Molecular identification of mumps virus genotypes from clinical samples: Standardized method of analysis

Journal of Clinical Microbiology

Volumn 43, Issue 4, 2005, Pages 1869-1878

  Palacios, G ^a   Jabado, O ^a   Cisterna, D ^c   De Ory, F ^b   Renwick, N ^a   Echevarria, J E ^b   Castellanos, A ^b   Mosquera, M ^b   Freire, M C ^c   Campos, R H ^d   Lipkin, W I ^a  

^a Columbia University ^*  (United States)

^b Inst Nac Enferm I   (Argentina)

^c INSTITUTO DE SALUD CARLOS III   (Spain)

^d UNIVERSIDAD DE BUENOS AIRES   (Argentina)

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT; VIRUS PROTEIN; VIRUS RNA;

ACCURACY; AMINO ACID SEQUENCE; ARGENTINA; ARTICLE; CEREBROSPINAL FLUID; CHILD; COMPUTER ANALYSIS; CONTROLLED STUDY; FEMALE; GENE TARGETING; GENETIC ANALYSIS; GENETIC CODE; GENOTYPE; HUMAN; MALE; MOLECULAR GENETICS; MOLECULAR PHYLOGENY; MUMPS VIRUS; NEWBORN; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA ANALYSIS; SEQUENCE ANALYSIS; UNINDEXED SEQUENCE; VIRAL GENETICS; VIRUS GENE; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS ISOLATION; VIRUS STRAIN;

AMINO ACID SEQUENCE; BASE SEQUENCE; CHILD; CHILD, PRESCHOOL; ENCEPHALITIS, VIRAL; FEMALE; GENOTYPE; HUMANS; INFANT; INFANT, NEWBORN; MALE; MENINGITIS, ASEPTIC; MOLECULAR SEQUENCE DATA; MUMPS; MUMPS VIRUS; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS;

EID: 20144389250     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.43.4.1869-1878.2005     Document Type: Article

References (35)

