-
1
-
-
0036848631
-
Induction and experience-dependent consolidation of stable long-term potentiation lasting months in the hippocampus
-
Abraham WC, Logan B, Greenwood JM, Dragunow M. 2002. Induction and experience-dependent consolidation of stable long-term potentiation lasting months in the hippocampus. J. Neurosci. 22:9626-34
-
(2002)
J. Neurosci.
, vol.22
, pp. 9626-9634
-
-
Abraham, W.C.1
Logan, B.2
Greenwood, J.M.3
Dragunow, M.4
-
2
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JO, et al. 2000. The genome sequence of Drosophila melanogaster. Science 287:2185-95
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.O.5
-
3
-
-
12344323594
-
Conserved network motifs allow protein-protein interaction prediction
-
Albert I, Albert R. 2004. Conserved network motifs allow protein-protein interaction prediction. Bioinformatics 20:3346-52
-
(2004)
Bioinformatics
, vol.20
, pp. 3346-3352
-
-
Albert, I.1
Albert, R.2
-
4
-
-
0034721164
-
Error and attack tolerance of complex networks
-
Albert R, Jeong H, Barabasi AL. 2000. Error and attack tolerance of complex networks. Nature 406:378-82
-
(2000)
Nature
, vol.406
, pp. 378-382
-
-
Albert, R.1
Jeong, H.2
Barabasi, A.L.3
-
5
-
-
0037686112
-
The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster
-
Albert R, Othmer HG. 2003. The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster. J. Theor. Biol. 223:1-18
-
(2003)
J. Theor. Biol.
, vol.223
, pp. 1-18
-
-
Albert, R.1
Othmer, H.G.2
-
7
-
-
0031879114
-
Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells
-
Arkin A, Ross J, McAdams HH. 1998. Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. Genetics 149:1633-48
-
(1998)
Genetics
, vol.149
, pp. 1633-1648
-
-
Arkin, A.1
Ross, J.2
McAdams, H.H.3
-
8
-
-
4344715809
-
Comment on "Network motifs: Simple building blocks of complex networks" and "Superfamilies of evolved and designed networks"
-
Artzy-Randrup Y, Fleishman SJ, Ben-Tal N, Stone L. 2004. Comment on "Network motifs: simple building blocks of complex networks" and "Superfamilies of evolved and designed networks." Science 305:1107
-
(2004)
Science
, vol.305
, pp. 1107
-
-
Artzy-Randrup, Y.1
Fleishman, S.J.2
Ben-Tal, N.3
Stone, L.4
-
9
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabasi AL, Albert R. 1999. Emergence of scaling in random networks. Science 286:509-12
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabasi, A.L.1
Albert, R.2
-
10
-
-
4143118798
-
Signaling in small subcellular volumes. I. Stochastic and diffusion effects on individual pathways
-
Bhalla US. 2004. Signaling in small subcellular volumes. I. Stochastic and diffusion effects on individual pathways. Biophys. J. 87:733-44
-
(2004)
Biophys. J.
, vol.87
, pp. 733-744
-
-
Bhalla, U.S.1
-
11
-
-
4143144113
-
Signaling in small subcellular volumes. II. Stochastic and diffusion effects on synaptic network properties
-
Bhalla US. 2004. Signaling in small subcellular volumes. II. Stochastic and diffusion effects on synaptic network properties. Biophys. J. 87:745-53
-
(2004)
Biophys. J.
, vol.87
, pp. 745-753
-
-
Bhalla, U.S.1
-
12
-
-
0033555859
-
Emergent properties of networks of biological signaling pathways
-
Bhalla US, Iyengar R. 1999. Emergent properties of networks of biological signaling pathways. Science 283:381-87
-
(1999)
Science
, vol.283
, pp. 381-387
-
-
Bhalla, U.S.1
Iyengar, R.2
-
13
-
-
0035236836
-
Functional modules in biological signalling networks
-
Bhalla US, Iyengar R. 2001. Functional modules in biological signalling networks. Novartis Found. Symp. 239:4-13
-
(2001)
Novartis Found. Symp.
