Patterns of genetic variation do not correlate with geographical distance in the reef-building coral Pocillopora meandrina in the South Pacific

Molecular Ecology

Volumn 14, Issue 7, 2005, Pages 1861-1868

  Magalon, H ^a   Adjeroud, M ^b,d,e   Veuille, M ^a,c,e  

^a PSL RESEARCH UNIVERSITY   (France)

^b UNIVERSITÉ DE PERPIGNAN   (France)

^c MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^d Centre de Biologie et d Ecologie Tropicale et Méditerranéenne   (French Polynesia)

^e NONE

Author keywords

Coral; French Polynesia; Genetic structuring; Microsatellite; Pocillopora

Indexed keywords

MICROSATELLITE DNA;

ANIMAL; ANTHOZOA; CLUSTER ANALYSIS; COMPARATIVE STUDY; DEMOGRAPHY; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HETEROZYGOTE DETECTION; PACIFIC OCEAN; POPULATION DYNAMICS; POPULATION GENETICS; REVIEW;

ANIMALS; ANTHOZOA; CLUSTER ANALYSIS; DEMOGRAPHY; GENE FREQUENCY; GENETICS, POPULATION; GEOGRAPHY; HETEROZYGOTE DETECTION; LINKAGE DISEQUILIBRIUM; MICROSATELLITE REPEATS; PACIFIC OCEAN; POPULATION DYNAMICS; VARIATION (GENETICS);

ANTHOZOA; MEANDRINA; POCILLOPORA; POCILLOPORA MEANDRINA;

EID: 20144382854     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2005.02430.x     Document Type: Review

References (65)

