-
1
-
-
0141502007
-
Shotgun proteomics: Integrating technologies to answer biological questions
-
W.H. McDonald and J.R. Yates, 3rd, "Shotgun proteomics: Integrating technologies to answer biological questions," Curr. Opin. Mol. Ther., vol. 5, no. 3. pp. 302-309, 2003.
-
(2003)
Curr. Opin. Mol. Ther.
, vol.5
, Issue.3
, pp. 302-309
-
-
McDonald, W.H.1
Yates III, J.R.2
-
2
-
-
0031813130
-
Pfam: Multiple sequence alignments and HMM-profiles of protein domains
-
E.L. Sonnhammer, S.R. Eddy, E. Birney, A. Bateman, and R. Durbin, "Pfam: Multiple sequence alignments and HMM-profiles of protein domains," Nucleic Acids Res., vol. 26, no. 1, pp. 320-322, 1998.
-
(1998)
Nucleic Acids Res.
, vol.26
, Issue.1
, pp. 320-322
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Birney, E.3
Bateman, A.4
Durbin, R.5
-
3
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
A.G. Murzin, S.E. Brenner, T. Hubbard, and C. Chothia, "SCOP: A structural classification of proteins database for the investigation of sequences and structures," J. Mol. Biol., vol. 247, no. 4, pp. 536-540, 1995.
-
(1995)
J. Mol. Biol.
, vol.247
, Issue.4
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
4
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
D.N. Perkins, D.J.C. Pappin, D.M. Creagy, and J.S. Cottrell, "Probability-based protein identification by searching sequence databases using mass spectrometry data," Electrophoresis., vol. 20, no. 18, pp. 3551-3567, 1999.
-
(1999)
Electrophoresis
, vol.20
, Issue.18
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.C.2
Creagy, D.M.3
Cottrell, J.S.4
-
5
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
J.K. Eng, A.L. McCormack, and J.R. Yates III, "An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database," J. Am. Soc. Mass Spectrom., vol. 5, no. 11, pp. 976-989, 1994.
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, Issue.11
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates III, J.R.3
-
6
-
-
3042737683
-
Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics
-
K.A. Resing, K. Meyer-Arendt, A.M. Mendoza, L.D. Aveline-Wolf, K.R. Jonscher, K.G. Pierce, W.M. Old, H.T. Cheung, S. Russell, J.L. Wattawa, G.R. Goehle, R.D. Knight, and N.G. Ahn, "Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics," Anal. Chem., vol. 76, no. 13, pp. 3556-3568, 2004.
-
(2004)
Anal. Chem.
, vol.76
, Issue.13
, pp. 3556-3568
-
-
Resing, K.A.1
Meyer-Arendt, K.2
Mendoza, A.M.3
Aveline-Wolf, L.D.4
Jonscher, K.R.5
Pierce, K.G.6
Old, W.M.7
Cheung, H.T.8
Russell, S.9
Wattawa, J.L.10
Goehle, G.R.11
Knight, R.D.12
Ahn, N.G.13
-
7
-
-
0242478393
-
On the structure and function of bovine trypsinogen and trypsin
-
K.A. Walsh, D.L. Kauffman, K.S. Kumar, and H. Neurath, "On the structure and function of bovine trypsinogen and trypsin," Proc. Natl. Acad. Sci. USA, vol. 51, no. 2, pp. 301-308, 1964.
-
(1964)
Proc. Natl. Acad. Sci. USA
, vol.51
, Issue.2
, pp. 301-308
-
-
Walsh, K.A.1
Kauffman, D.L.2
Kumar, K.S.3
Neurath, H.4
-
8
-
-
3042818018
-
The International Protein Index: An integrated database for proteomics eexperiments
-
J. Kersey, J. Duarte, A. Williams, Y. Karavidopoulou, E. Birney, and R. Apweiler, "The International Protein Index: An integrated database for proteomics eexperiments," Proteomics, vol. 4, no. 7, pp. 1985-1988, 2004, 2001.
