 7111
21. K. Strand, J.E. Knapp, B. Bhyravbhatla, and W.E. Royer Jr. Crystal structure of the hemoglobin dodecamer from Lumbricus erythrocruorin: allosteric core of giant annelid respiratory complexes J. Mol. Biol. 344 2004 119 134
22. Y. Sasayama, M. Matada, Y. Fukumori, M. Umebayashi, A. Matsuno, T. Nakagawa, and M. Imajima External morphology of the posterior end, the "opisthosoma", of the beard worm Oligobrachia mashikoi (Pogonophora) Zool. Sci. 20 2003 1411 1416
23. T. Nakagawa, S. Onoda, M. Kanemori, Y. Sasayama, and Y. Fukumori Purification, characterization and sequence analyses of the extracellular giant hemoglobin from Oligobrachia mashikoi Zool. Sci. 22 2005 283 291
24. J. Jancarik, and S.H. Kim Sparse matrix sampling: a screening method for crystallization of proteins J. Appl. Crystallogr. 24 1991 409 411
25. Z. Otwinowski, and W. Minor Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol. 276 1997 307 326
26. B.W. Matthews Solvent content of protein crystals J. Mol. Biol. 33 1968 491 497
27. J. Navaza AMoRe: an automated package for molecular replacement Acta Crystallogr., A 50 1994 157 163
28. A. Vagin, and A. Teplyakov MOLREP: an automated program for molecular replacement J. Appl. Crystallogr. 30 1997 1022 1025
29. C.R. Kissinger, D.K. Gehlhaar, and D.B. Fogel Rapid automated molecular replacement by evolutionary search Acta Crystallogr., D: Biol. Crystallogr. 55 1999 484 491