1. Adjeroud M, Tsuchiya M (1999) Genetic variation and clonal structure in the scleractinian coral Pocillopora damicornis in the Ryukyu Archipelago, southern Japan. Marine Biology, 134 (4), 753-760.
2. Ayre DJ, Dufty S (1994) Evidence for restricted gene flow in the viviparous coral Seriatopora hystrix on Australia's Great Barrier Reef. Evolution, 48 (4), 1183-1201.
3. Ayre DJ, Hughes TP (2000) Genotypic diversity and gene flow in brooding and spawning corals along the Great Barrier Reef, Australia. Evolution, 54 (5), 1590-1605.
4. Ayre DJ, Hughes TP, Standish RJ (1997) Genetic differentiation, reproductive mode, and gene flow in the brooding coral Pocillopora damicornis along the Great Barrier Reef, Australia. Marine Ecology Progress Series, 159, 175-187.
5. Ayre DJ, Resing JM (1986) Sexual and asexual production of planulae in reef corals. Marine Biology, 90, 187-190.
6. Bastidas C, Benzie JAH, Uthicke S, Fabricius KE (2001) Genetic differentiation among populations of broadcast spawning soft coral, Sinularia flexibilis, on the Great Barrier Reef. Marine Biology, 138, 517-525.
7. Benzie JAH, Haskell A, Lehman H (1995) Variation in the genetic composition of coral (Pocillopora damicornis and Acropora palifera) population from different reef habitats. Marine Biology, 121, 731-739.
8. Bernardi G, Holbrook SJ, Schmitt RJ (2001) Gene flow at three spatial scales in a coral reef fish, the three-spot dascyllus, Dascyllus trimaculatus. Marine Biology, 138, 457-465.
9. Bierne N, Launey S, Naciri-Graven Y, Bonhomme F (1998) Early effect of inbreeding as revealed by microsatellite analyses on Ostrea edulis larvae. Genetics, 148, 1893-1906.
10. Brazeau DA, Gleason DF, Morgan ME (1998) Self-fertilization in brooding hermaphroditic Carribean corals: evidence from molecular markers. Journal of Experimental Marine Biology and Ecology, 231, 225-238.
11. Carlon DB (1999) The evolution of mating systems in tropical reef corals. Trends in Ecology and Evolution, 14, 491-495.
12. David P, Delay B, Berthou P, Jarne P (1995) Alternative models of allozyme-associated heterosis in the marine bivalve Spisula ovalis. Genetics, 139, 1719-1726.
13. Faure G (1989) Degradation of coral reefs at Moorea Island, French Polynesia by Acanthaster planci. Journal of Coastal Research, 5, 295-305.
14. Gaffney PM, Scott TM, Koehn RK, Diehl WJ (1990) Interrelationships heterozygosity, growth rate and heterozygote deficiencies in the coot clam, Mulina lateralis. Genetics, 124, 687-699.
15. Guo S, Thompson E (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics, 48, 361-372.
16. Hardy OJ, Vekemans X (2002) SPAGEDI: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes, 2, 618-620.
17. Hellberg ME (1996) Dependence on gene flow on geographic distance in two solitary corals with different larval dispersal capabilities. Evolution, 50, 1167-1175.
18. Highsmith RC (1982) Reproduction by fragmentation in corals. Marine Ecology Progress Series, 7, 207-226.
19. Hoegh-Guldberg O, Salvat B (1995) Periodic mass-bleaching and elevated sea temperatures: bleaching of outer reef slope communities in Moorea, French Polynesia. Marine Ecology Progress Series, 121, 181-190.
20. Jokiel PL (1984) Long distance dispersal of reef corals by rafting. Coral Reefs, 3, 113-116.
21. Kramarsky-Winter E, Fine M, Loya Y (1997) Coral polyp expulsion. Nature, 387, 137.
22. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinfomatics, 12, 1244-1245.
23. Le Goff MC, Rogers AD (2002) Characterization of 10 microsatellite loci for the deep-sea coral Lophelia pertusa (Linneaus 1758). Molecular Ecology Notes, 2, 164-166.
24. Le Goff-Vitry MC, Pybus OG, Rogers AD (2004a) Genetic structure of the deep-sea coral Lophelia pertusa in the northeast Atlantic revealed by microsatellites and internal transcribed spacer sequences. Molecular Ecology, 13, 537-549.
25. Le Goff-Vitry MC, Rogers AD, Baglow D (2004b) A deep-sea slant on the molecular phylogeny of the Scleractinia. Molecular Phylogenetics and Evolution, 30, 167-177.
26. Lenfant P, Planes S (2002) Temporal genetic changes between cohorts in a natural population of a marine fish, Diplodus sargus. Biology Journal of the Linnean Society, 76, 9-20.
27. Lopez JV, Kersanach R, Rehner SA, Knowlton N (1999) Molecular determination of species boundaries in corals: genetic analysis of the Montastraea annularis complex using amplified fragment length polymorphisms and a microsatellite marker. Biological Bulletin, 196, 80-93.
28. MacKenzie JB, Miunday L, Willis B, Miller DJ, Van Oppen MJ (2004) Unexpected patterns of genetic structuring among locations but no colour morphs in Acropora nasuta (Cnidaria; Scleractinia). Molecular Ecology, 13, 9-20.
29. Magalon H, Samadi S, Richard M, Adjeroud M, Veuille M (2004) Development of coral and zooxanthella-specific microsatellites in three species of Pocillopora (Cnidaria, Scleractinia) from French Polynesia. Molecular Ecology Notes, 4, 206-208.
30. Maier E, Tollrian R, Nürnberger B (2001) Development of species-specific markers in an organism with endosymbionts: microsatellites in the scleractinian coral Seriatopora hystrix. Molecular Ecology Notes, 1, 157-159.
