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Volumn 86, Issue 4, 2004, Pages 2538-2550

Photoisomerization and Photoionization of the Photoactive Yellow Protein Chromophore in Solution

Author keywords

[No Author keywords available]

Indexed keywords

PARA COUMARIC ACID; RADICAL; THIOMETHYL PARA COUMARIC ACID; UNCLASSIFIED DRUG; YELLOW FLUORESCENT PROTEIN;

EID: 1942519289     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(04)74309-X     Document Type: Article
Times cited : (106)

References (53)
  • 2
    • 0001232338 scopus 로고
    • Spectrographic contributions to lignin chemistry
    • Aulin-Erdtman, G., and R. Sanden. 1968. Spectrographic contributions to lignin chemistry. Acta Chem. Scan. 22:1187-1209.
    • (1968) Acta Chem. Scan. , vol.22 , pp. 1187-1209
    • Aulin-Erdtman, G.1    Sanden, R.2
  • 3
    • 0028577744 scopus 로고
    • Complete chemical structure of photoactive yellow protein: Novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry
    • Baca, M., G. E. Borgstahl, M. Boissinot, P. M. Burke, D. R. Williams, K. A. Slater, and E. D. Getzoff. 1994. Complete chemical structure of photoactive yellow protein: novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry. Biochemistry. 33:14369-14377.
    • (1994) Biochemistry , vol.33 , pp. 14369-14377
    • Baca, M.1    Borgstahl, G.E.2    Boissinot, M.3    Burke, P.M.4    Williams, D.R.5    Slater, K.A.6    Getzoff, E.D.7
  • 4
    • 36749115597 scopus 로고
    • Theory of electronic relaxation in solution in the absence of an activation barrier
    • Bagchi, B., G. R. Fleming, and D. W. Oxtoby. 1983. Theory of electronic relaxation in solution in the absence of an activation barrier. J. Chem. Phys. 78:7375-7385.
    • (1983) J. Chem. Phys. , vol.78 , pp. 7375-7385
    • Bagchi, B.1    Fleming, G.R.2    Oxtoby, D.W.3
  • 6
    • 33748120818 scopus 로고
    • Torsional dynamics of molecules on barrierless potentials in liquids. 1. Temperature and wavelength dependent picosecond studies of triphenylmethane dyes
    • Ben-Amotz, D., and C. Harris. 1987a. Torsional dynamics of molecules on barrierless potentials in liquids. 1. Temperature and wavelength dependent picosecond studies of triphenylmethane dyes. J. Chem. Phys. 86:4856-4870.
    • (1987) J. Chem. Phys. , vol.86 , pp. 4856-4870
    • Ben-Amotz, D.1    Harris, C.2
  • 7
    • 0001016860 scopus 로고
    • Torsional dynamics of molecules on barrierless potentials in liquids. 2. Test of theoretical models
    • Ben-Amotz, D., and C. Harris. 1987b. Torsional dynamics of molecules on barrierless potentials in liquids. 2. Test of theoretical models. J. Chem. Phys. 86:5433-5440.
    • (1987) J. Chem. Phys. , vol.86 , pp. 5433-5440
    • Ben-Amotz, D.1    Harris, C.2
  • 8
    • 0034745934 scopus 로고    scopus 로고
    • Structure of the I1 early intermediate of photoactive yellow protein by FTIR spectroscopy
    • Brudler, R., R. Rammelsberg, T. T. Woo, E. D. Getzoff, and K. Gerwert. 2001. Structure of the I1 early intermediate of photoactive yellow protein by FTIR spectroscopy. Nat. Struct. Biol. 8:265-270.
    • (2001) Nat. Struct. Biol. , vol.8 , pp. 265-270
    • Brudler, R.1    Rammelsberg, R.2    Woo, T.T.3    Getzoff, E.D.4    Gerwert, K.5
  • 9
    • 0034301060 scopus 로고    scopus 로고
    • Ultrafast dielectric response of proteins from dynamics stokes shifting of coumarin in calmodulin
    • Changenet-Barret, P., C. Choma, E. Gooding, W. DeGrado, and R. M. Hochstrasser. 2000. Ultrafast dielectric response of proteins from dynamics stokes shifting of coumarin in calmodulin. J. Phys. Chem. B. 104:9322-9329.
    • (2000) J. Phys. Chem. B , vol.104 , pp. 9322-9329
    • Changenet-Barret, P.1    Choma, C.2    Gooding, E.3    DeGrado, W.4    Hochstrasser, R.M.5
  • 11
    • 0000340302 scopus 로고    scopus 로고
    • Primary events in the photoactive yellow protein chromophore in solution
    • Changenet-Barret, P., P. Plaza, and M. M. Martin. 2001. Primary events in the photoactive yellow protein chromophore in solution. Chem. Phys. Lett. 336:439-444.
