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Volumn 25, Issue 4, 2005, Pages 842-847

Application of polymerase chain reaction -denaturing gradient gel electrophoresis (PCR-DGGE) to the analysis of changes of microbial ecological communities in activated sludge systems

Author keywords

Activated sludge system; Community structure; PCR DGGE

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 18944369339     PISSN: 10000933     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (15)

References (26)
  • 1
    • 0031959006 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    • Antonie Van LeeuwenhoekInt
    • Muyzer G, and Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van LeeuwenhoekInt. J. Gen. Mol. Microbiol., 1998, 73:127-141.
    • (1998) J. Gen. Mol. Microbiol. , vol.73 , pp. 127-141
    • Muyzer, G.1    Smalla, K.2
  • 2
    • 0041326415 scopus 로고    scopus 로고
    • A new approach to determine the genetic diversity of viable and active bacteria in aquatic ecosystems
    • Bernard L, Courties C, Duperray C, et al. A new approach to determine the genetic diversity of viable and active bacteria in aquatic ecosystems. Cytometry, 2001,43, 314-321.
    • (2001) Cytometry , vol.43 , pp. 314-321
    • Bernard, L.1    Courties, C.2    Duperray, C.3
  • 3
    • 17544390961 scopus 로고    scopus 로고
    • Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: Comparison by microscopy and denaturing gradient gel electrophoresis
    • Casamayor E O, Schafer H, Baneras L, et al. Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: comparison by microscopy and denaturing gradient gel electrophoresis. Appl. Environ. Microbiol., 2000, 66, 499-508.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 499-508
    • Casamayor, E.O.1    Schafer, H.2    Baneras, L.3
  • 4
    • 0030063913 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis of 16SrRNA-defined populations inhabiting a hot spring microbial mat community
    • Ferris M J, Muyzer G, and Ward D M. Denaturing gradient gel electrophoresis of 16SrRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol., 1996,62,340-346.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 340-346
    • Ferris, M.J.1    Muyzer, G.2    Ward, D.M.3
  • 5
    • 0034056895 scopus 로고    scopus 로고
    • Monitoring impact of in situ biostimulation treatment on groundwater bacterial community by DGGE
    • Iwamoto T, Nakamura K, Suzuki Y, et al. Monitoring impact of in situ biostimulation treatment on groundwater bacterial community by DGGE. FEMS Microbiol Col., 2000, 32, 2007-141.
    • (2000) FEMS Microbiol Col. , vol.32 , pp. 2007-2141
    • Iwamoto, T.1    Nakamura, K.2    Suzuki, Y.3
  • 6
    • 0032985537 scopus 로고    scopus 로고
    • Identification of a novel group of bacterial in sludge from a deteriorated biological phosphorus removal reactor
    • Nielsen A T, W Liu T, Filipe C, et al. Identification of a novel group of bacterial in sludge from a deteriorated biological phosphorus removal reactor. Appl. Environ. Microbiol., 1999,65, 1251-1258.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1251-1258
    • Nielsen, A.T.1    W Liu, T.2    Filipe, C.3
  • 7
    • 0031831891 scopus 로고    scopus 로고
    • Microbiological and molecular biological methods for monitoring microbial inoculants and their effects in the sea environment
    • Van Elsas J D, Duarte G F, Rosado A S, et al. Microbiological and molecular biological methods for monitoring microbial inoculants and their effects in the sea environment. J. Microbiol. Method., 1998,32, 133-154.
    • (1998) J. Microbiol. Method. , vol.32 , pp. 133-154
    • Van Elsas, J.D.1    Duarte, G.F.2    Rosado, A.S.3
  • 8
    • 0031803542 scopus 로고    scopus 로고
    • The comparison of the diversity of activated sludge plants
    • Curtis T P, and Craine N G. The comparison of the diversity of activated sludge plants. Water Sci. Techol., 1998,37, 71-78.
    • (1998) Water Sci. Techol. , vol.37 , pp. 71-78
    • Curtis, T.P.1    Craine, N.G.2
  • 9
    • 0032938864 scopus 로고    scopus 로고
    • Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community
    • Eichner C A, Erb R W, Timmis K N, Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community. Appl. Environ. Microbiol., 1999,65, 102-109.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 102-109
    • Eichner, C.A.1    Erb, R.W.2    Timmis, K.N.3
  • 10
    • 0030036446 scopus 로고    scopus 로고
    • Phylogenetic composition of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments
    • Murray A E, Hollibaugh J T, Orrego C. Phylogenetic composition of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments. Appl. Environ. Microbiol., 1996,62, 2676-2680.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2676-2680