, vol.239
, pp. 4-13
-
-
Bhalla, U.S.1
Iyengar, R.2
-
14
-
-
0037047611
-
MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network
-
Bhalla US, Ram PT, Iyengar R. 2002. MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network. Science 297:1018-23
-
(2002)
Science
, vol.297
, pp. 1018-1023
-
-
Bhalla, U.S.1
Ram, P.T.2
Iyengar, R.3
-
15
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, et al. 1997. The complete genome sequence of Escherichia coli K-12. Science 277:1453-74
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
Plunkett III, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
-
16
-
-
0027476024
-
A synaptic model of memory: Long-term potentiation in the hippocampus
-
Bliss TV, Collingridge GL. 1993. A synaptic model of memory: long-term potentiation in the hippocampus. Nature 361:31-39
-
(1993)
Nature
, vol.361
, pp. 31-39
-
-
Bliss, T.V.1
Collingridge, G.L.2
-
17
-
-
0032546994
-
Gating of CaMKII by cAMP-regulated protein phosphatase activity during LTP
-
Blitzer RD, Connor JH, Brown GP, Wong T, Shenolikar S, et al. 1998. Gating of CaMKII by cAMP-regulated protein phosphatase activity during LTP. Science 280:1940-42
-
(1998)
Science
, vol.280
, pp. 1940-1942
-
-
Blitzer, R.D.1
Connor, J.H.2
Brown, G.P.3
Wong, T.4
Shenolikar, S.5
-
18
-
-
0029559465
-
Postsynaptic cAMP pathway gates early LTP in hippocampal CA1 region
-
Blitzer RD, Wong T, Nouranifar R, Iyengar R, Landau EM. 1995. Postsynaptic cAMP pathway gates early LTP in hippocampal CA1 region. Neuron 15:1403-14
-
(1995)
Neuron
, vol.15
, pp. 1403-1414
-
-
Blitzer, R.D.1
Wong, T.2
Nouranifar, R.3
Iyengar, R.4
Landau, E.M.5
-
19
-
-
0034683236
-
Protein targeting
-
Blobel G. 2000. Protein targeting. Chembiochem 18:86-102
-
(2000)
Chembiochem
, vol.18
, pp. 86-102
-
-
Blobel, G.1
-
20
-
-
0842309871
-
Genome-wide RNAi analysis of growth and viability in Drosophila cells
-
Boutros M, Kiger AA, Armknecht S, Kerr K, Hild M, et al. 2004. Genome-wide RNAi analysis of growth and viability in Drosophila cells. Science 303:832-35
-
(2004)
Science
, vol.303
, pp. 832-835
-
-
Boutros, M.1
Kiger, A.A.2
Armknecht, S.3
Kerr, K.4
Hild, M.5
-
21
-
-
12144289400
-
A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway
-
Bouwmeester T, Bauch A, Ruffner H, Angrand PO, Bergamini G, et al. 2004. A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway. Nat. Cell Biol. 6:97-105
-
(2004)
Nat. Cell Biol.
, vol.6
, pp. 97-105
-
-
Bouwmeester, T.1
Bauch, A.2
Ruffner, H.3
Angrand, P.O.4
Bergamini, G.5
-
23
-
-
0038074373
-
Topological structure analysis of the protein-protein interaction network in budding yeast
-
Bu D, Zhao Y, Cai L, Xue H, Zhu X, et al. 2003. Topological structure analysis of the protein-protein interaction network in budding yeast. Nucleic Acids Res. 31:2443-50
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 2443-2450
-
-
Bu, D.1
Zhao, Y.2
Cai, L.3
Xue, H.4
Zhu, X.5
-
25
-
-
13244259780
-
Quantitative information management for the biochemical computation of cellular networks
-
Campagne F, Neves S, Chang CW, Skrabanek L, Ram PT, et al. 2004. Quantitative information management for the biochemical computation of cellular networks. Sci. STKE 248:PL11
-
(2004)
Sci. STKE
, vol.248
-
-
Campagne, F.1
Neves, S.2
Chang, C.W.3
Skrabanek, L.4
Ram, P.T.5
-
26
-
-
0028296444
-
Suppression of Ras-induced transformation of NIH 3T3 cells by activated G alphas
-
Chen J, Iyengar R. 1994. Suppression of Ras-induced transformation of NIH 3T3 cells by activated G alphas. Science 263:1278-81
-
(1994)
Science
, vol.263
, pp. 1278-1281
-
-
Chen, J.1
Iyengar, R.2
-
27
-
-
0031456052
-
Adenylyl cyclase 6 is selectively regulated by protein kinase a phosphorylation in a region involved in G-alpha stimulation
-
Chen Y, Harry A, Li J, Smit MJ, Bai X, et al. 1998. Adenylyl cyclase 6 is selectively regulated by protein kinase A phosphorylation in a region involved in G-alpha stimulation. Proc. Natl. Acad. Sci. USA 94:14100-4
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 14100-14104
-
-
Chen, Y.1
Harry, A.2
Li, J.3
Smit, M.J.4
Bai, X.5
-
28
-
-
0033671742
-
Targeting of PKA to glutamate receptors through a MAGUK-AKAP complex
-
Colledge M, Dean RA, Scott GK, Langeberg LK, Huganir RL, et al. 2000. Targeting of PKA to glutamate receptors through a MAGUK-AKAP complex. Neuron 27:107-19
-
(2000)
Neuron
, vol.27
, pp. 107-119
-
-
Colledge, M.1
Dean, R.A.2
Scott, G.K.3
Langeberg, L.K.4
Huganir, R.L.5
-
29
-
-
0027716596
-
Inhibition by cAMP of Ras-dependent activation of Raf
-
Cook SJ, McCormick F. 1993. Inhibition by cAMP of Ras-dependent activation of Raf. Science 262:1069-72
-
(1993)
Science
, vol.262
, pp. 1069-1072
-
-
Cook, S.J.1
McCormick, F.2
-
30
-
-
0037008997
-
Proteomic analysis of the mammalian nuclear pore complex
-
Cronshaw JM, Krutchinsky AN, Zhang W, Chait BT, Matunis MJ. 2002. Proteomic analysis of the mammalian nuclear pore complex. J. Cell. Biol. 158:915-27
-
(2002)
