SDS-PAGE and numerical analysis of Candida albicans from human oral cavity and other anatomical sites

Brazilian Journal of Microbiology

Volumn 35, Issue 1-2, 2004, Pages 40-47

  Rodrigues, Cristina Crespo ^a   Höfling, José Francisco ^a,c   Gomes Boriollo, Marcelo Fabiano ^a   De Oliveira Rodrigues, Janaina Aparecida ^a   De Azevedo, Ricardo Antunes ^b   Gonçalves, Reginaldo Bruno ^a   Gomes, Luiz Humberto ^b   Almeida Tavares, Flávio César ^b  

^a UNIVERSITY OF CAMPINAS   (Brazil)

^b SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

^c NONE   (Brazil)

Author keywords

C. Albicans; Human anatomical sites; Numerical analyzes; SDS PAGE

Indexed keywords

CANDIDA ALBICANS;

EID: 19944397869     PISSN: 15178382     EISSN: None     Source Type: Journal    
DOI: 10.1590/S1517-83822004000100006     Document Type: Article

References (61)

1. Alfenas, A.C. Eletroforese de isoenzimas e proteínas afins; fundamentos e aplicações em plantas e microrganismos. Viçosa, Editora UFV, 1998. p.574.
2. Ames, G.F.L. Resolution of bacterial proteins by polyacrylamide gel electrophoresis on slabs. J. Biol. Chem., 249: 634-644, 1974.
3. Antonsson, B.; Montessuit, S.; Friedli, L.; Payton, M.A.; Paravicini, G. Protein kinase C in yeast. Characteristics of the Saccharomyces cerevisiae PKC1 gene product. J. Biol. Chem., 269: 16821-16828, 1994.
4. Arnavielhe, S.; Blancard, A.; Mallié, M.; Gouin, F.; Ottomani, A.; Manelli, J.C.; Bastide, J.M. Suivi mycologique d'infections à Candida albicans dans divers services hospitaliers. Typage molécularie des souches isolées et enquête épidémiologique. Path. Biol., 44: 447-451, 1996.
5. Asakura, K.; Iwaguchi, S.; Homma, M.: Sukai, T.: Higashide, K.; Tanaka, K. Electrophoretic karyotypes of clinically isolated yeasts of Candida albicans and C. glabrata. J. Gen. Microbiol., 137: 2531-2538, 1991.
6. Bradford, M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Analyt. Biochem., 72: 248-254, 1976.
7. Brawner, D.L.; Anderson, G.L.; Yuen, K.Y. Serotype prevalence of Candida albicans from blood culture isolates. J. Clin. Microbiol., 30: 149-153, 1992.
8. Bruneau, S.; Guinet, R. Rapid identification of medically important yeasts by electrophoretic protein patterns. FEMS Microbiol. Lett., 49: 329-333, 1989.
9. Casanova, M.; Chaffin, D.W.L. Cell wall glycoproteins of Candida albicans as released by different methods. J. Gen. Microbiol., 137: 1045-1051, 1991.
10. Cato, E.P.; Hash, D.E.; Holdman, L.V.; Moore, W.E.C. Electrophoretic study of Clostridium species. J. Clin. Microbiol., 15: 688-702, 1982.
11. Caugant, D.A.; Sandven, P. Epidemiological analysis of Candida albicans strains by multilocus enzyme electrophoresis. J. Clin. Microbiol., 31: 215-220, 1993.
12. Chibana, H.; Iwaguchi, S.I.; Homma, M.; Chindamporn, A.; Nakagawa, Y.; Tanaka, K. Diversity of tandemly repetitive sequences due to short periodic repetitions in the chromosomes of Candida albicans. J. Bacteriol., 176: 3851-3858, 1994.
13. Costas, M.; Holmes, B.; Wood, A.C.; On, S.L.W. Numerical analysis of electrophoretic protein patterns of Providencia rettgeri strains from human faeces, urine and other specimens. J. Appl. Bact., 67: 441-452, 1989a.
14. Costas, M.; Sloss, L.L.; Owen, R.J.; Gaston, M.A. Evaluation of numerical analysis of SDS-PAGE of protein patterns for typing Enterobacter cloacae. Epidem. Infect., 103: 265-274, 1989b.
