Protein structure topological comparison, discovery and matching service

Bioinformatics

Volumn 21, Issue 10, 2005, Pages 2537-2538

  Torrance, G M ^a   Gilbert, D R ^a   Michalopoulos, I ^b   Westhead, D W ^b  

^a UNIVERSITY OF GLASGOW   (United Kingdom)

^b UNIVERSITY OF LEEDS   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER GRAPHICS; COMPUTER PROGRAM; INFORMATION SYSTEM; ONLINE SYSTEM; PRIORITY JOURNAL; PROTEIN LOCALIZATION; PROTEIN MOTIF; PROTEIN STRUCTURE;

EID: 19544395050     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti331     Document Type: Article

References (10)

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2. Gilbert,D. et al. (2001) A computer system to perform structure comparison using TOPS representations of protein structure. Comput. Chem., 26, 23-30.
3. Johannissen,L.O. and Taylor,W.R. (2003) Protein fold comparison by the alignment of topological strings. Protein Eng., 12, 949-955.
4. Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
5. Koch,I. et al. (1992) Analysis of protein sheet topologies by graph theoretical methods. Proteins, 12, 314-323.
6. Michalopoulos,I. et al. (2004) TOPS: an enhanced database of protein structural topology. Nucleic Acid Res., 32, D251-D254.
7. Ren,T. et al. (2004). MSAT: a multiple sequence alignment tool based on TOPS. Appl. Bioinformatics, 3(2-3), 149-158
8. Viksna,J. and Gilbert,D. (2001) Pattern matching and pattern discovery algorithms for protein topologies. In Algorithms in Bioinformatics: First International Workshop, WABI 2001 Proceedings, Vol. 2149, Lecture Notes in Computer Science. pp. 98-111. ISBN 3-540-42516-0.
9. Westhead,D. et al. (1999) Protein structural topology: automated analysis, diagrammatic representation and database searching. Protein Sci., 8, 897-904.
10. Williams,A. et al. (2003) Multiple structural alignment for distantly related all β structures using TOPS pattern discovery and simulated annealing Protein Eng., 16, 913-23.