Genetic divergence, population structure and historical demography of rare springsnails (Pyrgulopsis) in the lower Colorado River basin

Molecular Ecology

Volumn 13, Issue 5, 2004, Pages 1173-1187

  Hurt, Carla R ^a  

^a ARIZONA STATE UNIVERSITY   (United States)

Author keywords

Conservation; Mollusca; mtDNA; Phylogeography; Population structure; Pyrgulopsis

Indexed keywords

FRESH WATER; MITOCHONDRIAL DNA; PRIMER DNA;

ANIMAL; ARTICLE; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA SEQUENCE; ENVIRONMENT; ENVIRONMENTAL PROTECTION; EVOLUTION; GENE FREQUENCY; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HAPLOTYPE; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; POPULATION GENETICS; SINGLE STRAND CONFORMATION POLYMORPHISM; SNAIL; SPECIES DIFFERENCE; UNITED STATES;

ANIMALS; BASE SEQUENCE; CLUSTER ANALYSIS; CONSERVATION OF NATURAL RESOURCES; DNA PRIMERS; DNA, MITOCHONDRIAL; ENVIRONMENT; EVOLUTION; FRESH WATER; GENE FREQUENCY; GENETICS, POPULATION; GEOGRAPHY; HAPLOTYPES; MOLECULAR SEQUENCE DATA; POLYMORPHISM, SINGLE-STRANDED CONFORMATIONAL; SEQUENCE ANALYSIS, DNA; SNAILS; SOUTHWESTERN UNITED STATES; SPECIES SPECIFICITY; VARIATION (GENETICS);

GASTROPODA; INVERTEBRATA; MOLLUSCA; PYRGULOPSIS;

EID: 1942485945     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2004.02121.x     Document Type: Article

References (52)

