Complementary DNA cloning and molecular evolution of opine dehydrogenases in some marine invertebrates

Marine Biotechnology

Volumn 6, Issue 5, 2004, Pages 493-502

  Kimura, Tomohiro ^a   Nakano, Toshiki ^a   Yamaguchi, Toshiyasu ^a   Sato, Minoru ^a   Ogawa, Tomohisa ^a   Muramoto, Koji ^a   Yokoyama, Takehiko ^b   Kan No, Nobuhiro ^b   Nagahisa, Eizou ^b   Janssen, Frank ^c   Grieshaber, Manfred K ^c  

^a TOHOKU UNIVERSITY   (Japan)

^b KITASATO UNIVERSITY   (Japan)

^c HEINRICH HEINE UNIVERSITY   (Germany)

Author keywords

cDNA cloning; Marine invertebrates; Molecular evolution; Opine dehydrogenases

Indexed keywords

AMINO ACIDS; DNA; DNA SEQUENCES; ECOSYSTEMS; ENZYMES; OCEAN HABITATS;

AMINO ACID SEQUENCES; MOLECULAR EVOLUTION; PHYLOGENETIC TREES;

CLONING;

BIOTECHNOLOGY; ENZYME; GENE EXPRESSION;

ARABELLA IRICOLOR; BIVALVIA; CEPHALOPODA; HALIOTIS CORRUGATA; HALIOTIS DISCUS HANNAI; INVERTEBRATA; LOLIGO OPALESCENS; LOLIGO VULGARIS; MERETRIX LUSORIA; MIZUHOPECTEN YESSOENSIS; PATINOPECTEN; PECTEN MAXIMUS; PECTINIDAE; PSEUDOCARDIUM SACHALINENSIS; SEPIA OFFICINALIS; SEPIIDAE; SPISULA;

COMPLEMENTARY DNA; OXIDOREDUCTASE; PRIMER DNA; TAUROPINE DEHYDROGENASE;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA SEQUENCE; GENETICS; MOLECULAR CLONING; MOLECULAR EVOLUTION; MOLECULAR GENETICS; MOLLUSC; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYCHAETA; SEQUENCE HOMOLOGY;

AMINO ACID OXIDOREDUCTASES; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; CLUSTER ANALYSIS; DNA PRIMERS; DNA, COMPLEMENTARY; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLLUSCA; OXIDOREDUCTASES; PHYLOGENY; POLYCHAETA; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

EID: 20144388937     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-004-2700-6     Document Type: Article

References (20)

1. K.L. Britton Y. Asano D.W. Rice 1998 Crystal structure and active site location of N-(1-D-carboxylethyl)-L-norvaline dehydrogenase Nat Struct Boil 5 593 601
2. P. Chomczynski N. Sacchi 1987 Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction Anal Biochem 162 156 159
3. T. Dairi Y. Asano 1995 Cloning, nucleotide sequencing, and expression of an opine dehydrogenase gene from Arthrobacter sp. strain 1C Appl Environ Microbiol 61 3169 3171
4. J. Felsenstein 1985 Confidence-limits on phylogenies-an approach using the bootstrap Evolution 39 783 791
5. G. Gäde E. Zebe 1973 Über den Anaerobiosestoffwechsel von Molluskenmuskeln J Comp Physiol 85 291 301
6. M.K. Grieshaber I. Hardewig U. Kreutzer H.O. Pörtner 1994 Physiological and metabolic responses to hypoxia in invertebrates Rev Physiol Biochem Pharmacol 125 43 147
7. M. Hattori Y. Sakaki 1986 Dideoxy sequencing method using denatured plasmid templates Anal Biochem 152 232 238
8. Jukes, T.H., Cantor, C.R. (1969) "Evolution of protein molecules" In: Manro, H.N. (ed.). New York, N.Y: Mammalian Protein Metabolism, Academic Press, pp 21-123
9. N. Kanno K. Kamimura E. Nagahisa M. Sato Y. Sato 1996a Application of isoelectric focusing in thin-layer polyacrylamide gels to the study of opine dehydrogenases in marine invertebrates Fisheries Sci 62 122 125
10. N. Kanno M. Sato E. Nagahisa Y. Sato 1996b Tauropine dehydrogenase from the sandworm Arabella iricolor (Polychaeta: Errantia): purification and characterization Comp Biochem Physiol 114B 409 416
11. M. Kimura 1969 The rate of molecular evolution considered from the standpoint of population genetics Proc Natl Acad Sci U S A 63 1181 1188
12. U. Kreutzer B.R Siegmund M.K. Grieshaber 1985 Role of coupled substrates and alternative end products durinn hypoxia tolerance in marine invertebrates Mol Physiol 8 371 392
13. U. Kreutzer B.R. Siegmund M.K. Grieshaber 1989 Parameters controlling opine formation during muscular activity and environmental hypoxia J Comp Physiol B 159 617 628
14. G.P. Manchenko D.J. McGoldrick D. Hedgecock 1998 Genetic basis of opine dehydrogenase activities in the Pacific oyster, Crassostrea gigas Comp Biochem Physiol 121B 251 255
15. N. Saito M. Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425
16. Salvini-Plawen, L.V., Steiner, G. (1996) "Synapomorphies and plesiomorphies in higher classification of Mollusca" Origin and Evolutionary Radiation of the Mollusca, Taylor, J.D. (ed.), New York, N.Y.: Oxford University Press, pp 29-51
17. M. Sato M. Takeuchi N. Kanno E. Nagahisa Y. Sato 1993 Distribution of opine dehydrogenase and lactate dehydrogenase activity in marine animals Comp Biochem Physiol 106B 955 960
18. J. Schell M. van Montagu M. de Beuckeleer M. de Block A. Depicker M. de Wilde C. Genetello J.P. Hernalsteens M. Holsters J. Serinck B. Silva F. van Vliet R. Villarroel 1979 Interactions and DNA transfer between Agrobacterium tumefaciens, the Ti-plasmid and the plant host Proc R Soc Land B Biol Sci 204 251 266
19. J.D. Thompson D.G. Higgins T.J. Gibson 1994 CLUSTAL-W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680
20. R.K. Wierenga M.C.H. De Maeyer W.G.J. Hol 1985 Interactions of pyrophosphate moieties with alpha-helices in dinucleotide binding proteins Biochemistry 24 1346 1357