An overview of the trilinos project

ACM Transactions on Mathematical Software

Volumn 31, Issue 3, 2005, Pages 397-423

  Heroux, Michael A ^a,c   Bartlett, Roscoe A ^a,c   Howle, Vicki E ^a,d   Hoekstra, Robert J ^a,c   Hu, J Jonathan ^a,d   Kolda, Tamara G ^a,d   Lehoucq, Richard B ^a,c   Long, Kevin R ^a,d   Pawlowski, Roger P ^a,c   Phipps, Eric T ^a,c   Salinger, Andrew G ^a,c   Thornquist, Heidi K ^a,c   Tuminaro, Ray S ^a,d   Willenbring, James M ^a,c   Williams, Alan ^a,c   Stanley, Kendall S ^b  

^a SANDIA NATIONAL LABORATORIES   (United States)

^b OBERLIN COLLEGE   (United States)

^c SANDIA NATIONAL LABORATORIES   (United States)

^d SANDIA NATIONAL LABORATORIES   (United States)

Author keywords

Interfaces; Software framework; Software quality engineering

Indexed keywords

NONLINEAR SOLVERS; SOFTWARE FRAMEWORK; SOFTWARE QUALITY ENGINEERING; TRILINOS PROJECT;

ALGORITHMS; COMPUTER SIMULATION; INFORMATION RETRIEVAL SYSTEMS; INTERFACES (COMPUTER); PROBLEM SOLVING; SOFTWARE ENGINEERING;

PROJECT MANAGEMENT;

EID: 20044393250     PISSN: 00983500     EISSN: 00983500     Source Type: Journal    
DOI: 10.1145/1089014.1089021     Document Type: Review

References (63)