    • (2001) Chem. Phys. Lett. , vol.336 , pp. 439-444
    • Changenet-Barret, P.1    Plaza, P.2    Martin, M.M.3
  • 12
    • 0037657894 scopus 로고    scopus 로고
    • Photoactive yellow protein: A prototypic PAS domain sensory protein and development of a common signaling mechanism
    • Cusanovich, M. A., and T. E. Meyer. 2003. Photoactive yellow protein: a prototypic PAS domain sensory protein and development of a common signaling mechanism. Biochemistry. 42:4759-4770.
    • (2003) Biochemistry , vol.42 , pp. 4759-4770
    • Cusanovich, M.A.1    Meyer, T.E.2
  • 13
    • 0001173178 scopus 로고    scopus 로고
    • Environmental effects on the femtosecond-picosecond fluorescence dynamics of photoactive yellow protein: Chromophores in aqueous solutions and in protein nanospaces modified by site-directed mutagenesis
    • Chosrowjan, H., N. Mataga, Y. Shibata, Y. Imamoto, and F. Tokunaga. 1998. Environmental effects on the femtosecond-picosecond fluorescence dynamics of photoactive yellow protein: chromophores in aqueous solutions and in protein nanospaces modified by site-directed mutagenesis. J. Phys. Chem. B. 102:7695-7698.
    • (1998) J. Phys. Chem. B , vol.102 , pp. 7695-7698
    • Chosrowjan, H.1    Mataga, N.2    Shibata, Y.3    Imamoto, Y.4    Tokunaga, F.5
  • 15
    • 33845559566 scopus 로고
    • Temperature and isotope effects on the shape of the optical absorption spectrum of solvated electrons in water
    • Freeman, G. R., and F.-Y. Jou. 1979. Temperature and isotope effects on the shape of the optical absorption spectrum of solvated electrons in water. J. Phys. Chem. 83:2383-2387.
    • (1979) J. Phys. Chem. , vol.83 , pp. 2383-2387
    • Freeman, G.R.1    Jou, F.-Y.2
  • 16
    • 0030850084 scopus 로고    scopus 로고
    • Pump-dump-probe spectroscopy of bacteriorhodopsin: Evidence for a near-IR excited state absorbance
    • Gai, F., J. C. McDonald, and P. Anfinrud. 1997. Pump-dump-probe spectroscopy of bacteriorhodopsin: evidence for a near-IR excited state absorbance. J. Am. Chem. Soc. 119:6201-6202.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 6201-6202
    • Gai, F.1    McDonald, J.C.2    Anfinrud, P.3
  • 17
    • 0038115251 scopus 로고    scopus 로고
    • A simple approach for improving the hybrid MMVB force field: Application to the photoisomerization of s-cis butadiene
    • Garavelli, M., F. Ruggeri, F. Ogliaro, M. J. Bearpark, F. Bernardi, M. Olivucci, and M. A. Robb. 2003. A simple approach for improving the hybrid MMVB force field: application to the photoisomerization of s-cis butadiene. J. Comput. Chem. 24:1357-1363.
    • (2003) J. Comput. Chem. , vol.24 , pp. 1357-1363
    • Garavelli, M.1    Ruggeri, F.2    Ogliaro, F.3    Bearpark, M.J.4    Bernardi, F.5    Olivucci, M.6    Robb, M.A.7
  • 19
    • 0032510475 scopus 로고    scopus 로고
    • Structure at 0.85 Å resolution of an early protein photocycle intermediate
    • Genick, U. K., S. M. Soltis, P. Kuhn, I. L. Canestrelli, and E. D. Getzoff. 1998. Structure at 0.85 Å resolution of an early protein photocycle intermediate. Nature. 392:206-209.
    • (1998) Nature , vol.392 , pp. 206-209
    • Genick, U.K.1    Soltis, S.M.2    Kuhn, P.3    Canestrelli, I.L.4    Getzoff, E.D.5
  • 20
    • 0037156178 scopus 로고    scopus 로고
    • The primary photoreaction of photoactive yellow protein (PYP): Anisotropy changes and excitation wavelength dependence
    • Gensch, T., C. C. Gradinaru, I. H. M. van Stokkum, J. Hendriks, K. Hellingwerf, and R. van Grondelle. 2002. The primary photoreaction of photoactive yellow protein (PYP): anisotropy changes and excitation wavelength dependence. Chem. Phys. Lett. 356:347-354.