J. Cell. Biol.
, vol.158
, pp. 915-927
-
-
Cronshaw, J.M.1
Krutchinsky, A.N.2
Zhang, W.3
Chait, B.T.4
Matunis, M.J.5
-
31
-
-
0042855693
-
An experimental study of search in global social networks
-
Dodds PS, Muhamad R, Watts DJ. 2003. An experimental study of search in global social networks. Science 301:827-29
-
(2003)
Science
, vol.301
, pp. 827-829
-
-
Dodds, P.S.1
Muhamad, R.2
Watts, D.J.3
-
32
-
-
0027422247
-
The pathway to signal achievement
-
Egan SE, Weinberg RA. 1993. The pathway to signal achievement. Nature 365:781-83
-
(1993)
Nature
, vol.365
, pp. 781-783
-
-
Egan, S.E.1
Weinberg, R.A.2
-
33
-
-
0642285840
-
Preferential attachment in the protein network evolution
-
Eisenberg E, Levanon EY. 2003. Preferential attachment in the protein network evolution. Phys. Rev. Lett. 91:138701
-
(2003)
Phys. Rev. Lett.
, vol.91
, pp. 138701
-
-
Eisenberg, E.1
Levanon, E.Y.2
-
34
-
-
0344736694
-
A detailed predictive model of the mammalian circadian clock
-
Forger DB, Peskin CS. 2003. A detailed predictive model of the mammalian circadian clock. Proc. Natl. Acad. Sci. USA 100:14806-11
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 14806-14811
-
-
Forger, D.B.1
Peskin, C.S.2
-
35
-
-
0035236048
-
GENIES: A natural-language processing system for the extraction of molecular pathways from journal articles
-
Friedman C, Kra P, Yu H, Krauthammer M, Rzhetsky A. 2001. GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. Bioinformatics 17:S74-S82
-
(2001)
Bioinformatics
, vol.17
-
-
Friedman, C.1
Kra, P.2
Yu, H.3
Krauthammer, M.4
Rzhetsky, A.5
-
36
-
-
0038048325
-
Inferring genetic networks and identifying compound mode of action via expression profiling
-
Gardner TS, di Bernardo D, Lorenz D, Collins JJ. 2003. Inferring genetic networks and identifying compound mode of action via expression profiling. Science 301:102-5
-
(2003)
Science
, vol.301
, pp. 102-105
-
-
Gardner, T.S.1
Di Bernardo, D.2
Lorenz, D.3
Collins, J.J.4
-
37
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
Giaever G, Chu AM, Ni L, Connelly C, Riles L, et al. 2002. Functional profiling of the Saccharomyces cerevisiae genome. Nature 418:387-91
-
(2002)
Nature
, vol.418
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
-
38
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
Gillespie DT. 1976. A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J. Comput. Phys. 22:403-34
-
(1976)
J. Comput. Phys.
, vol.22
, pp. 403-434
-
-
Gillespie, D.T.1
-
39
-
-
0037590604
-
Overview of the Alliance for Cellular Signaling
-
Gilman AG, Simon MI, Bourne HR, Harris BA, Long R, et al. 2002. Overview of the Alliance for Cellular Signaling. Nature 420:703-6
-
(2002)
Nature
, vol.420
, pp. 703-706
-
-
Gilman, A.G.1
Simon, M.I.2
Bourne, H.R.3
Harris, B.A.4
Long, R.5
-
40
-
-
0345600247
-
A protein interaction map of Drosophila melanogaster
-
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, et al. 2003. A protein interaction map of Drosophila melanogaster. Science 302:1727-36
-
(2003)
Science
, vol.302
, pp. 1727-1736
-
-
Giot, L.1
Bader, J.S.2
Brouwer, C.3
Chaudhuri, A.4
Kuang, B.5
-
41
-
-
0035885153
-
Mitogen-activated protein kinase regulates early phosphorylation and delayed expression of calcium/calmodulin-dependent protein kinase II in long-term potentiation
-
Giovannini MG, Blitzer RD, Wong T, Asoma K, Tsokas P, et al. 2001. Mitogen-activated protein kinase regulates early phosphorylation and delayed expression of calcium/calmodulin-dependent protein kinase II in long-term potentiation. J. Neurosci. 21:7053-62
-
(2001)
J. Neurosci.
, vol.21
, pp. 7053-7062
-
-
Giovannini, M.G.1
Blitzer, R.D.2
Wong, T.3
Asoma, K.4
Tsokas, P.5
-
42
-
-
0037024612
-
Science's signal transduction knowledge environment: The connections maps database
-
Gough NR. 2002. Science's signal transduction knowledge environment: the connections maps database. Ann. N.Y. Acad. Sci. 971:585-87
-
(2002)
Ann. N.Y. Acad. Sci.
