A genetic linkage map of the soybean cyst nematode Heterodera glycines

Molecular Genetics and Genomics

Volumn 273, Issue 3, 2005, Pages 273-281

  Atibalentja, N ^a   Bekal, S ^a   Domier, L L ^a,b   Niblack, T L ^a   Noel, G R ^a,b   Lambert, K N ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

AFLP markers; Plant pathogen; Real time PCR; Whole genome amplification

Indexed keywords

ARTICLE; CONTROLLED STUDY; FINGER DERMATOGLYPHICS; GENE LOCUS; GENE MAPPING; GENETIC LINKAGE; GENOTYPE; HETERODERA GLYCINES; NEMATODE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SOYBEAN; VIRULENCE;

ANIMALS; CHROMOSOME MAPPING; GENETIC MARKERS; GENOTYPE; LINKAGE (GENETICS); NEMATODA; POLYMERASE CHAIN REACTION; SOYBEANS;

GLYCINE MAX; HETERODERA GLYCINES;

EID: 20044374019     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-005-1125-x     Document Type: Article

References (53)

1. Albertson DG, Thomson JN (1982) The kinetochores of Caenorhabditis elegans. Chromosoma 86:409-428
2. Albertson DG, Thomson JN (1993) Segregation of holocentric chromosomes at meiosis in the nematode, Caenorhabditis elegans. Chromosome Res 1:15-26
3. Alonso-Blanco C, Peeters AJM, Koomneef M, Lister C, Dean C, Van den Bosch N, Pot J, Kuiper MTR (1998) Development of an AFLP based linkage map of L er, Col and Cvi Arabidopsis thaliana ecotypes and construction of L er/Cvi recombinant inbred line population. Plant J 14:259-271
4. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (eds) (1992) Short protocols in molecular biology, 2nd edn. Wiley, New York
5. Barnes TM, Kohara Y, Coulson A, Hekimi S (1995) Meiotic recombination, noncoding DNA and genomic organization in Caenorhabditis elegans. Genetics 141:159-179
6. Bekal S, Niblack TL, Lambert KN (2003) A chorismate mutase from the soybean cyst nematode Heterodera glycines shows polymorphisms that correlate with virulence. Mol Plant Microbe Interact 16:439-446
7. Brenner S (1974) The genetics of Caenorhabditis elegans. Genetics 77:71-94
8. Burr B, Evola SV, Burr FA, Beckmann JS (1983) The application of restriction fragment length polymorphism to plant breeding. In: Setlow JK, Hollaender A (eds) Genetic engineering, vol 5. Plenum Press, New York, pp 45-59
9. Chakravarti A, Lasher LK, Reefer JE (1991) A maximum likelihood method for estimating genome length using genetic linkage data. Genetics 128:175-182
10. Concibido VC, Denny RL, Boutin SR, Hautea R, Orf JH, Young ND (1994) DNA marker analysis of loci underlying resistance to soybean cyst nematode (Heterodera glycines Ichinohe). Crop Sci 34:240-346
11. Concibido VC, Lange DA, Denny RL, Orf JH, Young ND (1997) Genome mapping of soybean cyst nematode resistance genes in 'Peking', PI90763, and PI88788 using DNA markers. Crop Sci 37:258-264
12. Dong K, Opperman CH (1997) Genetic analysis of parasitism in the soybean cyst nematode Heterodera glycines. Genetics 146:1311-1318
13. Edgley ML, Riddle DL (1993) The nematode Caenorhabditis elegans. In: O'Brien SJ (ed) Genetic maps: locus maps of complex genomes, 6th edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, pp 3.281-3.318
14. Endo BY (1992) Cellular responses to infection. In: Riggs RD, Wrather JA (eds) Biology and management of the soybean cyst nematode. APS Press, St. Paul, pp 37-49
15. Fishman L, Kelly AJ, Morgan E, Willis JH (2001) A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions. Genetics 159:1701-1716