    • (2002) Chem. Phys. Lett. , vol.356 , pp. 347-354
    • Gensch, T.1    Gradinaru, C.C.2    Van Stokkum, I.H.M.3    Hendriks, J.4    Hellingwerf, K.5    Van Grondelle, R.6
  • 22
    • 0034300084 scopus 로고    scopus 로고
    • Identifying the pathways of energy transfer between carotenoids and chlorophylls in LHCII and CP29. A multicolor pump-probe study
    • Gradinaru, C. C., I. H. M. van Stokkum, A. A. Pascal, R. van Grondelle, and H. van Amerongen. 2000. Identifying the pathways of energy transfer between carotenoids and chlorophylls in LHCII and CP29. A multicolor pump-probe study. J. Phys. Chem. B. 104:9330-9342.
    • (2000) J. Phys. Chem. B , vol.104 , pp. 9330-9342
    • Gradinaru, C.C.1    Van Stokkum, I.H.M.2    Pascal, A.A.3    Van Grondelle, R.4    Van Amerongen, H.5
  • 23
    • 0037468225 scopus 로고    scopus 로고
    • Photoactive yellow protein, a new type of photoreceptor protein: Will this "yellow lab" bring us where we want to go?
    • Hellingwerf, K. J., J. Hendriks, and T. Gensch. 2003. Photoactive yellow protein, a new type of photoreceptor protein: Will this "yellow lab" bring us where we want to go? J. Phys. Chem. A. 107:1082-1094.
    • (2003) J. Phys. Chem. A , vol.107 , pp. 1082-1094
    • Hellingwerf, K.J.1    Hendriks, J.2    Gensch, T.3
  • 26
    • 0002272436 scopus 로고    scopus 로고
    • Data analysis in time-resolved measurements
    • J. Amesz and A. J. Hoff, editors. Kluwer, Dordrecht, The Netherlands
    • Holzwarth, A. R. 1996. Data analysis in time-resolved measurements. In Biophysical Techniques in Photosynthesis. J. Amesz and A. J. Hoff, editors. Kluwer, Dordrecht, The Netherlands.
    • (1996) Biophysical Techniques in Photosynthesis
    • Holzwarth, A.R.1
  • 27
    • 0029403121 scopus 로고
    • Subpicosecond measurements of polar solvation dynamics-coumarin 153 revisited
    • Horng, M. L., J. A. Gardecki, A. Papazyan, and M. Maroncelli. 1995. Subpicosecond measurements of polar solvation dynamics-coumarin 153 revisited. J. Phys. Chem. 99:17311-17337.
    • (1995) J. Phys. Chem. , vol.99 , pp. 17311-17337
    • Horng, M.L.1    Gardecki, J.A.2    Papazyan, A.3    Maroncelli, M.4
  • 28
    • 0000842874 scopus 로고    scopus 로고
    • Observation of the "isomerization states" of HCP by stimulated emission pumping spectroscopy: Comparison between theory and experiment
    • Ishikawa, H., C. Nagao, N. Mikami, and R. Field. 1997. Observation of the "isomerization states" of HCP by stimulated emission pumping spectroscopy: comparison between theory and experiment. J. Chem. Phys. 106:2980-2983.
    • (1997) J. Chem. Phys. , vol.106 , pp. 2980-2983
    • Ishikawa, H.1    Nagao, C.2    Mikami, N.3    Field, R.4
  • 30
    • 0000405834 scopus 로고    scopus 로고
    • Solvation dynamics in protein environments studied by photon echo spectroscopy
    • Jordanides, X. J., M. J. Lang, X. Y. Song, and G. R. Fleming. 1999. Solvation dynamics in protein environments studied by photon echo spectroscopy. J. Phys. Chem. B. 103:7995-8005.
    • (1999) J. Phys. Chem. B , vol.103 , pp. 7995-8005
    • Jordanides, X.J.1    Lang, M.J.2    Song, X.Y.3    Fleming, G.R.4
  • 32
    • 0029964634 scopus 로고    scopus 로고
    • Evidence for trans-cis isomerization of the p-coumaric acid chromophore as the photochemical basis of the photocycle of photoactive yellow protein
    • Kort, R., H. Vonk, X. Xu, W. D. Hoff, W. Crielaard, and K. J. Hellingwerf. 1996. Evidence for trans-cis isomerization of the p-coumaric acid chromophore as the photochemical basis of the photocycle of photoactive yellow protein. FEBS Lett. 382:73-78.