31. Marquez LM, MacKenzie JB, Takabayashi M, Smith CR, Chen CA (2003) Difficulties in obtaining microsatellites from acroporid corals. Proceedings of the 9th International Coral Reef Symposium, 1, 139-143.
32. Miller DJ, Ayre DJ (2004) The role of sexual and asexual reproduction in structuring high latitude populations of the reef coral Pocillopora damicornis. Heredity, 92, 557-568.
33. Miller KJ, Howard CG (2004) Isolation of microsatellites from two species of scleractinian coral. Molecular Ecology Notes, 4, 11-13.
34. Mumby PJ, Chisholm JRM, Edwards AJ, Andrefouet S, Jaubert J (2001) Cloudy weather may have saved Society Island reef corals during the 1998 ENSO event. Marine Ecology Progress Series, 222, 209-216.
35. Nei M (1978) Estimation of average heterozygosity and genetic distance for small number of individuals. Genetics, 89, 583-590.
36. Nishikawa A, Katoh M, Sakai K (2003) Larval settlement rates and gene flow of broadcast-spawning (Acropora tenuis) and planula-brooding (Stylophora pistillata) corals. Marine Ecology Progress Series, 256, 87-97.
37. Nyström M, Folke C, Moberg F (2000) Coral reef disturbance and resilience in a human-dominated environment. Trends in Ecology and Evolution, 15, 413-417.
38. Palumbi SR (1992) Marine speciation on a small planet. Trends in Ecology and Evolution, 7, 114-118.
39. Palumbi SR (1994) Genetic divergence, reproductive isolation, and marine speciation. Annual Reviews of Ecology and Systematics, 25, 547-572.
40. Parsons KE (1996) The genetic effects of larval dispersal depend on spatial scale and habitat characteristics. Marine Biology, 126, 403-414.
41. Pemberton JM, Slate J, Bancroft DR, Barrett JA (1995) Non-amplifying alleles at microsatellite loci: a caution for parentage and population studies. Molecular Ecology, 4, 249-252.
42. Piry S, Alapetite A, Cornuet J-M, Paetkau D, Baudouin L, Estoup A (2003) GENECLASS2: a software for genetic assignment and first generation migrants detection. Journal of Heredity, 95, 536-539.
43. Planes S (1993) Genetic differentiation in relation to restricted larval dispersal of the convict surgeonfish Acanthurus triostegus. French Polynesia. Marine Ecology Progress Series, 98, 237-246.
44. Planes S, Fauvelot C (2002) Isolation by distance and vicariance drive genetic structure of a coral. Evolution, 56, 378-399.
45. Planes S, Galzin R, Bonhomme F (1996) A genetic metapopulation model for reef fishes in oceanic islands: the case of the surgeonfish, Acanthurus triostegus. Journal of Evolutionary Biology, 9, 103-117.
46. Queller DC, Goodnight KF (1989) Estimating relatedness using genetic markers. Evolution, 43, 258-275.
47. Raymond M, Rousset F (1995) GENEPOP (version 1.2): a population genetics software for exact tests and ecuminicism. Journal of Heredity, 86, 248-249.
48. Rice WR (1989) Analyzing tables of statistical tests. Evolution, 43, 223-225.
49. Richmond RH (1993) Coral reefs: present problems and future concerns resulting from anthropogenic disturbance. American Zoologist, 33, 524-536.
50. Ridgway T, Hoegh-Guldberg O, Ayre DJ (2001) Panmixia in Pocillopora verrucosa from South Africa. Marine Biology, 139, 175-181.
51. Rougerie F, Wauthy B (1986) L'Ocean qui Nous Entoure. Encyclopédie de la Polynésie, Vol. I: les îles océaniques, pp. 73-78. Multipress, Papeete, Polynésie Française.
52. Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219-1228.
53. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN, version 2.000: A Software for Population Genetics Data Analysis. Genetics and Biometry Laboratory. University of Geneva, Switzerland.
54. Severance EG, Szmant AM, Karl SA (2004) Microsatellite loci isolated from the Caribbean coral, Montastraea annularis. Molecular Ecology Notes, 4, 74-76.
55. Shlesinger Y, Goulet TL, Loya Y (1998) Reproductive patterns of scleractinian corals in the northern Red Sea. Marine Biology, 132, 691-701.
56. Slatkin M (1993) Isolation by distance in equilibrium and non-equilibrium populations. Evolution, 47, 264-279.
57. Sokal RR, Rolf FJ (1995) Biometry, 2nd edn. Freeman Co, New York.
58. Stoddart JA (1983) Asexual production of planulae in the coral Pocillopora damicornis. Marine Biology, 76, 279-284.
59. Stoddart JA (1984a) Genetic differentiation amongst populations of the coral Pocillopora damicornis off southwestern Australia. Coral Reefs, 3, 149-156.
60. Stoddart JA (1984b) Genetical structure within populations of the coral Pocillopora damicornis. Marine Biology, 81, 19-30.
61. Veron J (2000) Corals of the World. Australian Institute of Marine Science, Townsville.
62. Ward S (1992) Evidence for broadcast spawning as well as brooding in the scleractinian coral Pocillopora damicornis. Marine Biology, 112 (4), 641-646.
63. Weir B, Cockerham C (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
64. Whitaker K (2004) Non-random mating and population genetic subdivision of two broadcasting corals at Ningaloo Reef, Western Australia. Marine Biology, 144, 593-603.
65. Willis BL, Babcock RC, Harrison PL, Wallace CC (1997) Experimental hybridization and breeding incompatibilities within the mating systems of mass spawning reef corals. Coral Reefs, 16 (Suppl.), S53-S65.