Conservation genetics and Pacific fisheries bycatch: Mitochondrial differentiation and population assignment in black-footed albatrosses (Phoebastria nigripes)

Conservation Genetics

Volumn 6, Issue 2, 2005, Pages 289-295

  Walsh, H E ^a   Edwards, S V ^b  

^a UNIVERSITY OF WASHINGTON   (United States)

^b HARVARD UNIVERSITY   (United States)

Author keywords

Black footed albatross; Cytochrome b; Fisheries bycatch; Population assignment; Population genetic structure

Indexed keywords

BYCATCH; CONSERVATION GENETICS; SEABIRD;

OCEANIC REGIONS; PACIFIC OCEAN; WORLD;

CICONIIFORMES; DIOMEDEA NIGRIPES;

EID: 19944413087     PISSN: 15660621     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10592-004-7824-8     Document Type: Article

References (51)

1. JC Avise D Walker 1998 Pleistocene phylogeographic effects on avian populations and the speciation process Proc. R. Soc. Lon. B 265 457 463
2. MA Banks W Eichert 2000 WHICHRUN (version 3.2): A computer program for population assignment of individuals based on multilocus genotype data J. Hered. 91 87 89
3. P Beerli J Felsenstein 1999 Maximum likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach Genetics 152 763 773
4. P Beerli J Felsenstein 2001 Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach Proc. Natl Acad. Sci. USA 98 4563 4568
5. BirdLife International (2003) Phoebastria nigripes. In: 2003 IUCN Redlist of Threatened Species, www.redlist.org (ed. IUCN). The World Conservation Union, Gland, Switzerland
6. BW Bowen FA Abreu-Grobois GH Balazs N Kamezaki CJ Limpus RJ Ferl 1995 Trans-Pacific migrations of the loggerhead turtle (Caretta caretta) demonstrated with mitochondrial DNA markers PNAS 92 3731 3734
7. V Bretagnolle C Attié E Pasquet 1998 Cytochrome b evidence for validity and phylogenetic relationships of Pseudobulweria and Bulweria (Procellariidae) Auk 115 188 195
8. Brothers NP, Cooper J, Lokkeborg S (1999) The incidental catch of seabirds by longline fisheries: Worldwide review and technical guidelines for mitigation, 100 pp. FAO Fisheries Circular No. 937. Food and Agriculture Organization of the United Nations, Rome
9. TM Burg JP Croxall 2004 Global population structure and taxonomy of the wandering albatross species complex Mol. Ecol. 13 2345 2355
10. K Cousins J Cooper 2000 The Population Biology of the Black-Footed Albatross in Relation to Mortality Caused by Longline Fishing Western Pacific Regional Fishery Management Honolulu
11. KA Crandall AR Templeton 1993 Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction Genetics 134 959 969
12. MC Double R Gales T Reid N Brothers CL Abbott 2003 Morphometric comparison of Australian shy and New Zealand white-capped albatrosses Emu 103 287 294
13. SV Edwards P Beerli 2000 Perspective: Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies Evolution 54 1839 1854
14. SV Edwards MC Silva VL Friesen KI Warheit 2001 Molecular genetic markers in the analysis of seabird bycatch populations E. Melvin J Parrish Seabird Bycatch Trends Roadblocks and Solutions University of Alaska Sea Grant Anchorage 115 140
15. MDB Eldridge JM King AK Loupis PBS Spences AC Taylor LC Pope GP Hall 1999 Unprecedented low levels of genetic variation and inbreeding depression in an island population of the black-footed rock-wallaby Cons. Biol. 13 531 541
16. B Ewing P Green 1998 Basecalling of automated sequencer traces using phred. II. Error probabilities Genome Res. 8 186 194
17. B Ewing L Hillier M Wendl P Green 1998 Basecalling of automated sequencer traces using phred. I. Accuracy assessment Genome Res. 8 175 185
18. L Excoffier 2001 Analysis of population subdivision DJ Balding M Bishop C Cannings Handbook of Statistical Genetics John Wiley and Sons Chichester UK 271 307
19. L Excoffier PE Smouse JM Quattro 1992 Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data Genetics 131 479 491
20. HA Fisher 1976 Some dynamics of a breeding colony of Laysan albatrosses Wilson Bull. 88 121 142
21. R Frankham 1995 Effective population size/adult population size ratios in wildlife: A review Genet. Res. 66 95 107
22. YX Fu WH Li 1993 Statistical tests of neutrality of mutations Genetics 133 693 709
