Genetic variation of Japanese loach inferred from restriction fragment length polymorphism analysis of mitochondrial DNA

African Journal of Biotechnology

Volumn 4, Issue 4, 2005, Pages 318-325

  Khan, Md Mukhlesur Rahman ^a,b   Arai, Katsutoshi ^a,c   Kuroda, Kenji ^a   Umino, Tetsuya ^a   Nakagawa, Heisuke ^a  

^a HIROSHIMA UNIVERSITY   (Japan)

^b BANGLADESH AGRICULTURAL UNIVERSITY   (Bangladesh)

^c HOKKAIDO UNIVERSITY   (Japan)

Author keywords

D loop; Misgurnus anguillicaudatus; mtDNA; RFLP

Indexed keywords

CYTOCHROME B; MITOCHONDRIAL DNA; RESTRICTION ENDONUCLEASE; RNA;

ARTICLE; CLUSTER ANALYSIS; GENE CLUSTER; GENETIC ANALYSIS; GENETIC DIFFERENCE; GENETIC VARIABILITY; HAPLOTYPE; NONHUMAN; PHYLOGENETIC TREE; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

HYMENOPHYSA CURTA; MISGURNUS ANGUILLICAUDATUS; UEDA;

EID: 19544381700     PISSN: 16845315     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (28)

1. Asahida T, Saitoh K, Yamashita Y, Aonuma Y, Kobayashi T (1998). Genetic variation in the Japanese Flounder based on analysis of mitochondrial DNA by restriction endonucleases. Nippon Suisan Gakkaishi. 62(3):377-383.
2. Asahida T, Kobayashi T, Saitoh K, Nakayama I (1996). Tissue preservation and total DNA extraction from fish stored at ambient temperature using buffers containing high concentration of urea. Fisheries Sci. 62:727-730.
3. Avise JC, Arnold J, Ball RM, Bermingham E, Lamb T, Neigel JE, Reeb CA, Saunders NC (1987). Intranspecific phylogcography: The mitochondrial DNA bridge between population genetics and systematics. Annu. Rev. Ecol. Syst. 18:489-522.
4. Avise JC (1994). Molecular Markers, Natural History and Evolution. New York, Chapman and Hall. p. 511.
5. Avise JC, Lansman RA (1983). Polymorphism of mitochondrial DNA in populations of higher animals. In: Nei M, Koehn R (eds) Evolution of genes and proteins. Sinauer, Sunderland Publishers MA. pp.147-164.
6. Brown WM, George M Jr, Wilson WC (1997). Rapid evolution of animal mitochondrial DNA. Proc. Natl. Acad. Sci. USA. 76:1967-1971.
7. Dong S,Taniguchi N, Ishida R (1999). Two types of the loach Misgurnus anguillicaudatus collected from torentsu river. Jpn. J. Ichthyol. 46:83-90. (in Japanese, with English abstract).
8. Excoffier L, Smouse P, Quattro J (1992). Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics, 131:479-491.
9. Hanzawa N, Yonekawa H, Numachi K-I (1987). Variability of mitochondrial DNA in Japanese dace, Tribolodon hakonensis (Cyprinidae). Jpn. J. Genet. 62:27-38.
10. Kimura M (1978). Protein polymorphism and geographic variation in the loach Misgurnus anguillicaudatus. Anim. Blood Grps Biochem. Genet. 9:13-20.
11. Khan MMR, Arai K (2000). Allozyme variation and population divergence in the loach Misgurnus anguillicaudatus. Fisheries Sci. 66(2):211-222.
12. Kimura M (1980). A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
13. Maniatis T, Fritsch EF, Sambrook J (1989). Molecular cloning-A laboratory manual (2nd edition). Cold Spring Harbor, New York, USA.
14. Martin AP, Humphreys R, Palumbi SR (1992). Population genetic structure of the armorhead, Pseudpentaceros wheeleri, in the North Pacific Ocean: Application of the polymerase chain reaction to fisheries problems. Can. J. Fish. Aquat. Sci. 49:2386-2391.
15. McElroy D, Moran P, Bermingham E, Kornfield I (1991). REAP: the restriction enzyme analysis package, Version 4.0. Department of Zoology,Migratory Fish Res.Inst. Center for Marine Studies, University of Maine, Orono, USA.
16. Nei M (1987). Molecular evolutionary genetics. Columbia Univ. Press, New York.
17. Nei M, Tajima F (1981). DNA polymorphism detectable by restriction endonucleases. Genetics. 97:145-163.
18. Okazaki T, Jeon S-R, Watanabe M, Kitagawa T (1999). Genetic relationships of Japanese and Korean bagrid catfishes inferred from mitochondrial DNA analysis. Zool. Sci. 16:363-373.
19. 2 and the problem of small samples. Mol. Biol. Evol. 6(5):539-545.
20. Saitou N, Nei M (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
21. Schneider S, Kueffer JM, Roessli D, Excoffier L (1997). Arlequin Ver. 1.1: A Software for Population Genetic Data Analysis. Genetic and Biometry Laboratory, University of Geneva, Switzerland.
22. Sneath PH, Sokal RR (1973). Numarical Taxonomy. Freeman, San Francisco.
23. Suzuki KT, Kobayashi T, Matsuishi T, Numachi K (2000). Genetic variability of Japanese longfin smelt by restriction fragment length polymorphism analysis of mitochondrial DNA. Nippon Suisan Gakkaishi 66(2):269-274.
24. Tabata K, Nagayama H (1999). Successive changes of genetic constitution in red sea bream seedlings raised artificially for release. Fish Gent. Breed. Sci. 28:75-84.
25. Tabata K, Taniguchi N (2000). Differences between Pagrus major and Pagrus auratus through manily mtDNA control region analysis. Fisheries Sci. 66:9-18.
26. Wilson AC, Cann RL, Carr S, George M Jun, Gyllensten UB, Helm-Bychowski KM, Higuchi RG, Palumbi SR, Prager EM, Sage RD, Stoneking M (1985). Mitochondrial DNA and two perspectives on evolutionary genetics. Biol. J. Linn. Soc. 26:376-400.
27. Zhang Q, Arai K (1996). Flow cytometry for DNA contents of somatic cells and spermatoza in the progeny of natural tetraploid loach. Fisheries Sci. 62(6):870-877.
28. 2 values using pseudo-probability tests. J. Hered. 82(2):152-157.