Sequence-based typing of the HLA-A10/A19 group and confirmation of a pseudogene coamplified with A*3401

Human Immunology

Volumn 66, Issue 5, 2005, Pages 535-542

  Swelsen, Wendy T N ^a   Voorter, Christina E M ^a   Van Den Berg Loonen, Ella M ^a  

^a MAASTRICHT UNIVERSITY MEDICAL CENTER   (Netherlands)

Author keywords

COQ; DEL; HLA A10; HLA A19; Pseudogene; SBT

Indexed keywords

DNA; HLA A 10 ANTIGEN; HLA A 19 ANTIGEN; HLA A ANTIGEN; HLA C ANTIGEN; HLA D ANTIGEN; UNCLASSIFIED DRUG;

ALLELE; ARTICLE; DNA ISOLATION; EXON; GENE AMPLIFICATION; GENE IDENTIFICATION; GENE LOCATION; GENE SEQUENCE; GENETIC LINKAGE; GENOTYPE; HETEROZYGOSITY; HOMOZYGOSITY; HUMAN; IMMUNOGENETICS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PSEUDOGENE; SEQUENCE ANALYSIS; VALIDATION PROCESS;

ALLELES; EXONS; HETEROZYGOTE; HISTOCOMPATIBILITY TESTING; HLA-A ANTIGENS; HOMOZYGOTE; HUMANS; INTRONS; POLYMERASE CHAIN REACTION; PSEUDOGENES; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

EID: 20444391014     PISSN: 01988859     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.humimm.2005.01.005     Document Type: Article

References (34)