    • (1996) FEBS Lett. , vol.382 , pp. 73-78
    • Kort, R.1    Vonk, H.2    Xu, X.3    Hoff, W.D.4    Crielaard, W.5    Hellingwerf, K.J.6
  • 33
    • 0000829808 scopus 로고    scopus 로고
    • Femtosecond hole-burning spectroscopy with stimulated emission pumping and supercontinuum probing
    • Kovalenko, S. A., J. Ruthmann, and N. P. Ernsting. 1998. Femtosecond hole-burning spectroscopy with stimulated emission pumping and supercontinuum probing. J. Chem. Phys. 109:1894-1900.
    • (1998) J. Chem. Phys. , vol.109 , pp. 1894-1900
    • Kovalenko, S.A.1    Ruthmann, J.2    Ernsting, N.P.3
  • 34
    • 0029731183 scopus 로고    scopus 로고
    • Spectral tuning, fluorescence, and photoactivity in hybrids of photoactive yellow protein, reconstituted with native or modified chromophores
    • Kroon, A. R., W. D. Hoff, H. P. Fennema, J. Gijzen, G. J. Koomen, J. W. Verhoeven, W. Crielaard, and K. J. Hellingwerf. 1996. Spectral tuning, fluorescence, and photoactivity in hybrids of photoactive yellow protein, reconstituted with native or modified chromophores. J. Biol. Chem. 271:31949-31956.
    • (1996) J. Biol. Chem. , vol.271 , pp. 31949-31956
    • Kroon, A.R.1    Hoff, W.D.2    Fennema, H.P.3    Gijzen, J.4    Koomen, G.J.5    Verhoeven, J.W.6    Crielaard, W.7    Hellingwerf, K.J.8
  • 38
    • 0035902523 scopus 로고    scopus 로고
    • The relaxation dynamics of the excited electronic states of retinal in bacteriorhodopsin by two-pump probe femtosecond studies
    • Logunov, S. L., V. V. Volkov, M. Braun, and M. A. El-Sayed. 2001. The relaxation dynamics of the excited electronic states of retinal in bacteriorhodopsin by two-pump probe femtosecond studies. Proc. Natl. Acad. Sci. USA. 98:8475-8479.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 8475-8479
    • Logunov, S.L.1    Volkov, V.V.2    Braun, M.3    El-Sayed, M.A.4
  • 39
    • 0035836710 scopus 로고    scopus 로고
    • On the absorbance changes in the photocycle of the photoactive yellow protein: A quantum-chemical analysis
    • Molina, V., and M. Merchan. 2001. On the absorbance changes in the photocycle of the photoactive yellow protein: a quantum-chemical analysis. Proc. Natl. Acad. Sci. USA. 98:4299-4304.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 4299-4304
    • Molina, V.1    Merchan, M.2
  • 40
    • 33947465058 scopus 로고
    • Fluorescence and intemal rotation: Their dependence on viscosity of the medium
    • Oster, G., and Y. Nishijima. 1956. Fluorescence and intemal rotation: their dependence on viscosity of the medium. J. Am. Chem. Soc. 78:1581-1584.
    • (1956) J. Am. Chem. Soc. , vol.78 , pp. 1581-1584
    • Oster, G.1    Nishijima, Y.2
  • 43
    • 0000872419 scopus 로고
    • Broad spectral features in the stimulated-emission pumping of acetylene
    • Pique, J., Y. Engel, R. Levine, Y. Chen, R. Field, and J. Kinsery. 1988. Broad spectral features in the stimulated-emission pumping of acetylene. J. Chem. Phys. 88:5972-5974.
    • (1988) J. Chem. Phys. , vol.88 , pp. 5972-5974
    • Pique, J.1    Engel, Y.2    Levine, R.3    Chen, Y.4    Field, R.5    Kinsery, J.6
  • 44
    • 0037434722 scopus 로고    scopus 로고
    • Ab initio study of cis-trans photoisomerization in stilbene and ethylene
    • Quenneville, J., and T. J. Martínez. 2003. Ab initio study of cis-trans photoisomerization in stilbene and ethylene. J. Phys. Chem. A. 107:829-837.
    • (2003) J. Phys. Chem. A , vol.107 , pp. 829-837
    • Quenneville, J.1    Martínez, T.J.2
  • 46
    • 0037205880 scopus 로고    scopus 로고
    • Following evolution of bacteriorhodopsin in its reactive excited state via stimulated emission pumping
    • Ruhman, S., B. Hou, N. Freidman, M. Ottolenghi, and M. Sheves. 2002. Following evolution of bacteriorhodopsin in its reactive excited state via stimulated emission pumping. J. Am. Chem. Soc. 124:8854-8858.
