Construction of a BAC contig map of chromosome 16q by two-dimensional overgo hybridization

Genome Research

Volumn 10, Issue 5, 2000, Pages 714-721

  Han, Cliff S ^a   Sutherland, Robert D ^a   Jewett, Phillip B ^a   Campbell, Mary L ^a   Meincke, Linda J ^a   Tesmer, Judy G ^a   Mundt, Mark O ^a   Fawcett, John J ^a   Kim, Ung Jin ^b   Deaven, Larry L ^a   Doggett, Norman A ^a  

^a LOS ALAMOS NATIONAL LABORATORY   (United States)

^b CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG; DNA FRAGMENT; OLIGONUCLEOTIDE;

ARTICLE; CHROMOSOME 16Q; CHROMOSOME MAP; CONTROLLED STUDY; COSMID; DNA FINGERPRINTING; DNA HYBRIDIZATION; DNA PROBE; EUCHROMATIN; EXPRESSED SEQUENCE TAG; GENE CONSTRUCT; GENE LIBRARY; GENE SEQUENCE; GENE TARGETING; HUMAN; HYBRID CELL; MOLECULAR CLONING; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; YEAST ARTIFICIAL CHROMOSOME;

CHROMOSOMES, BACTERIAL; CHROMOSOMES, HUMAN, PAIR 16; CONTIG MAPPING; HUMANS; NUCLEIC ACID HYBRIDIZATION; REPRODUCIBILITY OF RESULTS; RESTRICTION MAPPING; SEQUENCE TAGGED SITES;

ENICOSTEMA;

EID: 19244384655     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.10.5.714     Document Type: Article

References (17)

1. Botstein, D., C. Cantor, J. Carbonell, A. Carrano, T. Caskey, F. Collins, U. Francke, E. Lander, L. Lerman, R. Moyzis et al. 1990. In The Human Genome Project: The first five years FY 1991-1995. DOE/ER-0452P, NIH 90-1590.
2. Bruno, W.J., E. Knill, D.J. Balding, D.C. Bruce, N.A. Doggett, W.W. Sawhill, R.L. Stallings, C.C. Whittaker, and D.C. Torney. 1995. Efficient pooling designs for library screening. Genomics 26: 21-30.
3. Buckler, A.J., D.D. Chang, S.L. Graw, J.D. Brook, D.A. Haber, P.A. Sharp, and D.E. Housman. 1991. Exon amplification: A strategy to isolate mammalian genes based on RNA splicing. Proc. Natl. Acad. Sci. 88: 4005-4009.
4. Burke, D.T., G.F. Carle, and M.V. Olson. 1987. Cloning of large segments of exogenous DNA into yeast by means of artificial chromosome vectors. Science 236: 806-812.
5. Cao, Y., H.L. Kang, X. Xu, M. Wang, S.H. Dho, J. RyulHuh, B.-J. Lee, F. Kalush, , D. Bocska, Y. Ding et al. 1999. A 12 Mbp complete coverage BAC contig map in human chromosome 16p13.1-11.2.Genome Res. 9: 763-774.
6. Chumakov, I.M., P. Rigault, I. Le Gall, C. Bellanné-Chantelot, A. Billault, S. Guillou, P. Soularue, G. Guasconi, E. Poullier, I. Gros et al. 1995. A YAC contig map of the human genome. Nature (Suppl.) 377: 175-297.
7. Cohen, D., I. Chumakov, and J. Weissenbach. 1993. A first-generation physical map of the human genome. Nature 366: 698-701.
8. Doggett, N.A., L.A. Goodwin, J.G. Tesmer, L.J. Meincke, D.C. Bruce, L.M Clark, M.R. Altherr, A.A. Ford., H.C Chi, B.L Marrone. 1995. An integrated physical map of human chromosome 16. Nature (Suppl.) 37: 335-365.
9. Green, E.D. and M.V Olson. 1990. Systematic screening of yeast artificial-chromosome libraries by use of the polymerase chain-reaction. Proc. Natl. Acad Sci. 87: 1213-1217.
10. Green, E.D., H.C. Riethman, J.E. Dutchik, and M.V. Olson. 1991. Detection and characterization of chimeric yeast artificial-chromosome clones. Genomics 11: 658-669.
11. Kim, U.J., B.W. Birren, T. Slepak, V. Mancino, C. Boysen, H.I., Kang, M.I. Simon, and H. Shizuya. 1996. Construction and characterization of a human bacterial artificial chromosome library. Genomics 34: 213-218.
12. Osoegawa, K., P.Y. Woon, B. Zhao, E. Frengen, M. Tateno, J.J. Catanese, and P.J. de Jong. 1998. An improved approach for construction of bacterial artificial chromosome libraries. Genomics 52: 1-8.
13. Ross, M.T., S. LaBrie, J. McPherson, and V.P. Stanton, Jr. 1999. Screening large-insert libraries by hybridization. In Current protocols in human genetics (ed. Ann Boyl), pp. 5.6.1-5.6.52. Wiley, New York, NY.
14. Sambrook, J., E.F. Fritsch, and T. Maniatis. 1989. Molecular cloning: A laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
15. Selleri, L., J.H. Eubanks, M. Giovannini, G.G. Hermanson, A. Romo. M. Djabali, S. Maurer, D.L. Mcelligott, M.W. Smith, and G.A. Evans. 1992. Detection and characterization of "chimeric" yeast artificial chromosome clones by fluorescent in situ suppression hybridization. Genomics 14: 536-541.
16. Shizuya, H., B. Birren, U.J. Kim, V. Mancino, T. Slepak, Y. Tachiiri, and M. Simon, 1992. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc. Natl. Acad. Sci. 89: 8794-8797.
17. Soderlund, C., and C. Burks. 1994. GRAM and GENFRAGII: Solving and testing the single-digest, partially ordered restriction map problem. Comput. Applic. Biosci. 10: 349-358.