Microfluidic chip for high efficiency DNA extraction

Lab on a Chip

Volumn 4, Issue 2, 2004, Pages 141-147

  Chung, Yung Chiang ^a   Jan, Ming Shiung ^a   Lin, Yu Cheng ^b   Lin, Ju Hwa ^a   Cheng, Wang Chin ^a   Fan, Chia Yu ^a  

^a INDUSTRIAL TECHNOLOGY RESEARCH INSTITUTE   (Taiwan)

^b NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; BACTERIAL CELL; BLOOD; CELL COUNT; CONTROLLED STUDY; CYTOLYSIS; DEVICE; DNA EXTRACTION; ESCHERICHIA COLI; FLOW; IMMOBILIZATION; MICROFLUIDIC CHIP; NONHUMAN; PRIORITY JOURNAL; SERUM;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 1942469912     PISSN: 14730197     EISSN: None     Source Type: Journal    
DOI: 10.1039/b310849j     Document Type: Article

References (26)

1. R. Drmanac, S. Drmanac, Z. Strezoska, T. Paunesku, I. Labat, M. Zeremski, J. Snoddy, W. K. Funkhouser, B. Koop, L. Hood and R. Crkvenjakov, DNA sequence determination by hybridization: a strategy for efficient large-scale sequencing, Science, 1993, 260, 1649-1652.
2. J. B. Lamture, K. L. Beattie, B. E. Burke, M. D. Eggers, D. J. Ehrlich, R. Fowler, M. A. Hollis, B. B. Kosicki, R. K. Reich, S. E. Smith, R. S. Varma and M. E. Hogan, Direct detection of nucleic acid hybridization on the surface of a charge coupled device, Nucleic Acids Res., 1994, 22, 2121-2125.
3. R. G. Sosnowski, E. Tu, W. F. Butler, J. P. O'Connell and M. J. Heller, Rapid determination of single base mismatch mutations in DNA hybrids by direct electric field control, Proc. Natl. Acad. Sci. U. S. A., 1997, 94, 1119-1123.
4. C. T. Wittwer and D. J. Garling, Rapid cycle DNA amplification: time and teperature optimization, BioTechniques, 1991, 10, 76-83.
5. A. F. R. Huhmer, Noncontact infrared-mediated thermocycling for effective polymerase chain reaction amplification of DNA in nanoliter volumes, Anal. Chem., 2000, 72, 5507-5512.
6. Y. C. Lin, M. Y. Huang, K. C. Young, T. T. Chang and C. T. Wu, A rapid micro-PCR system for hepatitis C virus amplification, Sens. Actuators B, 2000, 71, 2-8.
7. Y. C. Lin, C. C. Yang and M. Y. Huang, Simulation and experimental validation of micro PCR chips, Sens. Actuators B, 2000, 71, 127-133.
8. D. S. Yoon, Y. S. Lee, Y. Lee, H. J. Cho, S. W. Sung, K. W. Oh, J. Cha and G. Lim, Precise temperature control and rapid thermal cycling in a micromachined DNA polymerase chain reaction chip, J. Micromech. Microeng., 2002, 12, 813-823.
9. J. Gong, F. Traganos and Z. Darzynkiewicz, A selective procedure for DNA extraction from apoptotic cells applicable for gel electrophoresis and flow cytometry, Anal. Biochem., 1994, 218, 314-319.
10. M. Q. Deng and D. O. Cliver, Rapid DNA extraction methods and new primers for randomly amplified polymorphic DNA analysis of Giardia duodenalis, J. Microbiol. Methods, 1999, 37, 193-200.
11. H. Burgmann, M. Pesaro, F. Widmer and J. Zeyer, A strategy for optimizing quality and of DNA extracted from soil, J. Microbiol. Methods, 2001, 45, 7-20.
12. G. Lloyd-Jones and D. W. F. Hunter, Comparison of rapid DNA extraction methods applied to constructing New Zealand soils, Soil Biol. Biochem., 2001, 33, 2053-2059.
13. M. G. LaMontagne, F. C. Michel Jr., P. A. Holden and C. A. Reddy, Evaluation of extraction and purification methods for obtaining PCR-amplifiable DNA from compost for microbial community analysis, J. Microbiol. Methods, 2002, 49, 255-264.
14. R. V. F. Lachica, P. D. Hoeprich and C. Genigeorgis, Nuclease production and lysostaphin susceptibility of Staphylococcus aureus and other catalase-positive cocci, Appl. Microbiol., 1971, 21, 823-826.
15. A. Koshiro and S. Oie, Bactericidal activity of ethanol against glucose nonfermentative Gram-negative bacilli, Microbios, 1984, 40, 33-40.
16. A. Kalia, A. Rattan and P. Chopra, A method for extraction of high-quality and high-quantity genomic DNA generally applicable to pathogenic bacteria, Anal. Biochem., 1999, 275, 1-5.
17. J. Oster, J. Parker and L. Brassard, Polyvinyl-alcohol-based magnetic beads for rapid and efficient separation of specific or unspecific nucleic acid sequences, J. Magn. Magn. Mater., 2001, 225, 145-150.
18. B. Yoza, M. Matsumoto and T. Matsunaga, DNA extraction using modified bacterial magnetite particles in the presence of amino silane compound, J. Biotechnol., 2001, 94, 217-224.
19. B. Yoza, A. Arakaki and T. Matsunaga, DNA extraction using bacterial magnetic particles modified with hyperbranched polyamidoamine dendrimer, J. Biotechnol., 2003, 101, 219-228.
20. T. Volossiouk, E. J. Robb and R. N. Nazar, Direct DNA extraction for PCR-mediated assays of soil organism, Appl. Environ. Microbiol., 1995, 61, 3972-3976.
21. J. W. Chan and P. H. Goodwin, Extraction of genomic DNA from extracellular polysaccharide-synthesizing Gram-negative bacteria, Biotechniques, 1995, 18, 418-422.
22. H. Masoud, M. Ho, T. Schoolhardt and M. B. Perry, Characterization of the capsular polysaccharide of Burkholderia (Pseudomonas) pseudomallei 304b, J. Bacteriol., 1997, 179, 5663-5669.
23. S. Nair, R. Karim, M. J. Cardosa, G. Ismail and T. Pang, Convenient and versatile DNA extraction using agarose plugs for ribotyping of problematic bacterial species, J. Microbiol. Methods, 1999, 38, 63-67.
24. Y. K. Lee, H. K. Kim, C. L. Liu and H. K. Lee, A simple method for DNA extraction from marine bacteria that produce extracellular materials, J. Microbiol. Methods, 2003, 52, 245-250.
25. M. Howeler, W. C. Ghiorse and L. P. Walker, A quantitative analysis of DNA extraction and purification from compost, J. Microbiol. Methods, 2003, 54, 37-45.
26. C. P. Jen, W. D. Wu, Y. C. Lin, G. G. Wu, C. C. Chang and Y. C. Chung, Experimental verification of a bi-directional driving system for microfluids, The Sixth International Symposium on Micro Total Analysis System, November 3-7, 2002, Nara, Japan, pp. 736-738.