Nucleotide Variability at the Acetyl Coenzyme A Carboxylase Gene and the Signature of Herbicide Selection in the Grass Weed Alopecurus myosuroides (Huds.)

Molecular Biology and Evolution

Volumn 21, Issue 5, 2004, Pages 884-892

  Délye, Christophe ^a   Straub, Cécile ^a   Michel, Séverine ^a   Le Corre, Valérie ^a  

^a CEMAGREF   (France)

Author keywords

Acetyl coenzyme A carboxylase; Alopecurus myosuroides; Herbicide; Local selection; Population structure

Indexed keywords

ACETYL COENZYME A CARBOXYLASE; HERBICIDE;

ALOPECURUS MYOSUROIDES; ARTICLE; ENZYME INHIBITION; GENE MUTATION; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GRASS; HAPLOTYPE; HERBICIDE RESISTANCE; NATURAL SELECTION; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; NUCLEOTIDE SEQUENCE; PLANT METABOLISM; POPULATION STRUCTURE;

ACETYL-COA CARBOXYLASE; ALLELES; BASE SEQUENCE; DNA; GENES, PLANT; HAPLOTYPES; LINKAGE DISEQUILIBRIUM; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; POACEAE; POLYMORPHISM, GENETIC; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ANALYSIS, DNA; SOFTWARE; STATISTICS; VARIATION (GENETICS);

ALOPECURUS; ALOPECURUS MYOSUROIDES; EMBRYOPHYTA;

EID: 1942533475     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msh095     Document Type: Article

References (39)

