Optical Spectroscopic Differentiation of Various Equilibrium Denatured States of Horse Cytochrome c

Biopolymers

Volumn 73, Issue 6, 2004, Pages 716-726

  Xu, Qi ^a   Keiderling, Timothy A ^a  

^a UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

Author keywords

CD; Cytochrome c; Denatured state; Infrared spectroscopy; Thermal denaturation

Indexed keywords

CONCENTRATION (PROCESS); FOURIER TRANSFORM INFRARED SPECTROSCOPY; HIGH TEMPERATURE EFFECTS; PIGMENTS;

OPTICAL SPECTROSCOPY; THERMAL DENATURATION;

BIOPOLYMERS;

CYTOCHROME C;

ABSORPTION SPECTROSCOPY; ARTICLE; CIRCULAR DICHROISM; HIGH TEMPERATURE PROCEDURES; PROTEIN DENATURATION; PROTEIN FOLDING; SPECTROSCOPY; THERMODYNAMICS; ULTRAVIOLET RADIATION;

ANIMALS; CIRCULAR DICHROISM; CYTOCHROMES C; HORSES; PROTEIN DENATURATION; SPECTROPHOTOMETRY, ULTRAVIOLET; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EQUUS CABALLUS;

EID: 1942467089     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/bip.20011     Document Type: Article

References (72)