, vol.971
, pp. 585-587
-
-
Gough, N.R.1
-
43
-
-
0036566226
-
Differentiation plasticity of hematopoietic cells
-
Graf T. 2002. Differentiation plasticity of hematopoietic cells. Blood 99:3089-101
-
(2002)
Blood
, vol.99
, pp. 3089-3101
-
-
Graf, T.1
-
46
-
-
0028568315
-
Cell cycle control and cancer
-
Hartwell LH, Kastan MB. 1994. Cell cycle control and cancer. Science 266:1821-28
-
(1994)
Science
, vol.266
, pp. 1821-1828
-
-
Hartwell, L.H.1
Kastan, M.B.2
-
47
-
-
0034693459
-
Mathematical modeling of epidermal growth factor receptor signaling through the phospholipase C pathway: Mechanistic insights and predictions for molecular interventions
-
Haugh JM, Wells A, Lauffenburger DA. 2000. Mathematical modeling of epidermal growth factor receptor signaling through the phospholipase C pathway: mechanistic insights and predictions for molecular interventions. Biotechnol. Bioeng. 70:225-38
-
(2000)
Biotechnol. Bioeng.
, vol.70
, pp. 225-238
-
-
Haugh, J.M.1
Wells, A.2
Lauffenburger, D.A.3
-
48
-
-
0034708587
-
Driving AMPA receptors into synapses by LTP and CaMKII: Requirement for GluR1 and PDZ domain interaction
-
Hayashi Y, Shi SH, Esteban JA, Piccini A, Poncer JC, et al. 2000. Driving AMPA receptors into synapses by LTP and CaMKII: requirement for GluR1 and PDZ domain interaction. Science 287:2262-67
-
(2000)
Science
, vol.287
, pp. 2262-2267
-
-
Hayashi, Y.1
Shi, S.H.2
Esteban, J.A.3
Piccini, A.4
Poncer, J.C.5
-
49
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, et al. 2002. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415:180-83
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
-
50
-
-
0037342537
-
The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models
-
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, et al. 2003. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 19:524-31
-
(2003)
Bioinformatics
, vol.19
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
Bolouri, H.4
Doyle, J.C.5
-
51
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, et al. 2001. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl. Acad. Sci. USA 98:4569-74
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
-
52
-
-
0030047730
-
Gating by cyclic AMP: Expanded role for an old signaling pathway
-
Iyengar R. 1996. Gating by cyclic AMP: expanded role for an old signaling pathway. Science 271:461-63
-
(1996)
Science
, vol.271
, pp. 461-463
-
-
Iyengar, R.1
-
53
-
-
0842320458
-
A high-throughput quantitative multiplex kinase assay for monitoring information flow in signaling networks: Application to sepsis-apoptosis
-
Janes KA, Albeck JG, Peng LX, Sorger PK, Lauffenburger DA, et al. 2003. A high-throughput quantitative multiplex kinase assay for monitoring information flow in signaling networks: application to sepsis-apoptosis. Mol. Cell. Proteomics 2: 463-73
-
(2003)
Mol. Cell. Proteomics
, vol.2
, pp. 463-473
-
-
Janes, K.A.1
Albeck, J.G.2
Peng, L.X.3
Sorger, P.K.4
Lauffenburger, D.A.5
-
56
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong H, Tombor B, Albert R, Oltvai ZN, Barabasi AL. 2000. The large-scale organization of metabolic networks. Nature 407:651-54
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
57
-
-
0034644509
-
Signaling networks: The origins of cellular multitasking
-
Jordan JD, Landau EM, Iyengar R. 2000. Signaling networks: the origins of cellular multitasking. Cell 103:193-200
-
(2000)
Cell
, vol.103
, pp. 193-200
-
-
Jordan, J.D.1
Landau, E.M.2
Iyengar, R.3
-
58
-
-
0037868952
-
Single-cell microarray analysis in hippocampus CA1: Demonstration and validation of cellular heterogeneity
-
Kamme F, Salunga R, Yu J, Tran DT, Zhu J, et al. 2003. Single-cell microarray analysis in hippocampus CA1: demonstration and validation of cellular heterogeneity. J. Neurosci. 23:3607-15
-
(2003)
J. Neurosci.
, vol.23
, pp. 3607-3615
-
-
Kamme, F.1
Salunga, R.2
Yu, J.3
Tran, D.T.4
Zhu, J.5
-
60
-
-
0032032781
-
Metabolic databases
-
Karp PD. 1998. Metabolic databases. Trends Biochem. Sci. 23:114-16
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 114-116
-
-
Karp, P.D.1
-
62
-
-
41349103829
-
Evolving networks with multispecies nodes and spread in the number of initial links
-
Kim JW, Hunt B, Ott E. 2002. Evolving networks with multispecies nodes and spread in the number of initial links. Phys. Rev. E Stat. Nonlin. Soft. Matter. Phys. 66:046115
-
(2002)
Phys. Rev. E Stat. Nonlin. Soft. Matter. Phys.