16. Gao B, Allen R, Maier T, Davis EL, Baum TJ, Hussey RS (2001) Identification of putative parasitism genes expressed in the esophageal gland cells of the soybean cyst nematode Heterodera glycines. Mol Plant-Microbe Interact 14:1247-1254
17. Gao B, Allen R, Maier T, Davis EL, Baum TJ, Hussey RS (2003) The parasitome of the phytonematode Heterodera glycines. Mol Plant Microbe Interact 16:720-726
18. Goldstein P, Triantaphyllou AC (1980) The ultrastructure of sperm development in the plant-parasitic nematode Meloidogyne hapla. J Ultrastr Res 71:143-153
19. Habu Y, Fuka-Tanaka S, Hisatomi Y, Iida S (1997) Amplified restriction fragment length polymorphism mRNA fingerprinting using a single restriction enzyme that recognizes a 4-bp sequence. Biochem Biophys Res Comm 234:516-521
20. Hulbert SH, Ilott TW, Legg EJ, Lincoln SE, Lander ES, Michelmore RW (1988) Genetic analysis of the fungus, Bremia lactucae, using restriction fragment length polymorphisms. Genetics 120:947-958
21. Keim P, Schupp JM, Travis SE, Clayton K, Zhu T, Shi L, Ferreira A, Webb DM (1997) A high density genetic map of soybean based upon AFLP markers. Crop Sci 37:537-543
22. 2 matings. Theor Appl Genet 91:74-81
23. Koenning SR, Barker KR (1998) Survey of Heterodera glycines races and other plant-parasitic nematodes on soybean in North Carolina. Suppl J Nematol 30:569-576
24. Lambert KN, Bekal S, Domier LL, Niblack TL, Noel GR, Smyth C (2005) Selection of Heterodera glycines chorismate mutase-1 alleles on nematode-resistant soybean. Mol Plant Microbe Interact (in press)
25. Lange K, Boehnke M (1982) How many polymorphic genes will it take to span the human genome? Am J Hum Genet 34:842-845
26. Lapp NA, Triantaphyllou AC (1972) Relative DNA content and chromosomal relationships of some Meloidogyne, Heterodera, and Meloidodera spp. (Nematoda: Heteroderidae). J Nematol 4:287-291
27. Liu BH (1998) Statistical genomics: linkage, mapping, and QTL analysis. CRC Press, Boca Raton
28. Marra M et al (1999) A map for sequence analysis of the A1rabidopsis thaliana genome. Nat Genet 22:265-270
29. McCarter JP, Mitrevia M, Clifton SW, Bird DM, Waterston RH (2003) Nematode gene sequences: update for December 2003. J Nematol 35:465-469
30. McReynolds LA, DeSimone SM, Williams SA (1986) Cloning and comparison of repeated DNA sequences from the human filarial parasite Brugia malayi and the animal parasite Brugia pahangi. Proc Natl Acad Sci USA 83:797-801
31. Mudge J, Gregan PB, Kenworthy JP, Orf JH, Young ND (1997) Two microsatellite markers that flank the major soybean cyst nematode resistance locus. Crop Sci 37:1611-1615
32. Niblack TL, Tylka GL, Riggs RD (2004) Nematode pathogens of soybean. In: Boerma HR, Specht JE (eds) Soybeans: improvement, production, and uses, 3rd edn. American Society of Agronomy, Madison, pp 821-851
33. Opperman CH, Bird DM (1998) The soybean cyst nematode, Heterodera glycines: a genetic model system for the study of plant-parasitic nematodes. Curr Opin Plant Biol 1:342-346
34. Rouppe van der Voort JNAM, van Enckevort ELJG, Pijnacker LP, Helder J, Gommers FJ, Bakker J (1996) Chromosome number of the potato cyst nematode Globodera rostochiensis. Fundam Appl Nematol 19:369-374