1. Shortle, D. FASEB J 1996, 10, 27-34.
2. Byler, D. M.; Lee, D. L.; Randall, C. S. In Infrared Analysis of Peptides and Proteins: Principles and Applications; Singh, B. R., Ed.; ACS Symposium Series; American Chemical Society: Washington DC, 2000; pp 145-158.
3. Johnson, W. C. Method Enzymol 1992, 210, 426-447.
4. Sreerama, N.; Woody, R. W. In Circular Dichroism Principles and Applications; Nakanishi, K., Berova, N., Woody, R. W., Eds.; Wiley-VCH: New York, 2000; pp 601-620.
5. Venyaminov, S. Y.; Yang, J. T. In Circular Dichroism and the Conformational Analysis of Biomolecules; Fasman, G. D., Ed.; Plenum Press: New York, 1996; pp 69-107.
6. Barron, L. D.; Hecht, L. In Circular Dichroism, Principles and Applications; Nakanishi, K., Berova, N., Woody, R. W., Eds.; Wiley-VCH, New York, 2000; pp 667-701.
7. Fink, A. L.; Seshadri, S.; Khurana, R.; Oberg, K. A. In Infrared Analysis of Peptides and Proteins: Principles and Applications; Singh, B. R., Ed.; ACS Symposium Series; American Chemical Society: Washington DC, 2000; pp 132-144.
8. Goormaghtigh, E.; Ruysschaert, J. M. In Infrared Analysis of Peptides and Proteins: Principles and Applications; Singh, B. R., Ed.; ACS Symposium Series; American Chemical Society: Washington DC, 2000; pp 96-116.
9. Keiderling, T. A. In Circular Dichroism: Principles and Applications; Berova, N., Nakanishi, K., Woody, R. A., Eds.; Wiley-VCH: New York, 2000; pp 621-666.
10. Surewicz, W.; Mantsch, H. H.; Chapman, D. Biochemistry 1993, 32, 389-394.
11. Stelea, S. D.; Pancoska, P.; Benight, A. S.; Keiderling, T. A. Protein Sci 2001, 10, 970-978.
12. Stelea, S. D.; Keiderling, T. A. Biophys J 2002, 83, 2259-2269.
13. Keiderling, T. A.; Wang, B.; Urbanova, M.; Pancoska, P.; Dukor, R. K. Faraday Discuss 1994, 99, 263-286.
14. Urbanova, M.; Dukor, R. K.; Pancoska, P.; Gupta, V. P.; Keiderling, T. A. Biochemistry 1991, 30, 10479-10485.
15. Lakowicz, J. R. In Modern Physical Methods in Biochemistry, Part B; Neuberger, A., Van Deenen, L. L. M., Eds.; Elsevier: Amsterdam, 1988.
16. Callender, R. H.; Dyer, R. B.; Gilmanshin, R.; Woodruff, W. H. Annu Rev Phys Chem 1998, 49, 173-202.
17. Jonas, J. Biochim Biophys Acta 2002, 1595, 145-159.
18. Evans, J. N. S. Biomolecular NMR Spectroscopy; Oxford University Press: New York, 1995.
19. Mantsch, H. H.; Chapman, D. Eds. Infrared Spectroscopy of Biomolecules; Wiley-Liss: Chichester, UK, 1996.
20. Keiderling, T. A.; Xu, Q. In Advances in Protein Chemistry: Unfolded Protein; Rose, G. D., Ed.; Academic Press: San Diego, CA; 2002; pp 111-161.
21. Arrondo, J. L. R.; Goni, F. M. Prog Biophys Mol Biol 1999, 72, 367-405.
22. Pancoska, P.; Bitto, E.; Janota, V.; Urbanova, M.; Gupta, V. P.; Keiderling, T. A. Protein Sci 1995, 4, 1384-1401.
23. Elove, G. A.; Chaffotte, A. F.; Roder, H.; Goldberg, M. E. Biochemistry 1992, 31, 6876-6883.
24. Houry, W. A.; Rothwarf, D. M.; Scheraga, H. A. Biochemistry 1994, 33, 2516-2530.
25. Roder, H.; Elove, G. A.; Englander, S. W. Nature 1988, 700-704.
26. Udgaonkar, J. B.; Baldwin, R. L. Nature 1988, 335, 694-699.
27. Miranker, A.; Radford, S. E.; Karplus, M.; Dobson, C. M. Nature 1991, 349, 633-636.
28. Miranker, A.; Robinson, C. V.; Radford, S. E.; Dobson, C. M. FASEB J 1996, 10, 93-101.
29. Feng, Y.; Roder, H.; Englander, S. W.; Wand, A. J.; Di Stefano, D. L. Biochemistry 1989, 28, 195-203.
30. Feng, Y.; Roder, H.; Englander, S. W. Biophys J 1990, 57, 15-22.
31. Bushnell, G. W.; Louie, G. V.; Brayer, G. D. J Mol Biol 1990, 214, 585-595.
32. Brems, D. N.; Stellwagen, E. J Biol Chem 1983, 258, 3655-3660.
33. Kuwajima, K.; Yamaya, H.; Miwa, S.; Sugai, S.; Nagamura, T. FEBS Lett 1987, 221, 115-118.