, vol.66
, pp. 046115
-
-
Kim, J.W.1
Hunt, B.2
Ott, E.3
-
64
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
-
65
-
-
0034702259
-
Regulation of distinct AMPA receptor phosphorylation sites during bidirectional synaptic plasticity
-
Lee HK, Barbarosie M, Kameyama K, Bear MF, Huganir RL. 2000. Regulation of distinct AMPA receptor phosphorylation sites during bidirectional synaptic plasticity. Nature 405:955-59
-
(2000)
Nature
, vol.405
, pp. 955-959
-
-
Lee, H.K.1
Barbarosie, M.2
Kameyama, K.3
Bear, M.F.4
Huganir, R.L.5
-
66
-
-
0346502065
-
Dynamical and integrative cell signaling: Challenges for the new biology
-
Levchenko A. 2004. Dynamical and integrative cell signaling: challenges for the new biology. Biotechnol. Bioeng. 84:773-82
-
(2004)
Biotechnol. Bioeng.
, vol.84
, pp. 773-782
-
-
Levchenko, A.1
-
67
-
-
0037069697
-
The Molecule Pages database
-
Li J, Ning Y, Hedley W, Saunders B, Chen Y, et al. 2002. The Molecule Pages database. Nature 420:716-17
-
(2002)
Nature
, vol.420
, pp. 716-717
-
-
Li, J.1
Ning, Y.2
Hedley, W.3
Saunders, B.4
Chen, Y.5
-
68
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
Li S, Armstrong CM, Bertin N, Ge H, Milstein S, et al. 2004. A map of the interactome network of the metazoan C. elegans. Science 303:540-43
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
-
69
-
-
0035478586
-
The Virtual Cell: A software environment for computational cell biology
-
Loew LM, Schaff JC. 2001. The Virtual Cell: a software environment for computational cell biology. Trends Biotechnol. 19:401-6
-
(2001)
Trends Biotechnol.
, vol.19
, pp. 401-406
-
-
Loew, L.M.1
Schaff, J.C.2
-
70
-
-
2342587416
-
Prediction of survival in diffuse large-B-cell lymphoma based on the expression of six genes
-
Lossos IS, Czerwinski DK, Alizadeh AA, Wechser MA, Tibshirani R, et al. 2004. Prediction of survival in diffuse large-B-cell lymphoma based on the expression of six genes. N. Engl. J. Med. 350:1828-37
-
(2004)
N. Engl. J. Med.
, vol.350
, pp. 1828-1837
-
-
Lossos, I.S.1
Czerwinski, D.K.2
Alizadeh, A.A.3
Wechser, M.A.4
Tibshirani, R.5
-
72
-
-
0842288229
-
Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades
-
Markevich NI, Hoek JB, Kholodenko BN. 2004. Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades. J. Cell. Biol. 164:353-59
-
(2004)
J. Cell. Biol.
, vol.164
, pp. 353-359
-
-
Markevich, N.I.1
Hoek, J.B.2
Kholodenko, B.N.3
-
73
-
-
0019531348
-
Metabolic oscillations in biochemical systems controlled by covalent enzyme modification
-
Martiel JL, Goldbeter A. 1981. Metabolic oscillations in biochemical systems controlled by covalent enzyme modification. Biochimie 63:119-24
-
(1981)
Biochimie
, vol.63
, pp. 119-124
-
-
Martiel, J.L.1
Goldbeter, A.2
-
75
-
-
0027370376
-
GEPASI: A software package for modelling the dynamics, steady states and control of biochemical and other systems
-
Mendes P. 1993. GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems. Comput. Appl. Biosci. 9:563-71
-
(1993)
Comput. Appl. Biosci.
, vol.9
, pp. 563-571
-
-
Mendes, P.1
-
76
-
-
8544240102
-
Overview of the yeast genome
-
Mewes HW, Albermann K, Bahr M, Frishman D, Gleissner A, et al. 1997. Overview of the yeast genome. Nature 387:7-65
-
(1997)
Nature
, vol.387
, pp. 7-65
-
-
Mewes, H.W.1
Albermann, K.2
Bahr, M.3
Frishman, D.4
Gleissner, A.5
-
77
-
-
0002687371
-
The small world problem
-
Milgram S. 1967. The small world problem. Psychol. Today 2:60-67
-
(1967)
Psychol. Today
, vol.2
, pp. 60-67
-
-
Milgram, S.1
-
78
-
-
4344715809
-
Response to "Comment on 'Network motifs: Simple building blocks of complex networks' and 'Superfamilies of evolved and designed networks'"
-
Milo R, Itzkovitz S, Kashtan N, Levitt R, Alon U. 2004. Response to "Comment on 'Network motifs: simple building blocks of complex networks' and 'Superfamilies of evolved and designed networks'" Science 305:1107D
-
(2004)
Science
, vol.305
-
-
Milo, R.1
Itzkovitz, S.2
Kashtan, N.3
Levitt, R.4
Alon, U.5
-
79
-
-
1542287343
-
Superfamilies of evolved and designed networks
-
Milo R, Itzkovitz S, Kashtan N, Levitt R, Shen-Orr S, et al. 2004. Superfamilies of evolved and designed networks. Science 303:1538-42
-
(2004)
Science
, vol.303
, pp. 1538-1542
-
-
Milo, R.1
Itzkovitz, S.2
Kashtan, N.3
Levitt, R.4
Shen-Orr, S.5
-
80
-
-
0037174670
-
Network motifs: Simple building blocks of complex networks
-
Milo R, Shen-Orr S, Itzkovitz S, Kashtan N, Chklovskii D, et al. 2002. Network motifs: simple building blocks of complex networks. Science 298:824-27
-
(2002)
Science
, vol.298
, pp. 824-827
-
-
Milo, R.1
Shen-Orr, S.2
Itzkovitz, S.3
Kashtan, N.4
Chklovskii, D.5