1. Afzal, M. A., J. Buchanan, J. A. Dias, M. Cordeiro, M. L. Bentley, C. A. Shorrock, and P. D. Minor. 1997. RT-PCR based diagnosis and molecular characterisation of mumps viruses derived from clinical specimens collected during the 1996 mumps outbreak in Portugal. J. Med. Virol. 52:349-353.
2. Afzal, M. A., J. Buchanan, A. B. Heath, and P. D. Minor. 1997. Clustering of mumps virus isolates by SH gene sequence only partially reflects geographical origin. Arch. Virol. 142:227-238.
3. Afzal, M. A., G. D. Elliott, B. K. Rima, and C. Orvell. 1990. Virus and host cell-dependent variation in transcription of the mumps virus genome. J. Gen. Virol. 71:615-619.
4. Bang, H., and J. Bang. 1943. Involvement of the central nervous system in mumps. Acta Med. Scand. 113:487-505.
5. Briss, P. A., L. J. Fehrs, R. A. Parker, P. F. Wright, E. C. Sannella, R. H. Hutcheson, and W. Schaffner. 1994. Sustained transmission of mumps in a highly vaccinated population: assessment of primary vaccine failure and waning vaccine-induced immunity. J. Infect. Dis. 169:77-82.
6. Casas, I., L. Powell, P. E. Klapper, and G. M. Cleator. 1995. New method for the extraction of viral RNA and DNA from cerebrospinal fluid for use in the polymerase chain reaction assay. J. Virol. Methods 53:25-36.
7. Committee, I. P. A. 1997. Mumps prevention. Morbid. Mortal. Wkly. Rep. 38:397-400.
8. Elango, N., T. M. Varsanyi, J. Kovamees, and E. Norrby. 1988. Molecular cloning and characterization of six genes, determination of gene order and intergenic sequences and leader sequence of mumps virus. J. Gen. Virol. 69:2893-2900.
9. Elliott, G. D., M. A. Afzal, S. J. Martin, and B. K. Rima. 1989. Nucleotide sequence of the matrix, fusion and putative SH protein genes of mumps virus and their deduced amino acid sequences. Virus Res. 12:61-75.
10. Germann, D., A. Strohle, K. Eggenberger, C. A. Steiner, and L. Matter. 1996. An outbreak of mumps in a population partially vaccinated with the Rubini strain. Scand. J. Infect. Dis. 28:235-238.
11. Inou, Y., T. Nakayama, N. Yoshida, H. Uejima, K. Yuri, M. Kamada, T. Kumagai, H. Sakiyama, A. Miyata, H. Ochiai, T. Ihara, T. Okafuji, T. Nagai, E. Suzuki, K. Shimomura, Y. Ito, and C. Miyazaki. 2004. Molecular epidemiology of mumps virus in Japan and proposal of two new genotypes. J. Med. Virol. 73:97-104.
12. Jin, L., S. Beard, and D. W. Brown. 1999. Genetic heterogeneity of mumps virus in the United Kingdom: identification of two new genotypes. J. Infect. Dis. 180:829-833.
13. Jin, L., D. W. Brown, P. A. Litton, and J. M. White. 2004. Genetic diversity of mumps virus in oral fluid specimens: application to mumps epidemiological study. J. Infect. Dis. 189:1001-1008.
14. Kashiwagi, Y., T. Takami, T. Mori, and T. Nakayama. 1999. Sequence analysis of F, SH, and HN genes among mumps virus strains in Japan. Arch. Virol. 144:593-599.
15. Lee, J. Y., Y. Y. Kim, G. C. Shin, B. K. Na, J. S. Lee, H. D. Lee, J. H. Kim, W. J. Kim, J. Kim, C. Kang, and H. W. Cho. 2003. Molecular characterization of two genotypes of mumps virus circulated in Korea during 1998-2001. Virus Res. 97:111-116.
16. Minor, P. D. 1997. Laboratory tests for mumps vaccines. Biologicals 25:35-40.
17. Montes, M., G. Cilla, J. Artieda, D. Vicente, and M. Basterretxea. 2002. Mumps outbreak in vaccinated children in Gipuzkoa (Basque Country), Spain. Epidemiol. Infect. 129:551-556.
18. Needleman, S. B., and C. D. Wunsch. 1970. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48:443-453.
19. Nojd, J., T. Tecle, A. Samuelsson, and C. Orvell. 2001. Mumps virus neutralizing antibodies do not protect against reinfection with a heterologous mumps virus genotype. Vaccine 19:1727-1731.
20. Oberste, M. S., K. Maher, D. R. Kilpatrick, M. R. Flemister, B. A. Brown, and M. A. Pallansch. 1999. Typing of human enteroviruses by partial sequencing of VP1. J. Clin. Microbiol. 37:1288-1293.
21. Orvell, C., M. Kalantari, and B. Johansson. 1997. Characterization of five conserved genotypes of the mumps virus small hydrophobic (SH) protein gene. J. Gen. Virol. 78:91-95.
22. Palacios, G., I. Casas, A. Tenorio, and C. Freire. 2002. Molecular identification of enterovirus by analyzing a partial VP1 genomic region with different methods. J. Clin. Microbiol. 40:182-192.
23. Poggio, G. P., C. Rodriguez, D. Cisterna, M. C. Freire, and J. Cello. 2000. Nested PCR for rapid detection of mumps virus in cerebrospinal fluid from patients with neurological diseases. J. Clin. Microbiol. 38:274-278.
24. Rice, P., I. Longden, and A. Bleasby. 2000. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 16:276-277.
25. Takeuchi, K., K. Tanabayashi, M. Hishiyama, and A. Yamada. 1996. The mumps virus SH protein is a membrane protein and not essential for virus growth. Virology 225:156-162.
26. Takeuchi, K., K. Tanabayashi, M. Hishiyama, A. Yamada, and A. Sugiura. 1991. Variations of nucleotide sequences and transcription of the SH gene among mumps virus strains. Virology 181:364-366.
27. Tecle, T., B. Bottiger, C. Orvell, and B. Johansson. 2001. Characterization of two decades of temporal co-circulation of four mumps virus genotypes in Denmark: identification of a new genotype. J. Gen. Virol. 82:2675-2680.
28. Tecle, T., B. Johansson, A. Jejcic, M. Forsgren, and C. Orvell. 1998. Characterization of three co-circulating genotypes of the small hydrophobic protein gene of mumps virus. J. Gen. Virol. 79:2929-2937.
29. Tecle, T., A. Mickiene, B. Johansson, L. Lindquist, and C. Orvell. 2002. Molecular characterisation of two mumps virus genotypes circulating during an epidemic in Lithuania from 1998 to 2000. Arch. Virol. 147:243-253.
30. Uchida, K., M. Shinohara, S. Shimada, Y. Segawa, and Y. Hoshino. 2001. Characterization of mumps virus isolated in Saitama Prefecture, Japan, by sequence analysis of the SH gene. Microbiol. Immunol. 45:851-855.
31. Utz, S., J. L. Richard, S. Capaul, H. C. Matter, M. G. Hrisoho, and K. Muhlemann. 2004. Phylogenetic analysis of clinical mumps virus isolates from vaccinated and non-vaccinated patients with mumps during an outbreak, Switzerland 1998-2000. J. Med. Virol. 73:91-96.
32. Ward, C. W., N. M. McKern, M. J. Frenkel, and D. D. Shukla. 1992. Sequence data as the major criterion for potyvirus classification. Arch. Virol. Suppl. 5:283-297.
33. Wharton, M., S. L. Cochi, R. H. Hutcheson, J. M. Bistowish, and W. Schaffner. 1988. A large outbreak of mumps in the postvaccine era. J. Infect. Dis. 158:1253-1260.
34. Wu, L., Z. Bai, Y. Li, B. K. Rima, and M. A. Afzal. 1998. Wild type mumps viruses circulating in China establish a new genotype. Vaccine 16:281-285. (Erratum, 16:759.)
35. Yeo, R. P., M. A. Afzal, T. Forsey, and B. K. Rima. 1993. Identification of a new mumps virus lineage by nucleotide sequence analysis of the SH gene of ten different strains. Arch. Virol. 128:371-377.