1. J. Robinson, M.J. Waller, P. Parham, N. de Groot, R. Bontrop, L.J. Kennedy, P. Stoehr, S.G.E. Marsh IMGT/HLA and IMGT/MHC sequence databases for the study of the major histocompatibility complex Nucleic Acids Res 31 2003 311
2. A. Townsend, H. Bodmer Antigen recognition by class I-restricted T lymphocytes Annu Rev Immunol 7 1989 601
3. E.O. Long, S. Rajagopalan HLA class I recognition by killer cell Ig-like receptors Immunology 12 2000 101
4. A. Moretta, R. Biassoni, C. Bottino, D. Pende, M. Vitale, A. Poggi, M.C. Mingari, L. Moretta Major histocompatibility complex class I-specific receptors on human natural killer and T lymphocytes Immunol Rev 155 1997 105
5. V. Joysey, E.D. du Toit, R.W. Martell, D.G. Taljaard, B. Crichton, T. Doran, Y. Morishima, P. Wheeler, V. Lazda, S.M. Tait, A. Cambon-Thomsen Antigen society #2 report (A25, A26, AW34, AW43 and AW66) B. Dupont Immunobiology of HLA vol 1 1989 Springer-Verlag New York 119
6. P. Richiardi, E.S. Curtoni, A. Piazza, P.L. Mattiuz Identification of two determinants included in "antigen" HLA-10 (TO 31 and TO 40) and of a new family of cross-reacting specificities (HL-A1, 11, TO 30,31,40) Tissue Antigens 1 1971 162
7. L. Legrand, J. Dausset, F.T. Rapaport Serological and genetic studies of the HL-A system. Results of host immunization within haplo-identical donor-recipient combinations Transfusion 11 1971 233
8. V.C. Joysey, J.H. Roger, A. Abbas, C. Bland, M. Bolton, Chan, G. Duraisamy, A. Jones, K.A. Joysey, C.G. Lopez, B.A.R. Megat, M. Moorcroft, M. Simons, M. Simonsen, Subramanian, M. Wilkinson Study of a Malay population J. Dausset J. Colombani Histocompatibility testing 1972 Munksgaard Copenhagen 251
9. H. Festenstein, E. Adams, J. Brown, J. Burke, P. Lincoln, R.T.D. Oliver, G. Rondiak, J.A. Sachs, S.G. Welch, E. Wolf The distribution of HL-A antigens and other polymorphisms in Bantu-speaking J. Dausset J. Colombani Histocompatibility testing 1972 Munksgaard Copenhagen 397
10. J. Bodmer The A B C of HLA. A serological report of the 6th Histocompatibility Testing Workshop F. Kissmeyer-Nielsen Histocompatibility testing 1975 Munksgaard Copenhagen 21
11. B. Mesman, G. de Lange, C.P. Engelfriet A new HLA-A antigen, called LN, closely related to A25, A26 and Aw34 Tissue Antigens 21 1983 192
12. W.F. Bodmer, E. Albert, J.G. Bodmer, J. Dausset, F. Kissmeyer-Nielsen, W. Mayr, R. Payne, J.J. van Rood, Z. Trnka, R.L. Walford Nomenclature for factors of the HLA system 1984 Immunogenetics 20 1984 593
13. J.A. Madrigal, W.H. Hildebrand, M.P. Belich, R.J. Benjamin, A.M. Little, J. Zemmour, P.D. Ennis, F.E. Ward, M.L. Petzl-Erler, E.D. du Toit, P. Parham Structural diversity in the HLA-A10 family of alleles correlations with serology Tissue Antigens 41 1993 72
14. C.B. Carpenter, P. Dyer, H. Festenstein, J. Moraes, J. Gagne, D.J. McCloskey, J. Marwick, D. Tate, T. Barbalho, M. Beach, M. Lima, P. Mackintosh, M. Moraes, L. Ratner Antigen society #3 report (AW19 and A32/Aw74) B. Dupont Immunobiology of HLA vol. 1 1989 Springer-Verlag New York 124
15. W.F. Bodmer, E. Albert, J.G. Bodmer, B. Dupont, B. Mach, W.R. Mayr, T. Sasazuki, G.M.T. Schreuder, A. Svejgaard, P.I. Terasaki Nomenclature for factors of the HLA system, 1987 B. Dupont Immunobiology of HLA vol 1 1989 Springer-Verlag New York 72
16. K. Kato, J.A. Trapani, J. Allopenna, B. Dupont, S.Y. Yang Molecular analysis of the serologically defined HLA-Aw19 antigens. A genetically distinct family of HLA-A antigens comprising A29, A31, A32, and Aw33, but probably not A30 J Immunol 143 1989 3371
17. R. Blasczyk, J. Wehling, K. Kotsch, A. Salama The diversity of the HLA class I introns reflects the serological relationship of the coding regions Transfusionsmedizin 34 1996 231
18. H.-A. Elsner, J. Rozas, R. Blasczyk The nature of introns 4-7 largely reflects the lineage specificity of HLA-A alleles Immunogenetics 54 2002 447
19. C. Pera, L. Delfino, A. Morabito, A. Longo, L. Johnston-Dow, C.B. White, M. Colonna, G.B. Ferrara HLA-A typing comparison between serology, the amplification refractory mutation system with polymerase chain reaction and sequencing Tissue Antigens 50 1997 372
20. L. Norgaard, L. Fugger, B.K. Jakobsen, A. Svejgaard Sequencing-based typing of HLA-A locus using mRNA and a single locus-specific PCR followed by cycle-sequencing with AmpliTaq DNA polymerase, FS Tissue Antigens 49 1997 455
21. S.A. Scheltinga, L.A. Johnston-Dow, C.B. White, A.W. van der Zwan, J.E. Bakema, E.H. Rozemuller, J.G. van den Tweel, M.N. Kroninck, M.G.J. Tilanus A generic sequencing based typing approach for the identification of HLA-A diversity Hum Immunol 57 1997 120
22. K. Kotsch, J. Wehling, S. Köhler, R. Blasczyk Sequencing of HLA class I genes based on the conserved diversity of the noncoding regions sequencing-based typing of the HLA-A gene Tissue Antigens 50 1997 178
23. P. Santamaria, A.L. Lindstrom, M.T. Boyce-Jacino, S.H. Myster, J.J. Barbosa, A.J. Faras, S.S. Rich HLA class I sequence-based typing Hum Immunol 37 1993 39
24. A. Dormoy, N. Froelich, R. Leisenbach, B. Weschler, J.-P. Cazenave, M.-M. Tongio Mono-allelic amplification of exons 2-4 using allele group-specific primers for sequence-based typing (SBT) of the HLA-A, -B and -C genes preparation and validation of ready-to-use pre-SBT mini-kits Tissue Antigens 62 2003 201
25. R 3700 DNA Analyzer Tumori 87 2001 S40
26. G. Coquillard, M. Lau, M. Kletzel, S.G. Rodriguez-Marino Identification of two pseudogenes with sequence homology to human and gorilla MHC class IA genes ancestral haplotype in the Filipino population Hum Immunol 65 2004 665
27. M. Lau, M.S. Park, J.M. Cecka, E.F. Reed Report of the International Cell Exchange 2004 UCLA Los Angeles
28. S.A. van der Vlies, C.E.M. Voorter, E.M. van den-Loonen Berg A reliable and efficient high resolution typing method for HLA-C using sequence-based typing Tissue Antigens 52 1998 558
29. S.A. Miller, D.D. Dykes, H.F. Polesky A simple salting out procedure for extracting DNA from human nucleated cells Nucl Acids Res 16 1988 1215
30. C.E.M. Voorter, S.A. van der Vlies, E.M. van den-Loonen Berg Sequence-based typing of HLA-B the B7 cross-reacting group Tissue Antigens 56 2000 356
31. M. Bunce, M.C.N.M. Barnardo, K.I. Welsh Improvements in HLA-C typing using sequence-specific primers (PCR-SSP) including definition of HLA-Cw9 and Cw10 and a new allele HLA-"Cw7/8v" Tissue Antigens 44 1994 200
32. C.E.M. Voorter, E.H. Rozemuller, D. de-Geraets Bruyn, A.W. van der Zwan, M.G.J. Tilanus, E.M. van den-Loonen Berg Comparison of DRB sequence-based typing using different strategies Tissue Antigens 49 1997 471
33. C.E.M. Voorter, D. de-Geraets Bruyn, E.M. van den-Loonen Berg High-resolution HLA typing for the DRB3/4/5 genes by sequence-based typing Tissue Antigens 50 1997 283
34. C.E.M. Voorter, M.C. Kik, E.M. van den-Loonen Berg High-resolution HLA typing for the DQB1 gene by sequence-based typing Tissue Antigens 51 1998 80