-
81
-
-
10744224439
-
Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria
-
Mootha VK, Bunkenborg J, Olsen JV, Hjerrild M, Wisniewski JR, et al. 2003. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Cell 115:629-40
-
(2003)
Cell
, vol.115
, pp. 629-640
-
-
Mootha, V.K.1
Bunkenborg, J.2
Olsen, J.V.3
Hjerrild, M.4
Wisniewski, J.R.5
-
82
-
-
0037204994
-
A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome
-
Mural RJ, Adams MD, Myers EW, Smith HO, Miklos GL, et al. 2002. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science 296:1661-71
-
(2002)
Science
, vol.296
, pp. 1661-1671
-
-
Mural, R.J.1
Adams, M.D.2
Myers, E.W.3
Smith, H.O.4
Miklos, G.L.5
-
83
-
-
0028038057
-
Requirement of a critical period of transcription for induction of a late phase of LTP
-
Nguyen PV, Abel T, Kandel ER. 1994. Requirement of a critical period of transcription for induction of a late phase of LTP. Science 265:1104-7
-
(1994)
Science
, vol.265
, pp. 1104-1107
-
-
Nguyen, P.V.1
Abel, T.2
Kandel, E.R.3
-
84
-
-
0242559054
-
Pathway studio: The analysis and navigation of molecular networks
-
Nikitin A, Egorov S, Daraselia N, Mazo I. 2003. Pathway studio: the analysis and navigation of molecular networks. Bioinformatics 19:2155-57
-
(2003)
Bioinformatics
, vol.19
, pp. 2155-2157
-
-
Nikitin, A.1
Egorov, S.2
Daraselia, N.3
Mazo, I.4
-
85
-
-
0037460091
-
Evolving protein interaction networks through gene duplication
-
Pastor-Satorras R, Smith E, Sole RV. 2003. Evolving protein interaction networks through gene duplication. J. Theor. Biol. 222:199-210
-
(2003)
J. Theor. Biol.
, vol.222
, pp. 199-210
-
-
Pastor-Satorras, R.1
Smith, E.2
Sole, R.V.3
-
86
-
-
0034773788
-
Some forms of cAMP-mediated long-lasting potentiation are associated with release of BDNF and nuclear translocation of phospho-MAP kinase
-
Patterson SL, Pittenger C, Morozov A, Martin KC, Scanlin H, et al. 2001. Some forms of cAMP-mediated long-lasting potentiation are associated with release of BDNF and nuclear translocation of phospho-MAP kinase. Neuron 32:123-40
-
(2001)
Neuron
, vol.32
, pp. 123-140
-
-
Patterson, S.L.1
Pittenger, C.2
Morozov, A.3
Martin, K.C.4
Scanlin, H.5
-
87
-
-
0031457622
-
Signaling through scaffold, anchoring, and adaptor proteins
-
Pawson T, Scott JD. 1998. Signaling through scaffold, anchoring, and adaptor proteins. Science 278:2075-80
-
(1998)
Science
, vol.278
, pp. 2075-2080
-
-
Pawson, T.1
Scott, J.D.2
-
88
-
-
10744224197
-
Development of human protein reference database as an initial platform for approaching systems biology in humans
-
Peri S, Navarro JD, Amanchy R, Kristiansen TZ, Jonnalagadda CK, et al. 2003. Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Res. 13:2363-71
-
(2003)
Genome Res.
, vol.13
, pp. 2363-2371
-
-
Peri, S.1
Navarro, J.D.2
Amanchy, R.3
Kristiansen, T.Z.4
Jonnalagadda, C.K.5
-
89
-
-
0029153083
-
Distinct characteristics of the basal activities of adenylyl cyclases 2 and 6
-
Pieroni JP, Harry A, Chen J, Jacobowitz O, Magnusson RP, et al. 1995. Distinct characteristics of the basal activities of adenylyl cyclases 2 and 6. J. Biol. Chem. 270:21368-73
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 21368-21373
-
-
Pieroni, J.P.1
Harry, A.2
Chen, J.3
Jacobowitz, O.4
Magnusson, R.P.5
-
92
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks
-
Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabasi AL. 2002. Hierarchical organization of modularity in metabolic networks. Science 297:1551-55
-
(2002)
Science
, vol.297
, pp. 1551-1555
-
-
Ravasz, E.1
Somera, A.L.2
Mongru, D.A.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
93
-
-
0027412240
-
Phosphorylation and modulation of recombinant GluR6 glutamate receptors by cAMP-dependent protein kinase
-
Raymond LA, Blackstone CD, Huganir RL. 1993. Phosphorylation and modulation of recombinant GluR6 glutamate receptors by cAMP-dependent protein kinase. Nature 361:637-41
-
(1993)
Nature
, vol.361
, pp. 637-641
-
-
Raymond, L.A.1
Blackstone, C.D.2
Huganir, R.L.3
-
94
-
-
0034944377
-
Visualization of biochemical networks in living cells
-
Remy I, Michnick SW. 2001. Visualization of biochemical networks in living cells. Proc. Natl. Acad. Sci. USA 98:7678-83
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 7678-7683
-
-
Remy, I.1
Michnick, S.W.2
-
95
-
-
0033592303
-
Modeling activation and desensitization of G-protein coupled receptors provides insight into ligand efficacy
-
Riccobene TA, Omann GM, Linderman JJ. 1999. Modeling activation and desensitization of G-protein coupled receptors provides insight into ligand efficacy. J. Theor. Biol. 200:207-22
-
(1999)