34. Tsong, T. Y. Biochemistry 1976, 15, 5467-5473.
35. Babul, J.; Stellwagen, E. Biochemistry 1972, 11, 1195-1200.
36. Ikai, A.; Fish, W.; Tanford, C. J Mol Biol 1973, 73, 165-184.
37. Takahashi, S.; Yeh, S. R.; Das, T. K.; Chan, C. K.; Gottfried, D. S.; Rousseau, D. L. Nature Struct Biol 1997, 4, 44-50.
38. Yeh, S. R.; Han, S. W.; Rousseau, D. L. Acc Chem Res 1998, 31, 727-736.
39. Stellwagen, E.; Babul, J. Biochemistry 1975, 14, 5135-5140.
40. Goto, Y.; Calciano, L.; Fink, A. L. Proc Natl Acad Sci USA 1990, 87, 573-577.
41. Goto, Y.; Hagihara, Y.; Hamada, D.; Hoshino, M.; Nishii, I. Biochemistry, 1993, 32, 11878-11885.
42. Jeng, M. F.; Englander, S. W.; Elove, G. A.; Wand, A. J.; Roder, H. Biochemistry 1990, 29, 10433-10437.
43. Goto, Y.; Takahashi, N.; Fink, A. L. Biochemistry 1990, 29, 3480-3488.
44. Wang, L., Ph.D. thesis, University of Illinois at Chicago: Chicago, 1993.
45. Keiderling, T. A.; Kubelka, J.; Hilario, J. In Vibrational Spectroscopy of Polymers and Biological Systems, Braiman, M., Gregoriou, V., Eds.; Marcel Dekker: Amsterdam-New York, in press.
46. Keiderling, T. A. In Practical Fourier Transform Infrared Spectroscopy; Krishnan, K., Ferraro, J. R., Ed.; Academic Press: San Diego, 1990; pp 203-284.
47. Fink, A. L.; Calciao, L. J.; Goto, Y.; Kurotsu, T.; Palleros, D. Biochemistry 1994, 33, 12504-12511.
48. Shechter, E.; Saludjian, P. Biopolymers 1967, 5, 788-790.
49. Jordan, T.; Eads, J. C.; Spiro, T. G. Protein Sci 1995, 4, 716-728.
50. Hamada, D.; Kuroda, Y.; Kataoka, M.; Aimoto, S.; Yoshimura, T.; Goto, Y. J Mol Biol 1996, 256, 172-186.
51. Hamada, D.; Fukada, H.; Takahashi, K.; Goto, Y. Proc Natl Acad Sci USA 1994, 91, 10325-10329.
52. Jeng, M. F.; Englander, S. W. J Mol Biol 1991, 221, 1045-1061.
53. Ismail, A. A.; Mantsch, H. H.; Wong, P. T. Biochim Biophys Acta 1992, 1121, 183-188.
54. Clark, A. H.; Saunderson, D. H. P.; Sugget, A. Int J Peptide Res 1981, 17, 353-364.
55. Tsong, T. Y. Biochemistry 1973, 12, 2209-2214.
56. Baello, B. I.; Pancoska, P.; Keiderling, T. A. Anal Biochem 1997, 250, 212-221.
57. Nafie, L. A.; Pezolet, M.; Peticolas, W. L. Chem Phys Lett 1973, 20, 563-568.
58. Keiderling, T. A.; Silva, R. A. G. D.; Yoder, G.; Dukor, R. K. Bioorg Med Chem 1999, 7, 133-141.
59. Dukor, R. K.; Keiderling, T. A. Biopolymers 1991, 31, 1747-1761.
60. Silva, R. A. G. D.; Kubelka, J.; Decatur, S. M.; Bour, P.; Keiderling, T. A. Proc Natl Acad Sci USA 2000, 97, 8318-8323.
61. Diaz-Quintana, A.; Navarro, J. A.; Hervas, M.; Molina-Heredia, F. P.; De la Cerda, B.; De la Rosa, M. A. Photosynth Res 2003, 75, 97-110.
62. Grealis, C.; Magner, E. Langmuir 2003, 19, 1282-1286.
63. Mihara, M.; Erster, S.; Zaika, A.; Petrenko, O.; Chittenden, T.; Pancoska, P.; Moll, U. M. Mol Cell 2003, 11, 577-590.
64. Yeh, S. R.; Rousseau, D. L. J Biol Chem 1999, 274, 17853-17859.
65. Colon, W.; Wakem, L. P.; Sherman, F.; Roder, H. Biochemistry 1997, 36, 12535-12541.
66. Xu, Q.; Keiderling, T. A., to be submitted.
67. Keiderling, T. A. Curr Opin Chem Biol 2002, 6, 682-688.
68. Dong, A.; Randolph, T. W.; Carpenter, J. F. J Biol Chem 2000, 275, 27689-27693.
69. Sreerama, N.; Woody, R. W. J Mol Biol 1994, 242, 497-507.
70. Fabian, H.; Reinstadler, D.; Zhang, M.; Vogel, H.; Naumann, D.; Mantsch, H. H. In Spectroscopy of Biological Molecules; Merlin, J. C., Turrell, S., Huvenne, J. P., Eds.; Kluwer Academic Publishers: Dordrecht, 1995.
71. Keiderling, T. A.; Pancoska, P. In Biomolecular Spectroscopy, Part B; Hester, R. E., Clarke, R. J. H., Eds.; Wiley: Chichester, 1993; pp 267-315.
72. Pfeil, W.; Bychkova, V. E.; Ptitsyn, O. B. FEBS Lett 1986, 198, 287-291.