1. A. LUMSDAINE, E. A. 2004. The matrix template library home page. Go online to http://www.osl.iu.edu/research/mtl.
2. ALPATOV, P., BAKER, G., EDWARDS, C., GUNNELS, J., MORROW, G., OVERFELT, J., VAN DE GEIJN, R., AND WU, Y.-J. J. 1997. Plapack: Parallel linear algebra package design overview. In Proceedings of the 1997 ACM IEEE Conference on Supercomputing (CDROM, San Jose, CA). ACM Press, New York, NY, 1-16.
3. AMESTOY, P. R., DUFF, I. S., L'EXCELLENT, J.-Y., AND KOSTER, J. 2003. MUMPS home page. Go online to http://www.enseeiht.fr/lima/apo/MUMPS.
4. ANDERSON, E., BAI, Z., BISCHOF, C., DEMMEL, J., DONGARRA, J., CROZ, J. D., GREENBAUM, A., HAMMARLING, S., MCKENNEY, A., OSTROUCHOV, S., AND SORENSEN, D. 1995. LAPACK Users' Guide, 2nd ed. SIAM Press, Philadelphia, PA.
5. BAILEY, D. H., HIDA, Y., LI, X. S., AND THOMPSON, B. 2002. ARPREC: An arbitrary precision computation package. Tech. rep. LBNL-53651. Lawrence Berkeley National Laboratory, Berkeley, CA.
6. BALAY, S., GHOPP, W., MCINNES, L., AND SMITH, B. 1997. Efficient management of parallelism in object oriented numerical software libraries. In Modern Software Tools in Scientific Computing, E. Arge, A. M. Bruaset, and H. P. Langtangen, Eds. Birkhauser Press, New York, NY, 163-202.
7. BALAY, S., GROPP, W., MCINNES, L., AND SMITH, B. 1998a. PETSc 2.0 users manual. Tech. rep. ANL-95/11-Revision 2.0.22. Argonne National Laboratory, Argonne, IL.
8. BALAY, S., GROPP, W., MCINNES, L., AND SMITH, B. 1998b. PETSc home page. Go online to http://www.mcs.anl.gov/petsc.
9. BARTLETT, R. A., HEROUX, M. A., AND LONG, K. R. 2003. TSFCore 1.0: A package of light-weight object-oriented abstractions for the development of abstract numerical algorithms and interfacing to linear algebra libraries and applications. Tech. rep. SAND2003-1378. Sandia National Laboratories, Albuquerque, NM.
10. BLACKFORD, L. S., CHOI, J., CLEARY, A., D'AZEVEDO, E., JEMMEL, J., DHILLON, I., DONGARRA, J., HAMMARLING, S., HENRY, G., PETITET, A., STANLEY, K., WALKER, D., AND WHALEY, R. C. 1997. ScaLAPACK Users' Guide. SIAM Press, Philadelphia, PA.
11. BOCHEV, P. B., GARASI, C., HU, J. J., ROBINSON, A. C., AND TUMINARO, R. S. 2003. An improved algebraic multigrid method for solving Maxwell's equations. SIAM J. Sci. Comput. 25, 2.
12. BOMAN, E., DEVINE, K., HEAPHY, R., HENDRICKSON, B., HEROUX, M., AND PREIS, R. 2004. Ldrd report: Parallel repartitioning for optimal solver performance. Tech. rep. SAND2004-0365. Sandia National Laboratories, Albuquerque, NM.
13. CARPENTER, B., GETOV, V., JUDD, G., SKJELLUM, A., AND Fox, G. 2000. MPJ: MPI-like message passing for Java. Concurrency Computat.: Pract. Exper. 12, 11 (Sept.), 1019-1038.
14. DAVIS, T. 2003. UMFPACKhome page. Go online to http://www.else.ufl.edu/ research/sparse/umfpack.
15. DAVIS, T. AND STANLEY, K. 2004. Sparse lu factorization of circuit simulation matrices. Go online to http://www.cise.ufl.edu/~davis/techreports/ KLU/pp04.pdf.
16. DAY, D. AND HEROUX, M. A. 2001. Solving complex-valued linear systems via equivalent real formulations. SIAM J. Sci. Comput. 23, 2, 480-498.
17. DEVINE, K. D., HENDRICKSON, B. A., BOMAN, E. G., JOHN, M. M. S., AND VAUGHAN, C. 1999. Zoltan: A dynamic load-balancing library for parallel applications - user's guide. Tech. rep. SAND99-1377. Sandia National Labo ratories, Albuquerque,
18. NM. DONGARRA, J. J., BUNCH, J., MOLER, C., AND STEWART, G. 1979. LINPACK Users' Guide. SIAM Press, Philadelphia, CA.
19. DOOLIN, D. M., DONGARRA, J., AND SEYMOUR, K. 1998. Jlapack - compiling lapack Fortran to Java. Go online to http://icl.cs.utk.edu/projects/f2j/ f2jreport/f2jreport.html.
20. ELMAN, H., HOWLE, V. E., SHADID, J. N, AND TUMINARO, R. S. 2003. A parallel block multi-level preconditioner for the 3d incompressible Navier-Stokes equations. J. Computat. Phys. 187, 2, 504-523.
21. FORUM, C. 2004. The common component architecture home page. Go online to http://www.cca-forum.org.
22. FREE SOFTWARE FOUNDATION. 2004a. Autoconf home page. Go online to http://www.gnu.org/software/autoconf.
23. FREE SOFTWARE FOUNDATION. 2004b. Automake home page. Go online to http://www.gnu.org/software/automake.
24. FREE SOFTWARE FOUNDATION. 2004c. Gnu CVS home page. Go online to http://www.gnu.org/software/cvs.
25. FREE SOFTWARE FOUNDATION. 2004d. Gnu m4 home page. Go online to http://www.gnu.org/software/m4.
26. FREE SOFTWARE FOUNDATION. 2004e. Gnu mailman home page. Go online to http://www.gnu.org/software/mailman/mailman.html.
27. FREE SOFTWARE FOUNDATION. 2004f. Libtool home page. Go online to http://www.gnu.org/ soft ware/libtool.
28. GAMMA, E., HELM, R., JOHNSON, R., AND VLISSIDES, J. 1994. Design Patterns, Elements of Reusable Object Oriented Software. Addison-Wesley, Reading, MA.
29. GRANLUND, T. 2004. GNU MP: The GNU Multiple Precision Arithmetic Library, 4.1.3 ed. SWOX AB, Stockholm, Sweden.
30. HEROUX, M. A. 2002. Epetra Reference Manual, 2.0 ed. Go online to http://software.sandia.gov/trilinos/packages/epetra/doxygen/latex/ EpetraReferenceManual.pdf.
31. HEROUX, M. A. 2004. Trilinos home page. Go online to http://software. sandia.gov/trilinos.