35. Rouppe van der Voort JNAM, van Zandvoort P, van Eck HJ, Folkertsma RT, Hutten RB, Draaistra J, Gommers FJ, Jacobsen E, Helder J, Bakker J (1997) Use of allele specificity of comigrating AFLP markers to align genetic maps from different potato genotypes. Mol Gen Genet 255:438-447
36. Rouppe van der Voort JNAM, van Eck HJ, van Zandvoort PM, Overmars H, Helder J, Bakker J (1999) Linkage analysis by genotyping of sibling populations: a genetic map for the potato cyst nematode constructed using "pseudo-F2" mapping strategy. Mol Gen Genet 261:1021-1031
37. Saal B, Wricke G (2002) Clustering of amplified fragment length polymorphism markers in a linkage map of rye. Plant Breed 121:117-123
38. Shoemaker RC, Specht JE (1995) Integration of the soybean molecular and classical genetic linkage group. Crop Sci 35:436-446
39. Tanksley SD et al (1992) High density molecular linkage maps of the tomato and potato genomes. Genetics 132:1141-1160
40. Tanksley SD, Young ND, Paterson AH, Bonierbale MW (1989) RFLP mapping in plant breeding: new tools for an old science. Biotechnology 7:257-264
41. The C. elegans Sequencing Consortium (1998) Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282:2012-2018
42. Van Ooijen JW, Voorrips RE (2001) JoinMap 3.0, software for the calculation of genetic linkage maps. Plant Research International, Wageningen
43. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
44. Vuylsteke M, Mank R, Antonise R, Bastiaans E, Senior ML, Stuber CW, Melchinger AE, Lübberstedt T, Xia XC, Stam P, Zabeau M (1999) Two high-density AFLP linkage maps of Zea mays L.: analysis of distribution of AFLP markers. Theor Appl Genet 99:921-935
45. Wang X, Allen R, Ding X, Goellner M, Maier T, de Boer J, Baum TJ, Hussey RS, Davis EL (2001) Signal peptide-selection of cDNA cloned directly from esophageal gland cells of the soybean cyst nematode Heterodera glycines. Mol Plant Microbe Interact 14:536-544
46. Waterston RH et al (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420:520-562
47. Waugh R, McLean K, Flavell AJ, Pearce SR, Kumar A, Thomas BBT, Powel W (1997) Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphism (S-SAP). Mol Gen Genet 253:687-694
48. Webb DM, Baltazar BM, Rao-Arelli AP, Schupp J, Clayton K, Keim P, Beavis WD (1995) Genetic mapping of soybean cyst nematode race 3 resistance loci in the soybean PI437654. Theor Appl Genet 91:574-581
49. Weisemann JM, Mattews BF, Devine TE (1992) Molecular markers located proximal to the soybean cyst nematode resistance gene, Rhg4. Theor Appl Genet 85:136-138
50. Williams SA, Lizotte-Waniewski MR, Foster J, Guiliano D, Daub J, Scott AL, Slatko B, Blaxter ML (2000) The filarial genome project: analysis of the nuclear, mitochondrial and endosymbiont genomes of Brugia malayi. Int J Parasitol 30:411-419
51. Workneh F, Tylka GL, Yang XB, Faghihi J, Ferris JM (1999) Regional assessment of soybean brown stem rot, Phytophthora sojae, and Heterodera glycines using area-frame sampling: prevalence and effects of tillage. Phytopathology 89:204-211
52. Wrather JA, Anderson TR, Arsyad DM, Tan Y, Ploper LD, Porta-Puglia A, Ram HH, Yorinori JT (2001) Soybean disease loss estimates for the top ten soybean-producing countries in 1998. Can J Plant Pathol 23:115-121
53. Young LD (1992) Epiphytology and life cycle. In: Riggs RD, Wrather JA (eds) Biology and management of the soybean cyst nematode. APS Press, St. Paul, pp 27-36