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 8854-8858
    • Ruhman, S.1    Hou, B.2    Freidman, N.3    Ottolenghi, M.4    Sheves, M.5
  • 47
    • 0037140791 scopus 로고    scopus 로고
    • Gas phase photochemistry of the photoactive yellow protein chromophore trans-p-coumaric acid
    • Ryan, W., D. J. Gordon, and D. H. Levy. 2002. Gas phase photochemistry of the photoactive yellow protein chromophore trans-p-coumaric acid. J. Am. Chem. Soc. 124:6194-6201.
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 6194-6201
    • Ryan, W.1    Gordon, D.J.2    Levy, D.H.3
  • 48
    • 0027324441 scopus 로고
    • The eubacterium Ectothiorhodospira halophila is negatively phototactic, with a wavelength dependence that fits the absorption spectrum of the photoactive yellow protein
    • Sprenger, W. W., W. D. Hoff, J. P. Armitage, and K. J. Hellingwerf. 1993. The eubacterium Ectothiorhodospira halophila is negatively phototactic, with a wavelength dependence that fits the absorption spectrum of the photoactive yellow protein. J. Bacteriol. 175:3096-3104.
    • (1993) J. Bacteriol. , vol.175 , pp. 3096-3104
    • Sprenger, W.W.1    Hoff, W.D.2    Armitage, J.P.3    Hellingwerf, K.J.4
  • 49
    • 0028918464 scopus 로고
    • Photoinduced volume change and energy storage associated with the early transformations of the photoactive yellow protein from Ectothiorhodospira halophila
    • van Brederode, M. E., T. Gensch, W. D. Hoff, K. J. Hellingwerf, and S. E. Braslavsky. 1995. Photoinduced volume change and energy storage associated with the early transformations of the photoactive yellow protein from Ectothiorhodospira halophila. Biophys. J. 63:1101-1109.
    • (1995) Biophys. J. , vol.63 , pp. 1101-1109
    • Van Brederode, M.E.1    Gensch, T.2    Hoff, W.D.3    Hellingwerf, K.J.4    Braslavsky, S.E.5
  • 50
    • 0030446427 scopus 로고    scopus 로고
    • Glu46 donates a proton to the 4-hydroxycinnamate anion chromophore during the photocycle of photoactive yellow protein
    • Xie, A., W. D. Hoff, A. R. Kroon, and K. J. Hellingwerf. 1996. Glu46 donates a proton to the 4-hydroxycinnamate anion chromophore during the photocycle of photoactive yellow protein. Biochemistry. 35:14671-14678.
    • (1996) Biochemistry , vol.35 , pp. 14671-14678
    • Xie, A.1    Hoff, W.D.2    Kroon, A.R.3    Hellingwerf, K.J.4
  • 51
    • 0035852878 scopus 로고    scopus 로고
    • Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation
    • Xie, A., L. Kelemen, J. Hendriks, B. J. White, K. J. Hellingwerf, and W. D. Hoff. 2001. Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation. Biochemistry. 40:1510-1517.
    • (2001) Biochemistry , vol.40 , pp. 1510-1517
    • Xie, A.1    Kelemen, L.2    Hendriks, J.3    White, B.J.4    Hellingwerf, K.J.5    Hoff, W.D.6
  • 52
    • 0034818260 scopus 로고    scopus 로고
    • Femtosecond dynamics of rhodopsin photochemistry probed by double pump spectroscopic approach
    • Yan, M., L. Rothberg, and R. Callender. 2001. Femtosecond dynamics of rhodopsin photochemistry probed by double pump spectroscopic approach. J. Phys. Chem. B. 105:856-859.
    • (2001) J. Phys. Chem. B , vol.105 , pp. 856-859
    • Yan, M.1    Rothberg, L.2    Callender, R.3
  • 53
    • 0035859406 scopus 로고    scopus 로고
    • Photocycle dynamics and vibrational spectroscopy of the E46Q mutant of photoactive yellow protein
    • Zhou, Y., L. Ujj, T. E. Meyer, M. A. Cusanovich, and G. H. Atkinson. 2001. Photocycle dynamics and vibrational spectroscopy of the E46Q mutant of photoactive yellow protein. J. Phys. Chem. A. 105:5719-5726.
    • (2001) J. Phys. Chem. A , vol.105 , pp. 5719-5726
    • Zhou, Y.1    Ujj, L.2    Meyer, T.E.3    Cusanovich, M.A.4    Atkinson, G.H.5


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