32. HEROUX, M. A., HOEKSTRA, R. J., AND WILLIAMS, A. B. 2004. An object model for parallel numerical linear algebra computations. Tech. rep. Sandia National Laboratories, Albuquerque, NM. In preparation.
33. HEROUX, M. A., WILLENBRING, J. M., AND HEAPHY, R. 2003. Trilinos Developers Guide Part II: ASCI Software Quality Engineering Practices Version 1.0. Tech. rep. SAND2003-1899. Sandia National Laboratories, Albuquerque, NM.
34. KAY, D., LOGHIN, D., AND WATHEN, A. 2002. A preconditioner for the steady-state navier-stokes equations. SIAM J. Sci. Comput. 24, 1, 237-256.
35. KOLDA, T. G. AND PAWLOWSKI, R. P. 2004. Nox home page. Go online to http://software.sandia. gov/nox.
36. KOTULSKI, J. D. 2004. Pliris home page. Go online to http://software. sandia.gov/Trilinos/ packages/pliris.
37. LI, X. AND DEMMEL, J. 2003. SuperLU home page, http://crd.lbl.gov/xiaoye/ SuperLU/.
38. MOREIRA, J. E., MIDKIFF, S. P., GUPTA, M., ARTIGAS, P. V., WU, P., AND ALMASI, G. 2001. The NINJA project. Commun. ACM 44, 10 (Oct.), 102-109.
39. MYERS, N. C. 1995. Traits: A new and useful template technique. C++ Rep. 7, 5 (June), 32-35.
40. NELISSE, A., MAASSEN, J., KIELMANN, T., AND BAL, H. E. 2003. Ccj: Object-based message passing and collective communication in Java. Concurrency Computat.: Pract. Exper. 15, 3-5, 341-369.
41. OLDHAM, J. D. 2002. POOMA: A C++ Toolkit for High-Performance Parallel Scientific Computing, 1.01 ed. CodeSourcery, LLC. Go online to http://www.codesourcery.com/public/pooma/manual.pdf.
42. QUARLES, T. PEDERSON, D., NEWTON, R., SANGIOVANNI-VINCENTELLI, A., AND WAYNE, C. 2003. SPICE home page. Go online to http://bwrc.eecs.berkeley.edu/ Classes/IcBook/SPICE.
43. RAGHAVAN, P. 2003. DSCPACK home page. Go online to http://www.cse.psu. edu/~raghavan/Dscpack.
44. SALINGER, A. G., DEVINE, K. D., HENNIGAN, G. L., MOFFAT, H. K., HUTCHINSON, S. A., AND SHADID, J. N. 1996. MPSalsa: A finite element computer program for reacting flow problems, part 2 - user's guide. Tech. rep. SAND96-2331. Sandia National Laboratories, Albuquerque,
45. NM. SALINGER, A. G., LEHOUCQ, R. B., PAWLOWSKI, R. P., AND SHADID, J. N. 2002. Computational bifurcation and stability studies of the 8:1 th ermal cavity problem. Internat. J. Numer. Meth. Fluids 40, 8, 1059-1073.
46. SHADID, J. N., MOFFAT, H. K., HUTCHINSON, S. A., HENNIGAN, G. L., DEVINE, K. D., AND SALINGER, A. G. 1995. MPSalsa: A finite element computer program for reacting flow problems, part 1 - theoretical development. Tech. rep. SAND95-2752. Sandia National Laboratories, Albuquerque, NM.
47. SILVESTER, D., ELMAN, H., KAY, D., AND WATHEN, A. 2001. Efficient preconditioning of the linearized Navier-Stokes equations for incompressible flow. J. Comp. Appl. Math. 128, 261-279.
48. SMITH, B. T., BOYLE, J. M., DONGARRA, J. J., GARBOW, B. S., IKEBE, Y., KLEMA, V. C., AND MOLER, C. B. 1976. Matrix Eigensystem Routines - EISPACK Guide, 2nd ed. Lecture Notes in Computer Science, vol. 6. Springer-Verlag, New York, NY.
49. SNIR, M., OTTO, S., HUSS-LEDERMAN, S., WALKER, D., AND DONGARRA, J. 1998. MPI - The Complete Reference, Volume 1, MPI core. MIT Press, Cambridge, MA.
50. STHOUSTHUP, B. 2000. The C++ Programming Language. Addison-Wesley, Reading, MA.
51. SUN MICROSYSTEMS. 2003. Java Native Interface. Go online to http://java.sun.com/products/jdk/1.2/docs/guide/jni.
52. THE MOZILLA ORGANIZATION. 2004a. Mozilla bonsai home page. Go online to http://www.mozilla.org/bonsai.html.
53. THE MOZILLA ORGANIZATION. 2004b. Mozilla Bugzilla home page. Go online to http://www.mozilla.org/projects/bugzilla.
54. THORNQUIST, H., LEHOUCQ, R., AND HETMANIUK, U. 2004. Anasazi home page. Go online to http:// software.sandia.gov/Trilinos/packages/anasazi.
55. TONG, C. AND TUMINARO, R. 2000. ML2.0 smoothed aggregation user's guide. Tech. rep. SAND2001-8028. Sandia National Laboratories, Albuquerque, NM.
56. TUMINARO, R. S., HEROUX, M. A., HUTCHINSON, S. A., AND SHADID, J. N. 1999. Official Aztec User's Guide, Version 2.1. Sandia National Laboratories, Albuquerque, NM.
57. TUMINARO, R. S. AND HU, J. 2004. Ml home page. Go online to http://www.cs.sandia.gov/~tuminaro/ML_Description.html.
58. VAN HEESCH, D. 2004. Doxygen home page. Go online to http://www.doxygen. org.
59. VANEK, P., BREZINA, M., AND MANDEL, J. 1998. Convergence of algebraic multigrid based on smoothed aggregation. Tech. rep. 126, UCD/CCM. University of Colorado at Denver, Denver, CO.
60. VANEK, P., MANDEL, J., AND BREZINA, M. 1996. Algebraic multigrid based on smoothed aggregation for second and fourth order problems. Comput. 56, 179-196.
61. VAUGHAN, G., ELLISTON, B., TROMEY, T., AND TAYLOR, I. 2000. Gnu Autoconf, Automake, and Libtool. New Riders, Berkeley, CA.
62. YEE, K. 1966. Numerical solution of initial boundary value problems involving Maxwell's equations in isotropic media. IEEE Trans. Antenn. Propag. 16, 302-307.
63. ZEPPER, J., ARAGON, K., ELLIS, M., BYLE, K., AND EATON, D. 2003. Sandia National Laboratories ASCI Applications Software Quality Engineering Practices, Version 2.0. Tech. rep., Sandia National Laboratories, Albuquerque, NM.