A simple method for the detection of measles virus genome by loop-mediated isothermal amplification (LAMP)

Journal of Medical Virology

Volumn 76, Issue 3, 2005, Pages 406-413

  Fujino, Motoko ^a   Yoshida, Naoko ^a   Yamaguchi, Shinya ^b   Hosaka, Norimitsu ^c   Ota, Yoshinori ^c   Notomi, Tsugunori ^c   Nakayama, Tetsuo ^a  

^a KITASATO UNIVERSITY   (Japan)

^b National Hospital Organization Kasumigaura Medical Center   (Japan)

^c EIKEN CHEMICAL CO LTD   (Japan)

Author keywords

Measles virus; Rapid diagnosis; Reverse transcription loop mediated isothermal amplification (RT LAMP); Reverse transcription polymerase reaction (RT PCR)

Indexed keywords

MEASLES VACCINE; VIRUS RNA;

ANIMAL CELL; ARTICLE; CLINICAL ARTICLE; CONTROLLED STUDY; DIAGNOSTIC PROCEDURE; EPIDEMIC; GENE AMPLIFICATION; GENOTYPE; HUMAN; HUMAN CELL; INTERMETHOD COMPARISON; JAPAN; LOOP MEDIATED ISOTHERMAL AMPLIFICATION; LYMPHOCYTE; MEASLES; MEASLES VIRUS; NASOPHARYNX; NONHUMAN; REVERSE TRANSCRIPTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; SENSITIVITY AND SPECIFICITY; SPECTROPHOTOMETRY; TREATMENT FAILURE; VIRUS DETECTION; VIRUS GENOME; VIRUS STRAIN; VIRUS TRANSMISSION;

BASE SEQUENCE; GENOME, VIRAL; HUMANS; LYMPHOCYTES; MEASLES; MEASLES VIRUS; MOLECULAR SEQUENCE DATA; NASOPHARYNX; NUCLEIC ACID AMPLIFICATION TECHNIQUES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SERUM;

EID: 20044387604     PISSN: 01466615     EISSN: None     Source Type: Journal    
DOI: 10.1002/jmv.20371     Document Type: Article

References (30)