1. Bermingham E, Lessios HA (1993) Rate variation of protein and mitochondrial DNA evolution as revealed by sea urchins separated by the Isthmus of Panama. Proceedings of the National Academy Science U.S.A., 90, 2734-2738.
2. Boeters HD (1982) Species concept of Prosobranch freshwater molluscs in Western Europe, 2. Malacologia, 22, 499-504.
3. Bucklin A (1992) Use of formalin-preserved samples for molecular analysis. Newsletter of Crustacean Molecular Techniques, 2, 3.
4. Colgan DJ, Ponder WF (1994) The evolutionary consequences of restriction to gene flow: examples from hydrobiid snails. Nautilus Suppl., 2, 25-43.
5. Dillon RT (1988) The influence of minor human disturbance on biochemical variation in a population of freshwater snails. Biological Conservation, 43, 137-144.
6. Douglas ME, Minckley WL, DeMarais BD (1999) Did vicariance mold phenotypes of Western North American fishes: evidence from Gila River cyprinids. Evolution, 53, 246.
7. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
8. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791.
9. Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294-299.
10. Glavac DM, Dean M (1993) Optimization of the single-strand conformation polymorphism (SSCP) technique for detection of point mutations. Human Mutation, 2, 404-414.
11. Hall TA (1999) BIOEDIT: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symposium Series, 41, 95-98.
12. Hedrick PW, Kalinowski S (2000) Inbreeding depression and conservation biology. Annual Review of Ecology and Systematics, 31, 139-162.
13. Hendrickson DA, Minckley WL, Miller RR, Siebert DJ, Minckley PH (1980) Fishes of the Rio Yaqui Basin, Mexico and United States. Journal of the Arizona-Nevada Academy of Sciences, 15, 65-106.
14. Hershler R (1994) A review of the North American snail genus Pyrgulopsis (Hydrobiidae). Smithsonian Contributions to Zoology, 554, 1-115.
15. Hershler R (2000) Biogeography in the Death Valley region: evidence from springsnails (Hydrobiidae: Tryonia). Zoological Journal of the Linnean Society, 126, 335-339.
16. Hershler R, Landye JJ (1988) Arizona Hydrobiidae (Prosobranchia: Rissoacea). Smithsonian Contributions to Zoology, 459, 1-63.
17. Hershler R, Thompson FG (1986) North American Hydrobiidae (Gastropoda: Rissoacea): redescription and systematic relationships of Tryonia Stimpson, 1865, and Pyrgulopsis Call and Pilsbry, 1886. Nautilus, 101, 25-32.
18. Kabat AR, Hershler R (1993) The prosobranch snail family Hydrobiidae (Gastropoda: Rissooidea): review of classification and supraspecific taxa. Smithsonian Contributions to Zoology, 547, 1-94.
19. Knowlton N, Weigt LA (1998) New dates and new rates for divergence across the Isthmus of Panama. Proceedings of the Royal Society of London B, 265, 2257-2263.
20. Kuhner M, Yamato J, Felsenstein J (1998) Maximum likelihood estimation of population growth rates based on the coalescent. Genetics, 149, 429-434.
21. Kumar S (1996) PHYLTEST: Phylogenetic Hypothesis Testing Software, Version 2.0. Pennsylvania State University, University Park, PA.
22. Kumar S, Koichiro T, Jakobsen IB, Nei M (2001) Molecular Evolutionary Genetic Analysis (MEGA), Version 2.1. Arizona State University, Tempe, AZ. Available at: http://www.megasoftware.net/.
23. Landye JJ (1981) Current status of endangered, threatened and/or rare mollusks of New Mexico and Arizona. US Fish and Wildlife Service Report, Office of Rare or Endangered Species, Albequerque, NM.
24. Liu H-P, Hershler R, Clift K (2003) Mitochondrial DNA sequences reveal extensive cryptic diversity within a western American springsnail. Molecular Ecology, 12, 2771-2782.
25. Melton MA (1960) Origin of the drainage of southeastern Arizona. Arizona Geological Digest Society, 3, 113-122.
26. Minckley WL (1999) Ecological review and management recommendation for recovery of the endangered Gila topminnow. Great Basin Naturalist, 9, 230-244.
27. Minckley WL, Hendrickson DA, Bond CE (1986) Geography of Western North American freshwater fishes: description and relationships to intracontinental tectonism. In: The Zoogeography of North American Freshwater Fishes (eds Hocutt CH, Wiley EO), pp. 102-121. Wiley, New York.
28. Mladenka GC, Minshall GW (2001) Variation in the life history and abundance of three populations of Bruneau hot springsnails (Pyrgulopsis bruneausensis). Western North American Naturalist, 60, 204-212.
29. Myers MJ, Resh VH (1999) Spring-formed wetlands of the arid west. In: Invertebrates in Freshwater Wetlands of North America (Batzer PB, Rader RB, Wissinger SA eds), pp. 811-828. Wiley, New York.
30. Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences of the USA, 76, 5269-5273.
31. 2 environment: importance of extreme chemical habitats as refugia. Freshwater Biology, 42, 225-234.
32. Parker KM, Hughes K, Kim TJ, Hedrick PW (1999) Isolation and characterization of microsatellite loci from the Gila topminnow (Poeciliopsis o. occidentalis) and examination in guppies (Poecilia reticulata). Molecular Ecology, 7, 357-363.
33. Ponder WF, Colgan DJ (2002) What makes a narrow-range taxon? Insights from Australian freshwater snails. Invertebrate Systematics, 16, 571-582.
34. Ponder WF, Colgan DJ, Clar GA, Miller AC, Terzis T (1994) Micgeographic, genetic and morphological differentiation of freshwater snails -the Hydrobiidae of Wilson's Promontory, Victoria, south-eastern Australia. Australian Journal of Zoology, 42, 557-678.
35. Ponder C, Eggler WP, Colgan DJ (1995) Genetic differentiation of aquatic snails (Gastropoda: Hydrobiidae) from artesian springs in arid Australia. Biology Journal of the Linnaean Society, 56, 553-596.
36. Rohlf FJ (1973) ALGORITHM 76. Hierarchical clustering using the minimum spanning tree. Computer Journal, 6, 93-95.
37. Rosenberg M (2003) PASSAGE, Version 1.0.3.8: Pattern Analysis, Spatial Statistics, and Geographic Exegesis. http://lsweb.la.asu.edu/ rosenberg/Passage/
38. Saccheri I, Kussarin M, Kankare M, Vikman P, Fortelius W, Hanski I (1998) Inbreeding and extinction in a butterfly metapopulation. Nature, 392, 491-494.
39. Schneider SD, Roessli D, Excoffier L (2000) ARLEQUIN, A Software for Population Genetics Data Analysis. Version 2.000. Genetics and Biometry Laboratory, University of Geneva, Switzerland.
40. Smouse PE, Long JC, Sokal RR (1986) Multiple regression and correlation extensions of the Mantel test of matrix correspondence. Systematic Zoology, 35, 627-632.
41. Rice WR (1985) Analyzing tables of statistical tests. Evolution, 43, 223-225.
42. Taylor DW (1970) West American freshwater Mollusca, 1: bibliography of Pleistocene and recent species. San Diego Society of Natural History, 4, 1-73.
43. Taylor DW (1985) Evolution of freshwater drainages and molluscs in western North America. In: Late Cenozoic History of the Pacific Northwest (ed. Smiley CJ), pp. 265-321. AAAS Pacific Division, San Francisco.
44. Taylor DW (1987) Fresh-water mollusks from New Mexico and vicinity. New Mexico Bureau of Mines and Minerals, 116, 1-50.
45. Taylor DW (1988) Aspects of freshwater mollusc ecological biogeography. Mammalogy, Palaeoclimatology, Palaeoecology, 62, 511-576.
46. Walsh PS, Metzger DA, Higuchi R (1991) Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechnique, 10, 506-513.
47. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
48. Wilke T (2003) Salenthydrobia General nov. (Rissooidea: Hydrobiidae): a potential relict of the Messinian salinity crisis. Zoological Journal of the Linnean Society, 70, 89-105.
49. Wilke T, Davis GM, Falniowski A, Giusti F, Bodon M, Szarowska M (2001) Molecular systematics of Hydrobiidae (Mollusca: Gastropoda: Rissooidea): testing monophyly and phylogenetic relationships. Proceedings of the Academy of Natural Sciences, Philadelphia, 151, 1-21.
50. Wilke T, Pfenninger M (2002) Separating historic events from recurrent processes in cryptic species: phylogeography of mud snails (Hydrobia spp.). Molecular Ecology, 11, 1439-1451.
51. Williams ST, Knowlton N (2001) Mitochondrial pseudogenes are pervasive and often insidious in the snapping shrimp genus Alpheus. Molecular Biology and Evolution, 18, 1484-1493.
52. Zhang DX, Hewitt GM (1996) Nuclear integrations: challenges for mitochondrial markers. Trends in Ecology and Evolution, 11, 247-251.