15. Diaz-Guerra, T.M.; Martinez-Suarez, J.V.; Laguna, F.; Rodrigues-Tudela, J.L. Comparison of four molecular typing methods for evaluating genetic diversity among Candida albicans isolates from human immunodeficiency virus-positive patients with oral candidiasis. J. Clin. Microbiol., 35: 856-861, 1997.
16. Eze, J.M.O.; Dumbroff, E.B. A comparison of the Bradford and Lowry methods for the analysis of protein in chlorophyllous tissue. Can. J. Bot., 60: 1046-1049, 1982.
17. Farris, J.S. On the cophenetic correlation coefficient. Systematic Zool., 18: 279-285, 1969a.
18. Fox, B.C.; Mobley, H.L.T.; Wade, J.C. The use of a DNA probe for epidemiological studies of candidiasis in immunocompromised hosts. J. Infec. Dis., 159: 488-494, 1989.
19. Hall, R. Symposium on the use of electrophoresis in the taxonomy of algae and fungi. Electrophoretic protein profiles as criteria in the taxonomy of fungi and algae. Bull Torrey Bot. Club, 100: 253-259, 1973.
20. Hellstein, J.; Vawter-Hugart, H.; Fotos, P.; Schmid, J.; Soll, D.R. Genetic similarity and phenotypic diversity of commensal and pathogenic strains of Candida albicans isolated from the oral cavity. J. Clin. Microbiol., 31: 3190-3199, 1993.
21. Höfling, J.F.; Rosa, E.A.R.; Pereira, C.V.; Boriollo, M.F.G.; Rodrigues, J.A.O. Differentiation and numerical analysis of oral yeasts based on SDS-PAGE profiles. Influence of the culture media on the whole-cell protein extracts. Braz. J. Biol., 61: 507-516, 2001.
22. Holmes, B.; Costas, M.; Sloss, L.L. Numerical analysis of SDS-PAGE protein patterns of Serratia marcescens: a comparison with other typing methods. Epidem. Infect., 105: 107-117, 1990.
23. Izard, D.; Ferragut, C.; Gavini, F.; Kersters, K.; De Ley, J.; Leclerc, G. Klebsiella terrigena, a new species from soil and water. Int. J. Syst. Bacteriol., 31: 116-127, 1981.
24. Kaaren, G.V.; Joly, S. Carriage frequence, intensity of carriage, and strains of oral yeast species vary in the pogression to oral candidiasis in guman immunodeficiency virus-positive individuals. J. Clin. Microbiol., 40: 341-350, 2002.
25. Kersters, K. Numerical methods in the classification of bacteria by protein electrophoresis. In: Goodfellow, M.; Jones, D.; Priesr, F.G. Computer-assisted bacterial systematics. London, Academic Press, 1985. p.337-368.
26. Kersters, K.; De Ley, J. Identification and grouping of bacteria by numerical analysis of their electrophoretic protein patterns. J. Gen. Microbiol., 87: 333-342, 1975.
27. Laemmli, U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature, 227: 680-685, 1970.
28. Lehmann, P.F.; Kemker, B.J.; Hsiao, C.B.; Dev, S. Isoenzyme biotypes of Candida species. J. Clin. Microbiol., 27: 2514-2521, 1989b.
29. Lockhart, S.R.; Reed, B.D.; Pearson, D.L.; Soll, D.R. Most frequent scenario for recurrent candida vaginitis is strain maintenance with "substrain shuffling": demonstration by sequential DNA fingerprinting with probes Ca3, C1 and CARE2. J. Clin. Microbiol., 34: 767-777, 1996.
30. Maiden, M.F.J.; Tanner, A. Identification of oral yeasts by polyacrylamide gel electrophoresis. Oral Microbiol. Immunol., 6: 187-190, 1991.