1. Afzal MA, Osterhaus ADME, Cosby SL, Jin L, Beeler J, Takeuchi K, Kawashima H. 2003. Comparative evaluation of measles virus-specific RT-PCR methods through an international collaborative study. J Med Virol 70:171-176.
2. Griffin DE, Bellini WJ. 2001. Measles virus. In: Fields virology, 4th edn. Philadelphia: Lippincott Williams & Wilkins. pp 1401-1441.
3. Helfand RF, Kim DK, Gary HE, Jr., Edwards GL, Bisson GP, Papania MJ, Heath JL, Schaff DL, Bellini WJ, Redd SC, Anderson LJ. 1998. Nonclassic measles infections in an immune population exposed to measles during a college bus trip. J Med Virol 56:337-341.
4. Ihira M, Yoshikawa T, Enomoto Y, Akimoto S, Ohashi M, Suga S, Nishimura N, Ozaki T, Nishiyama Y, Notomi T, Ohta Y, Asano Y. 2004. Rapid diagnosis of human herpesvirus 6 infection by a novel DNA amplification method, loop-mediated isothermal amplification. J Clin Microbiol 42:140-145.
5. Iwamoto T, Sonobe T, Hayashi K. 2003. Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples. J Clin Microbiol 41:2616-2622.
6. Kobune F, Sakata H, Sugiura A. 1990. Marmoset lymphoblastoid cells as a sensitive host for isolation of measles virus. J Virol 64:700-705.
7. Kuboki N, Inoue N, Sakurai T, Di Cello F, Grab DJ, Suzuki H, Sugimoto C, Igarashi I. 2003. Loop-mediated isothermal amplification for detection of African trypanosomes. J Clin Microbiol 41:5517-5524.
8. Kumada A, Komase K, Nakayana T. 2004. Recombinant measles AIK-C strain expressing current wild-type hemagglutinin protein. Vaccine 22:309-316.
9. Lievano FA, Papania MJ, Helfand RF. 2004. Lack of evidence of measles virus shedding in people with inapparent measles virus infections J Infect Dis 189:8165-8170.
10. Maruyama F, Kenzaka T, Yamaguchi N, Tani K, Nasu M. 2003. Detection of bacteria carrying the stx2 gene by in situ loop-mediated isothermal amplification. Appl Environ Microbiol 69:5023-5028.
11. Mori Y, Kitao M, Tomita N, Notomi T. 2004. Real-time turbidimetry of LAMP reaction for quantifying template DNA. J Biochem Biophys Methods 59:145-157.
12. Mossong J, Nokes DJ, Edmunds WJ, Cox MJ, Ratnam S, Muller CP. 1999. Modeling the impact of inapparent measles transmission in vaccinated populations with waning immunity. Am J Epidemiol 150:1238-1249.
13. Nagamine K, Hase T, Notomi T. 2002. Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol Cell Probes 16:223-229.
14. Nakayama T, Mori T, Yamaguchi S, Sonoda S, Asamura S, Yamashita R, Takeuchi Y, Urano T. 1995. Detection of measles virus genome directly from clinical samples by reverse transcriptase-polymerase chain reaction and genetic variability. Virus Res 35:1-16.
15. Nakayama T, Zhou J, Fujino M. 2003. Current status of measles in Japan. J Infect Chemother 9:1-7.
16. Notomi T, Okayama H, Masubuchi H, Yonekawa T, K. Watanabe K, Amino N, Hase T. 2000. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res 28:e63.
17. Okafuji T, Yoshida N, Fujino M, Motegi Y, Ihara T, Ota Y, Notomi T, Nakayama T. 2005. Rapid diagnostic method for the detection of mumps virus genome by loop-mediated isothermal amplification. J Clin Microbiol 43:1625-1631.
18. Okamoto S, Yoshikawa T, Ihira M, Suzuki K, Shimokata K, Nishiyama Y, Asano Y. 2004. Rapid detection of varicella-zoster virus infection by a loop-mediated isothermal amplification method. J Med Virol 74:677-682.
19. Ozoemena LC, Minor PD, Afzahl MA. 2004. Comparative evaluation of measles virus specific TaqMan PCR and conventional PCR using synthetic and natural RNA templates. J Med Virol 73:79-84.
20. Parida M, Posadas G, Inoue S, Hasebe F, Morita K. 2004. Real-time reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus. J Clin Microbiol 42:257-263.
21. Schalk JAC, Van den Elzen C, Ovelgonne H, Baas C, Jongen PMJM. 2004. Estimation of the number of infectious measles viruses in live virus vaccine using real-time PCR. J Virol Methods 117:179-187.
22. Stein CE, Birmingham M, Kurian M, Duclos P, Strebel P. 2003. The global burden of measles in the year 2000 - a model that uses country-specific indicators. J Infect Dis 187:88-S14.
23. Takahashi M, Nakayama T, Kashiwagi Y, Takami T, Sonoda S, Yamanaka T, Ochiai H, Ihara T, Tajima T. 2000. A single genotype of measles virus is dominant whereas several genotypes of mumps virus are co-circulating. J Med Virol 62:278-285.
24. Thai HTC, Le MQ, Vuong CD, Parida M, Minekawa H, Notomi T, Hasebe F, Morita K. 2004. Development and evaluation of a novel loop-mediated isothermal amplification method for rapid detection of severe acute respiratory syndrome coronavirus. J Clin Microbiol 42:1956-1961.
25. WHO. 2001. Standardization of the nomenclature for describing the genetic characteristics of wild-type measles viruses. Wkly Epidemiol Rec 76:241-248.
26. WHO. 2002. WHO-UNICEF joint statement on strategies to reduce measles mortality worldwide. Wkly Epidemiol Rec 77:224-228.
27. Wild TF, Malvoisin E, Buckland R. 1991. Measles virus: Both haemagglutinin and the fusion glycoproteins are required for fusion. J Gen Virol 72:439-442.
28. Yamaguchi S. 1997. Identification of three lineages of wild measles virus by nucleotide sequence analysis of N, P, M, F and L genes in Japan. J Med Virol 152:113-120.
29. Yoshikawa T, Ihira M, Akimoto S, Usui C, Miyake F, Suga S, Enomoto Y, Suzuki Y, Nishiyama Y, Asano A. 2004. Detection of human herpesvirus 7 DNA by loop-mediated isothermal amplification. J Clin Microbiol 42:1348-1352.
30. Zhou J, Fujino M, Nakayama T. 2003. H1 genotype of measles virus was detected in outbreaks in Japan after 2000. J Med Virol 70:642-648.