1. Bamshad, M., and S. P. Wooding. 2003. Signatures of natural selection in the human genome. Nat. Rev. Genet. 4:99-111.
2. Bergelson, J., M. Kreitman, E. A. Stahl, and D. Tian. 2001. Evolutionary dynamics of plant R-genes. Science 292:2281-2285.
3. Berger, S., T. Mitchell-Olds, and H. U. Stotz. 2002. Local and differential control of vegetative storage protein expression in response to herbivore damage in Arabidopsis thaliana. Physiol. Plant. 114:85-91.
4. Chauvel, B., and J. Gasquez. 1994. Relationships between genetic polymorphism and herbicide resistance whithin Alopecurus myosuroides Huds. Heredity 72:336-344.
5. Christoffers, M. J., M. L. Berg, and C. G. Messersmith. 2002. An isoleucine to leucine mutation in acetyl-CoA carboxylase confers herbicide resistance in wild oat. Genome 45:1049-1056.
6. Corpet, F. 1988. Multiple sequence alignment with hierarchical clustering. Nucl. Acids Res. 16:10881-10890.
7. Daborn, P. J., J. L. Yen, M. R. Bogwitz et al. (13 co-authors). 2002. A single P450 allele associated with insecticide resistance in Drosophila. Science 297:2253-2256.
8. Délye, C., É. Calmès, and A. Matéjicek. 2002. SNP markers for black-grass (Alopecurus myosuroides Huds.) genotypes resistant to acetyl CoA-carboxylase inhibiting herbicides. Theor. Appl. Genet. 104:1114-1120.
9. Délye, C., T. Wang, and H. Darmency. 2002. An isoleucine-leucine substitution in chloroplastic acetyl-Co A carboxylase from green foxtail (Setaria viridis L. Beauv.) is responsible for resistance to the cyclohexanedione herbicide sethoxydim. Planta 214:421-427.
10. Délye, C., X.-Q. Zhang, C. Chalopin, S. Michel, and S. B. Powles. 2003. An isoleucine residue within the carboxyl-transferase domain of multidomain acetyl-CoA carboxylase is a major determinant of sensitivity to aryloxyphenoxypropionate, but not to cyclohexanedione inhibitors. Plant Physiol. 132:1717-1724.
11. Dvornyk, V., A. Sirviö, M. Mikkonen, and O. Savolainen. 2002. Low nucleotide diversity at the pa1 locus in the widely distributed Pinus sylvestris. Mol. Biol. Evol. 19:179-188.
12. Fay, J. C., and C.-I. Wu. 2000. Hitchhiking under positive darwinian selection. Genetics 155:1405-1413.
13. Filatov D. A., and D. Charlesworth. 1999. DNA polymorphism, haplotype structure and balancing selection in the Laeven-worthia PgiC locus. Genetics 153:1423-1434.
14. Foster, D. K., P. Ward, and R. T. Hewson. 1993. Selective grassweed control in wheat and barley based on the safener fenchlorazole-ethyl. Pp. 1267-1272 in British Crop Protection Council, ed. Proceedings of the Brighton crop protection conference - weeds. British Crop Protection Council, Surrey, England.
15. García-Gil, M. R., M. Mikkonen, and O. Savolainen. 2003. Nucleotide diversity at two phytochrome loci along a latitudinal cline in Pinus sylvestris. Mol. Ecol. 12:1195-1206.
16. Gilad, Y., S. Rosenberg, M. Przeworski, D. Lancet, and K. Skorecki. 2002. Evidence for positive selection and population structure at the human MAO-A gene. Proc Natl Acad Sci USA 99:862-867.
17. Gornicki, P., J. Podkowinski, L. A. Scappino, J. DiMaio, E. Ward, and R. Haselkorn. 1994. Wheat acetylcoenzyme A carboxylase: cDNA and protein structure. Proc Natl Acad Sci USA 91:6860-6864.
18. Gronwald, J. W. 1991. Lipid biosynthesis inhibitors. Weed Sci. 39:435-449.
19. Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41:95-98.
20. Harwood, J. L. 1988. Fatty acid metabolism. Annu. Rev. Plant Physiol. 39:101-138.
21. Hudson, R. R. 2000. A new statistic for detecting genetic differentiation. Genetics 155:2011-2014.
22. Järvinen, P., J. Lemmetyinen, O. Savolainen, and T. Sopanen. 2003. DNA sequence variation in BpMADS2 gene in two populations of Betula pendula. Mol. Ecol. 12:369-384.
23. Jasieniuk, M., A. L. Brûlé-Babel, and I. N. Morrison. 1996. The evolution and genetics of herbicide resistance in weeds. Weed Sci. 44:176-193.
24. Kuittinen, H., D. Salguero, and M. Aguadé. 2002. Parallel patterns of sequence variation within and between populations at three loci of Arabidopsis thaliana. Mol. Biol. Evol. 19: 2030-2034.
25. Konishi, T., K. Shinohara, K. Yamada, and Y. Sasaki. 1996. Acetyl-CoA carboxylase in higher plants: most plants other than gramineae have both the prokaryotic and the eukaryotic forms of this enzyme. Plant Cell Physiol. 37:117-122.
26. Le Corre, V., F. Roux, and X. Reboud. 2002. DNA polymorphism at the FRIGIDA gene in Arabidopsis thaliana: extensive nonsynonymous variation is consistent with local selection for flowering time. Mol. Biol. Evol. 19:1261-1271.
27. Nei, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York.
28. Nei, M., and S. Kumar. 2000. Molecular evolution and phylogenetics. Oxford University Press, New York.
29. Podkowinski, J., G. E. Sroga, R. Haselkorn, and P. Gornicki. 1996. Structure of a gene encoding a cytosolic acetyl-CoA carboxylase of hexaploid wheat. Proc. Natl. Acad. Sci. USA 93:1870-1874.
30. Raymond, M., C. Chevillon, T. Guillemaud, T. Lenormand, and N. Pasteur. 1998. An overview of the evolution of over-produced esterases in the mosquito Culex pipiens. Phil. Trans. R. Soc. Lond. B Biol. Sci. 353:1707-1711.
31. Rozas, J., and R. Rozas. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175.
32. Savolainen, O., C. H. Langley, B. P. Lazzaro, and H. Freville. 2000. Contrasting patterns of nucleotide polymorphism at the alcohol dehydrogenase locus in the outcrossing Arabidopsis lyrata and the selfing Arabidopsis thaliana. Mol. Biol. Evol. 17:645-655.
33. Tajima, F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
34. Weiller, G. F. 1998. Phylogenetic profiles: a graphical method for detecting genetic recombination in homologous sequences. Mol. Biol. Evol. 15:326-335.
35. Wootton, J. C., X. Feng, M. T. Ferdig, R. A. Cooper, J. Mu, D. I. Baruch, A. J. Magill, and X.-Z. Su. 2002. Genetic diversity and chloroquine selective sweeps in Plasmodium falciparum. Nature 418:320-323.
36. Wright, S. 1977. Evolution and the genetics of populations. Vol. 3. Experimental results and evolutionary deductions. University of Chicago Press, Chicago.
37. Wright, F. 1990 The "effective number of codons" used in a gene. Gene 87:23-29.
38. Wright, S. I., B. Lauga, and D. Charlesworth. 2003. Subdivision and haplotype structure in natural populations of Arabidopsis lyrata. Mol. Ecol. 12:1247-1263.
39. Zagnitko, O., J. Jelenska, G. Tevzadze, R. Haselkorn, and P. Gornicki. 2001. An isoleucine/leucine residue in the carboxyltransferase domain of acetyl-CoA carboxylase is critical for interaction with aryloxyphenoxypropionate and cyclohexanedione inhibitors. Proc. Natl. Acad. Sci. USA 98:6617-6622.