J. Theor. Biol.
, vol.200
, pp. 207-222
-
-
Riccobene, T.A.1
Omann, G.M.2
Linderman, J.J.3
-
96
-
-
0034634571
-
Understanding glucose transport by the bacterial phosphoenolpyruvate: glycose phosphotransferase system on the basis of kinetic measurements in vitro
-
Rohwer JM, Meadow ND, Roseman S, Westerhoff HV, Postma PW. 2000. Understanding glucose transport by the bacterial phosphoenolpyruvate:glycose phosphotransferase system on the basis of kinetic measurements in vitro. J. Biol. Chem. 275:34909-21
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 34909-34921
-
-
Rohwer, J.M.1
Meadow, N.D.2
Roseman, S.3
Westerhoff, H.V.4
Postma, P.W.5
-
97
-
-
0033669189
-
A network of protein-protein interactions in yeast
-
Schwikowski B, Uetz P, Fields S. 2000. A network of protein-protein interactions in yeast. Nat. Biotechnol. 18:1257-61
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 1257-1261
-
-
Schwikowski, B.1
Uetz, P.2
Fields, S.3
-
98
-
-
0141919571
-
Glutamate receptor subunit 2 serine 880 phosphorylation modulates synaptic transmission and mediates plasticity in CA1 pyramidal cells
-
Seidenman KJ, Steinberg JP, Huganir R, Malinow R. 2003. Glutamate receptor subunit 2 serine 880 phosphorylation modulates synaptic transmission and mediates plasticity in CA1 pyramidal cells. J. Neurosci. 23:9220-28
-
(2003)
J. Neurosci.
, vol.23
, pp. 9220-9228
-
-
Seidenman, K.J.1
Steinberg, J.P.2
Huganir, R.3
Malinow, R.4
-
99
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
Shen-Orr SS, Milo R, Mangan S, Alon U. 2002. Network motifs in the transcriptional regulation network of Escherichia coli. Nat. Genet. 31:64-68
-
(2002)
Nat. Genet.
, vol.31
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
100
-
-
0037805567
-
Modelling the bacterial chemotaxis receptor complex
-
Shimizu TS, Bray D. 2003. Modelling the bacterial chemotaxis receptor complex. Novartis Found. Symp. 247:162-77
-
(2003)
Novartis Found. Symp.
, vol.247
, pp. 162-177
-
-
Shimizu, T.S.1
Bray, D.2
-
102
-
-
0032424859
-
Identity of adenylyl cyclase isoform determines the rate of cell cycle progression in NIH 3T3 cells
-
Smit MJ, Verzijl D, Iyengar R. 1998. Identity of adenylyl cyclase isoform determines the rate of cell cycle progression in NIH 3T3 cells. Proc. Natl. Acad. Sci. USA 95:15084-89
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 15084-15089
-
-
Smit, M.J.1
Verzijl, D.2
Iyengar, R.3
-
103
-
-
0037127047
-
Systems analysis of Ran transport
-
Smith AE, Slepchenko BM, Schaff JC, Loew LM, Macara IG. 2002. Systems analysis of Ran transport. Science 295:488-91
-
(2002)
Science
, vol.295
, pp. 488-491
-
-
Smith, A.E.1
Slepchenko, B.M.2
Schaff, J.C.3
Loew, L.M.4
Macara, I.G.5
-
104
-
-
0003009091
-
Automated modelling of signal transduction networks
-
BMC
-
Steffen M, Petti A, Aach J, D'haeseleer P, Church G. 2002. Automated modelling of signal transduction networks. BMC. Bioinformatics 3:34
-
(2002)
Bioinformatics
, vol.3
, pp. 34
-
-
Steffen, M.1
Petti, A.2
Aach, J.3
D'Haeseleer, P.4
Church, G.5
-
105
-
-
0002675486
-
-
ed. JM Bower, New York: Plenum
-
Stiles JR, Bartol TM Jr, Salpeter EE, Salpeter MM. 1998. Computational Neuroscience, ed. JM Bower, pp. 279-84. New York: Plenum
-
(1998)
Computational Neuroscience
, pp. 279-284
-
-
Stiles, J.R.1
Bartol Jr., T.M.2
Salpeter, E.E.3
Salpeter, M.M.4
-
106
-
-
0035826155
-
Exploring complex networks
-
Strogatz SH. 2001. Exploring complex networks. Nature 410:268-76
-
(2001)
Nature
, vol.410
, pp. 268-276
-
-
Strogatz, S.H.1
-
107
-
-
20144368638
-
Integrated genomic and proteomic analyses of gene expression in mammalian cells
-
Tian Q, Stepaniants SB, Mao M, Weng L, Feetham MC, et al. 2004. Integrated genomic and proteomic analyses of gene expression in mammalian cells. Mol. Cell. Proteomics 3:960-69