31. Marco, F.; Lockhart, S.R.; Pfaller, M.A.; Pujol, C.; Rangel-Frausto, M.S.; Wiblin, T.; Blumberg, H.M.; Edwards, J.E.; Jarvis, W.; Siman, L.; Patterson, J.E.; Rinaldi, M.G.; Wenzel, R.P.; The NEMIS study group; Soll, D.R. Elucidating the origins of nosocomial infections with Candida albicans by DNA fingerprinting with the complex probe Ca3. J. Clin. Microbiol., 37: 2817-28-28, 1999.
32. Mata, A.L.; Rosa, R.T.; Rosa, E.A.R.; Golçalves, R.B.; Höfling, J.F. Clonal variability among oral Candida albicans assessed by allozyme electrophoresis analysis. Oral Microbiol. Immunol., 15: 350-354, 2000.
33. Mehta, S.K.; Stevens, D.A.; Mishra, S.K.; Feroze, F.; Pierson, D.L. Distribution of Candida albicans genotypes among family members. Diagn. Microbiol. Infec. Dis., 34: 19-25, 1999.
34. Monod, M.; Porchet, S.; Baudraz-Rosselet, F.; Frenk, E. The identification of pathogenic yeast strains by electrophoretic analysis of their chromosomes. J. Med. Microbiol., 32: 123-129, 1990.
35. Nébavi, F.; Arnavielhe, S.; Le Guennec, R.; Ménan, E.; Kacou, A.; Combe, P.; Aoussi, E.; Mallié, M.; Koné, M.; Bastide, J.M. Oropharyngeal candidiasis in AIDS patients from Abidjan (Ivory Coast): antifungal susceptivilities and multilocus enzyme electrophoresis analysis of Candida albicans isolates. Path. Biol., 46: 307-314, 1998.
36. Odds, F.C. Candida and Candidosis. Baltimore: Leisester Univ. Pr., 1979. p.352.
37. Owen, R.J.; Jackman, P.J.H. The similarities between Pseudomonas paucimobilis and allied bacteria derived from analysis of deoxyribonucleic acids and electrophoretic protein patterns. J. Gen. Microbiol., 128: 2945-2954, 1982.
38. Powderly, W.G.; Robinson, K.; Keath, E.J. Molecular typing of Candida albicans isolated from oral lesions of HIV-infected individuals. AIDS, 6: 81-84, 1992.
39. Pujol C.; Joly, S.; Lockhart, S.R.; Noel, S.; Tibayrenc, M.; Soll, D.R. Parity among the randomly amplified polymorphic DNA method, multilocus enzyme electrophoresis, and Southern blot hybridization with the moderately repetitive DNA probe Ca3 for fingerprinting Candida albicans. J. Clin. Microbiol., 35: 2348-2358, 1997.
40. Reynes, J.; Pujol, C.; Moreau, C.; Mallie, M.; Renaud, F.; Janbon, F.; Bastide, J.M. Simultaneous carriage of Candida albicans strains from HIV-infected patients with oral candidiasis: multilocus enzyme electrophoresis analysis. FEMS Microbiol. Lett., 137: 269-273, 1996.
41. Rosa, E.A.R.; Rosa, R.T.; Pereira, C.V.; Boriollo, M.F.G.; Höfling, J.F. Analysis of parity between protein-based electrophoretic methods for the characterization of oral Candida species. Mem. Inst. Oswaldo Cruz, 95: 801-806, 2000.
42. Rustchenko, E.P.; Howard, D.H.; Sherman, F. Chromosomal alterations of Candida albicans are associated with the gain and loss of assimilating functions. J. Bacteriol., 176: 3231-3241, 1994.
43. Rustchenko-Bulgac, E.P.; Sherman, F.; Hicks, J.B. Chromosomal rearrangements associated with morphological mutants provide a means for genetic variation of Candida albicans. J. Bacteriol., 172: 1276-1283, 1990.
44. Sadhu, C.; McEachern, M.J.; Rustchenko-Bulgac, E.P.; Schmid, J.; Soll, D.R.; Hicks, J.B. Telomeric and dispersed repeat sequences in Candida yeasts and their use in strain identification. J. Bacteriol., 173: 842-850, 1991.
45. Scherer, S.; Stevens, D.A. Application of DNA typing methods to epidemiology and taxonomy of Candida species. J. Clin. Microbiol., 25: 675-679, 1987.