-
(2001)
Proteomics
, vol.4
, Issue.7
, pp. 1985-1988
-
-
Kersey, J.1
Duarte, J.2
Williams, A.3
Karavidopoulou, Y.4
Birney, E.5
Apweiler, R.6
-
9
-
-
0036616218
-
The protein data bank
-
U.M. Berman, T. Battistuz, T.N. Bhat, W.F. Bluhm, P.E. Bourne, K. Burkhardt, Z. Feng, G.L. Gilliland, L. Iype, S. Jain, P. Pagan, J. Marvin, D. Padilla, V. Ravichandran, B. Schneider, N. Thanki, H. Weissig, J.D. Westbrook, and C. Zardecki, "The Protein Data Bank," Acta. Crystallogr D. Biol. Crystallogr., vol. 58, pt. 6, no. 1. pp. 899-907, 2002.
-
(2002)
Acta Crystallogr. D. Biol. Crystallogr.
, vol.58
, Issue.1 PART 6
, pp. 899-907
-
-
Berman, U.M.1
Battistuz, T.2
Bhat, T.N.3
Bluhm, W.F.4
Bourne, P.E.5
Burkhardt, K.6
Feng, Z.7
Gilliland, G.L.8
Iype, L.9
Jain, S.10
Pagan, P.11
Marvin, J.12
Padilla, D.13
Ravichandran, V.14
Schneider, B.15
Thanki, N.16
Weissig, H.17
Westbrook, J.D.18
Zardecki, C.19
-
10
-
-
21744434413
-
-
[Online], Available: ftp://ftp.rcsb.org/pub/pdb
-
The Protein Data Bank (2004) [Online], Available: ftp://ftp.rcsb.org/ pub/pdb/
-
(2004)
The Protein Data Bank
-
-
-
11
-
-
84874647709
-
-
[Online]. Available: ftp:// ftp.ebi.ac.uk/pub/databasesrtPI
-
The International Protein Index (2004) [Online]. Available: ftp:// ftp.ebi.ac.uk/pub/databasesrtPI/
-
(2004)
The International Protein Index
-
-
-
12
-
-
2442649543
-
-
Cambridge, MA: O'Reilly
-
I. Korf, M. Yandell, and J. Bedell, BLAST - An Essential Guide to the Basic Local Alignment Search Tool, 1st ed. Cambridge, MA: O'Reilly, 2003.
-
(2003)
BLAST - An Essential Guide to the Basic Local Alignment Search Tool, 1st Ed.
-
-
Korf, I.1
Yandell, M.2
Bedell, J.3
-
13
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
J.D. Thompson, D.O. Higgins, and T.J. Gibson, "CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice," Nucleic Acids Rex., vol. 22. pp. 4673-4680, 1994.
-
(1994)
Nucleic Acids Rex.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.O.2
Gibson, T.J.3
-
14
-
-
20644432316
-
-
Online
-
ProShape Software (2005) [Online]. Available: http://csb.stanford.edu/ koehl/ProShape/
-
(2005)
ProShape Software
-
-
-
15
-
-
0032190305
-
Analytical shape computation of macromolecules: I. Molecular area and volume through alpha shape
-
J. Liang, H. Edelsbrunner, P. Fu, P.V. Sudhakar, and S. Subramaniam. "Analytical shape computation of macromolecules: I. Molecular area and volume through alpha shape," Proteins, vol. 33, no. 1. pp. 1-17, 1998.
-
(1998)
Proteins
, vol.33
, Issue.1
, pp. 1-17
-
-
Liang, J.1
Edelsbrunner, H.2
Fu, P.3
Sudhakar, P.V.4
Subramaniam, S.5
-
18
-
-
0031000626
-
Megakaryocytic differentiation induced by constitutive activation of mitogen-activated protein kinase kinase
-
A.M. Whalen, S.C. Galasinski, P.S. Shapiro, T.S. Nahreini, and N.G. Ahn, "Megakaryocytic differentiation induced by constitutive activation of mitogen-activated protein kinase kinase," Mol. Cell. Biol., vol. 17, no. 4, pp. 1947-1958, 1997.
-
(1997)
Mol. Cell. Biol.
, vol.17
, Issue.4
, pp. 1947-1958
-
-
Whalen, A.M.1
Galasinski, S.C.2
Shapiro, P.S.3
Nahreini, T.S.4
Ahn, N.G.5
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