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 960-969
-
-
Tian, Q.1
Stepaniants, S.B.2
Mao, M.3
Weng, L.4
Feetham, M.C.5
-
108
-
-
10744230485
-
Global mapping of the yeast genetic interaction network
-
Tong AH, Lesage G, Bader GD, Ding H, Xu H, et al. 2004. Global mapping of the yeast genetic interaction network. Science 303:808-13
-
(2004)
Science
, vol.303
, pp. 808-813
-
-
Tong, A.H.1
Lesage, G.2
Bader, G.D.3
Ding, H.4
Xu, H.5
-
109
-
-
0347724159
-
Adaptive stochastic-deterministic chemical kinetic simulations
-
Vasudeva K, Bhalla US. 2003. Adaptive stochastic-deterministic chemical kinetic simulations. Bioinformatics 20:78-84
-
(2003)
Bioinformatics
, vol.20
, pp. 78-84
-
-
Vasudeva, K.1
Bhalla, U.S.2
-
110
-
-
4143123132
-
Developing complex signaling models using GENESIS/Kinetikit
-
Vayttaden SJ, Bhalla US. 2004. Developing complex signaling models using GENESIS/Kinetikit. Sci. STKE 2004: PL4
-
(2004)
Sci. STKE
, vol.2004
-
-
Vayttaden, S.J.1
Bhalla, U.S.2
-
111
-
-
0035895505
-
The sequence of the human genome
-
Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, et al. 2001. The sequence of the human genome. Science 291:1304-51
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
-
112
-
-
0034644270
-
The segment polarity network is a robust developmental module
-
von Dassow G, Meir E, Munro EM, Odell GM. 2000. The segment polarity network is a robust developmental module. Nature 406:188-92
-
(2000)
Nature
, vol.406
, pp. 188-192
-
-
Von Dassow, G.1
Meir, E.2
Munro, E.M.3
Odell, G.M.4
-
113
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
von Mering C, Krause R, Snel B, Cornell M, Oliver SG, et al. 2002. Comparative assessment of large-scale data sets of protein-protein interactions. Nature 417:399-403
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
Von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.G.5
-
115
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
Watts DJ, Strogatz SH. 1998. Collective dynamics of 'small-world' networks. Nature 393:440-42
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
116
-
-
0033515888
-
Complexity in biological signaling systems
-
Weng G, Bhalla US, Iyengar R. 1999. Complexity in biological signaling systems. Science 284:92-96
-
(1999)
Science
, vol.284
, pp. 92-96
-
-
Weng, G.1
Bhalla, U.S.2
Iyengar, R.3
-
118
-
-
0037148758
-
The genome sequence of Schizosaccharomyces pombe
-
Wood V, Gwilliam R, Rajandream MA, Lyne M, Lyne R, et al. 2002. The genome sequence of Schizosaccharomyces pombe. Nature 415:871-80
-
(2002)
Nature
, vol.415
, pp. 871-880
-
-
Wood, V.1
Gwilliam, R.2
Rajandream, M.A.3
Lyne, M.4
Lyne, R.5
-
119
-
-
0027772672
-
Inhibition of the EGF-activated MAP kinase signaling pathway by adenosine 3′,5′-monophosphate
-
Wu J, Dent P, Jelinek T, Wolfman A, Weber MJ, et al. 1993. Inhibition of the EGF-activated MAP kinase signaling pathway by adenosine 3′,5′- monophosphate. Science 262:1065-69
-
(1993)
Science
, vol.262
, pp. 1065-1069
-
-
Wu, J.1
Dent, P.2
Jelinek, T.3
Wolfman, A.4
Weber, M.J.5
-
120
-
-
0034747028
-
DIP: The database of interacting proteins: 2001 update
-
Xenarios I, Fernandez E, Salwinski L, Duan XJ, Thompson MJ, et al. 2000. DIP: the database of interacting proteins: 2001 update. Nucleic Acids Res. 29:239-41
-
(2000)
Nucleic Acids Res.
, vol.29
, pp. 239-241
-
-
Xenarios, I.1
Fernandez, E.2
Salwinski, L.3
Duan, X.J.4
Thompson, M.J.5
-
121
-
-
3142624790
-
Scaling of directed dynamical small-world networks with random responses
-
Zhu CP, Xiong SJ, Tian YJ, Li N, Jiang KS. 2004. Scaling of directed dynamical small-world networks with random responses. Phys. Rev. Lett. 92:218702
-
(2004)
Phys. Rev. Lett.
, vol.92
, pp. 218702
-
-
Zhu, C.P.1
Xiong, S.J.2
Tian, Y.J.3
Li, N.4
Jiang, K.S.5
|