23. R Gales 1998 Albatross populations: status and threats G Robertson R Gales Albatross Biology and Conservation Surrey Beatty and Sons Chipping Norton 20 45
24. E Gilman H Freifeld 2003 Seabird mortality in North Pacific longline fisheries Endangered Species Update 20 35 46
25. Gordon D C Abajian P Green 1998 CONSED: A graphical tool for sequence finishing Genome Res. 8 195 202
26. J Goudet M Raymond T de Meeüs F Rousset 1996 Testing differentiation in diploid populations Genetics 144 1933 1940
27. Green P (1994) PHRAP. Unpublished, available for download at http://www.genome.washington.edu/UWGC/analysistools/phrap.htm
28. Ito J, Shaw W, Burgner RL (eds.) (1993) Symposium on biology, distribution and stock assessment of species caught in the high seas driftnet fisheries in the North Pacific Ocean. Int. N. Pac. Fish. Comm. Bulletin 53. Sydney, British Columbia
29. M Kimura 1980 A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences J. Mol. Evol. 16 111 120
30. JFC Kingman 1982 The coalescent Stochastic Processes Appl. 13 235 248
31. RL Lewison LB Crowder 2003 Estimating fishery bycatch and effects on a vulnerable seabird population Ecol. Appl. 13 743 753
32. E Mayr 1963 Animal Species and Evolution Harvard University Press Cambridge
33. M Nei WH Li 1979 Mathematical model for studying genetic variation in terms of restriction endonucleases Proc. Natl Acad. Sci. USA 76 5269 5273
34. GB Nunn SE Stanley 1998 Body size effects and rates of cytochrome b evolution in tube-nosed seabirds Mol. Biol. Evol. 15 1360 1371
35. GB Nunn J Cooper P Jouventin CJR Robertson GC Robertson 1996 Evolutionary relationships among extant albatrosses (Procellariiformes: Diomedeidae) established from complete cytochrome b gene sequences Auk 113 784 801
36. J Penhallurick M Wink 2004 Analysis of the taxonomy and nomenclature of the Procellariiformes based on complete nucleotide sequences of the mitochondrial cytochrome b gene Emu 104 125 147
37. M Raymond F Rousset 1995 An exact test for population differentiation Evolution 49 1280 1283
38. DW Rice KW Kenyon 1962 Breeding distribution, history and populations of North Pacific albatrosses Auk 79 365 386
39. J Rozas JC Sánchez-DelBarrio X Messeguer R Rozas 2003 DnaSP, DNA polymorphism analyses by the coalescent and other methods Bioinformatics 19 2496 2497
40. J Sambrook EF Fritsch T Maniatis 1989 Molecular Cloning: A Laboratory Manual 2 Cold Spring Harbor Laboratory Press New York
41. S Schneider D Roessli L Excoffier 2000 Arlequin ver. 2.000: A Software for Population Genetics Data Analysis Genetics and Biometry Laboratory University of Geneva, Switzerland
42. Stehn RA, Rivera KS, Fitzgerald S, Wohl KD (2001) Incidental catch of seabirds by longline fisheries in Alaska. In: Seabird Bycatch: Trends, Roadblocks, and Solutions (eds. Melvin E, Parrish J), pp. 61-77. University of Alaska Sea Grant, Anchorage
43. F Tajima 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism Genetics 123 585 595
44. USFWS (2004) News Release: Massive Albatross Nest Count Completed at Midway Atoll National Wildlife Refuge, pp. 1-2. Pacific Islands External Affairs Office, Honolulu
45. HE Walsh VL Friesen 2003 A comparison of intraspecific patterns of DNA sequence variation in mitochondrial DNA, α-enolase, and MHC class II B loci in auklets (Charadriiformes: Alcidae) J. Mol. Evol. 57 681 693
46. J Warham 1990 The Petrels: Their Ecology and Breeding Systems Academic Press San Diego, CA
47. SK Wasser AM Shedlock K Comstock EA Ostrander B Mutayoba M Stephens 2004 Assigning African elephant DNA to geographic region of origin: applications to the ivory trade Proc. Natl Acad. Sci. USA 101 14847 14852
48. GA Watterson HA Guess 1977 Is the most frequent allele the oldest? Theor Pop. Biol. 11 141 160
49. SM Waugh PA Prince H Weimerskirch 1999 Geographical variation in morphometry of black-browed and grey-headed albatrosses from four sites Polar Biol. 22 189 194
50. Whittow GC (1993) Black-footed Albatross (Diomedia nigripes). In: The Birds of North America, No. 65 (eds. Poole A, Gill F). The Birds of North America, Inc., Philadelphia
51. S Wright 1969 Evolution and the Genetics of Populations, Vol. 2, The Theory of Gene Frequencies University of Chicago Press Chicago