46. Schmid J.; Herd, S.; Hunter, P.R.; Cannon, R.D.; Yasin, M.S.; Samad, S.; Carr, M.; Parr, D.; Mckinney, W.; Schousboe, M.; Harris, B.; Ikram, R.; Harris, M.; Restrepo, A.; Hoyos, G.; Singh, K.P. Evidence for a general-purpose genotype in Candida albicans, highly prevalent in multiple geographical regions, patient types and types of infection. Microbiology, 145: 2405-2413, 1999.
47. Schmid, J.; Voss, E.; Soll, D.R. Computer-assisted methods for assessing strain relatedness in Candida albicans by fingerprinting with the moderately repetitive sequence Ca3. J. Clin. Microbiol., 29: 1236-1243, 1990.
48. Schroppel, K.; Rotman, M.; Galask, R.; Mac, K.; Soll, D.R. Evolution and replacement of Candida albicans strains during recurrent vaginitis demonstrated by DNA fingerprinting. J. Clin. Microbiol., 32: 2646-2654, 1994.
49. Shechter, Y. Symposium on the use of electrophoresis in the taxonomy of algae and fungi. IV. Electrophoresis and taxonomy of medically important fungi. Bull Torrey Bot. Club, 100: 277-287, 1973.
50. Shen, H.D.; Choo, K.B.; Tsai, W.C.; Jen, T.M.; Yeh, J.Y.; Han, S.H. Differential identification of Candida species and other yeasts by analysis of [35S] methionine-labeled polypeptide profiles. Analyt. Biochem., 175: 548-551, 1988.
51. Sneath, P.H.; Johnson, R. The influence on numerical taxonomic similarities of errors in microbiological tests. J. Gen. Microbiol., 72: 377-392, 1972.
52. Sneath, P.H.A.; Sokal, R.Q. Numerical taxonomy. San Francisco, Freeman, 1973.
53. Soll, D.R.; Galask, R.; Schmid, J.; Hanna, C.; Mac, K.; Morrow, B. Genetic dissimilarity of commensal strains of Candida spp. carried in different anatomical locations of the same healthy women. J. Clin. Microbiol., 29: 1702-1710, 1991.
54. Stevens, D.A.; Odds, F.C.; Scherer, S. Application of DNA typing methods to Candida albicans epidemiology and correlations with phenotype. Rev. Infect. Dis., 12: 258-266, 1990.
55. Studier, F.W. Analysis of bacteriophage T7 early RNAs and proteins on slabs gels. J. Molec. Biol., 79: 237-248, 1973.
56. Tanner, A.C.R.; Listgarten, M.A.; Ebersole, J.L.; Strzempko, M.N. Bacteroides forsythus sp. nov., a slow growing, fusiform Bacteroides sp. from the human oral cavity. Int. J. Syst. Bacteriol., 36: 213-221, 1986.
57. Vancanneyt, M.; Lerberge, E.V.; Berny, J.F.; Hennebert, G.L.; Kersters, K. The application of whole-cell protein electrophoresis for the classification and identification of basidiomycetous yeast species. Antonie van Leeuwenhoek., 61: 69-78, 1992.
58. Vancanneyt, M.; Pot, B.; Hennebert, G; Kersters, K. Differentiation of yeast species based on electrophoretic whole-cell protein patterns. Syst. Appl. Microbiol., 14: 23-32, 1991.
59. Waters, M.G.; Blobel, G. Secretory protein translocation in a yeast cell-free system can occur posttranslationally and requires ATP hydrolysis. J. Cell Biol., 102: 1543-1550, 1986.
60. Woontner, M.; Jaehning, J.A. Accurate initiation by RNA polimerase II in a whole cell extract from Saccharomyces cerevisiae. J. Biol. Chem., 265: 8979-8982, 1990.
61. Xu, J.; Wilgalys, R.; Mitchell, T.G. Lack of genetic differentiation between two geographically diverse samples of Candida albicans isolated from patients infected with human immunodeficiency virus. J. Bacteriol., 181: 1369-1373, 1999.