    • Murray, A.E.1    Hollibaugh, J.T.2    Orrego, C.3
  • 12
    • 0030666834 scopus 로고    scopus 로고
    • Genetic diversity and expression of the (NiFe) hydrogenase large subunit gene of Desulfovibrio spp in environmental samples
    • Wawer C, Jetten M, Muyzer G. Genetic diversity and expression of the (NiFe) hydrogenase large subunit gene of Desulfovibrio spp in environmental samples. Appl. Environ. Microbiol., 1997,63, 4360-4369.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4360-4369
    • Wawer, C.1    Jetten, M.2    Muyzer, G.3
  • 13
    • 0029805854 scopus 로고    scopus 로고
    • Direct ribosomal isolation from soil to extract bacterial rRNA for community analysis
    • Felske A, Engelen B, Nubel U, et al. Direct ribosomal isolation from soil to extract bacterial rRNA for community analysis. Appl. Environ. Microbiol., 1996,62, 4162-4167.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4162-4167
    • Felske, A.1    Engelen, B.2    Nubel, U.3
  • 14
    • 0031465029 scopus 로고    scopus 로고
    • Biodiversity within hot spring microbial mat communities molecular monitoring of enrichment cultures
    • Ward DM, Santegoeds CM, Nord SC, et al. Biodiversity within hot spring microbial mat communities molecular monitoring of enrichment cultures. Antonie Van Leeuwenhoek, 1996, 71:143-50.
    • (1996) Antonie Van Leeuwenhoek , vol.71 , pp. 143-150
    • Ward, D.M.1    Santegoeds, C.M.2    Nord, S.C.3
  • 15
    • 0036202170 scopus 로고    scopus 로고
    • Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants
    • Nico Boon, Wim De Windt, Willy Verstraete, et al. Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants. FEMS Microbiology Ecology, 2002,39, 101-112.
    • (2002) FEMS Microbiology Ecology , vol.39 , pp. 101-112
    • Boon, N.1    De Windt, W.2    Verstraete, W.3
  • 16
    • 0037318078 scopus 로고    scopus 로고
    • Bacterial population changes in a membrane bioreactor for gray-water treatment monitored by denaturing gradient gel electrophoresis analysis of 16S rRNA gene fragments
    • David M, Stamper, Marianne Walch, et al. Bacterial population changes in a membrane bioreactor for gray-water treatment monitored by denaturing gradient gel electrophoresis analysis of 16S rRNA gene fragments. Appl. Environ. Microbiol., 2003,69, 852-860.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 852-860
    • David, M.1    Stamper2    Walch, M.3
  • 17
    • 0036131832 scopus 로고    scopus 로고
    • Stability of the bacterial communities supported by a seven-stage biological process treating pharmaceutical wastewater as revealed by PCR-DGGE
    • Timothy M, LaPara, Cindy H, et al. Stability of the bacterial communities supported by a seven-stage biological process treating pharmaceutical wastewater as revealed by PCR-DGGE. Water Research, 2002,36, 638-646.
    • (2002) Water Research , vol.36 , pp. 638-646
    • Timothy, M.1    LaPara2    Cindy, H.3
  • 18
    • 0032703237 scopus 로고    scopus 로고
    • Evaluation and Optimization of DNA Extraction and Purification Procedures for Soil and Sediment Samples
    • Miller N, Bryant J E, Madsen E L, et al. Evaluation and Optimization of DNA Extraction and Purification Procedures for Soil and Sediment Samples. Appl. Envir. Microbiol., 1999,65: 4715-4724.
    • (1999) Appl. Envir. Microbiol. , vol.65 , pp. 4715-4724
    • Miller, N.1    Bryant, J.E.2    Madsen, E.L.3
  • 19
    • 0031927989 scopus 로고    scopus 로고
    • Genetic diversity of nifH gene sequences in Paenibacillus azotofixans strain and soil samples analyzed by denaturing gradient gel electrophoresis of PCR-amplified gene fragments
    • Rosado A S, Duarte G R, Seldin L, et al. Genetic diversity of nifH gene sequences in Paenibacillus azotofixans strain and soil samples analyzed by denaturing gradient gel electrophoresis of PCR-amplified gene fragments. Appl. Environ. Microbiol., 1998,64, 2770-2779.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2770-2779
    • Rosado, A.S.1    Duarte, G.R.2    Seldin, L.3
  • 20
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Gerard Muzer, Ellen C, De Wall, et al. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol., 1993,59 (3), 695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , Issue.3 , pp. 695-700
    • Muzer, G.1    Ellen, C.2    De Wall3
  • 21
    • 0032938864 scopus 로고    scopus 로고
    • Thermal gradient gel electrophoresis analysis of bio-protection from pollutant shocks in the activated sludge microbial community
    • Eichner C A, Erb R W, Timmis K N, et al. Thermal gradient gel electrophoresis analysis of bio-protection from pollutant shocks in the activated sludge microbial community. Appl. Environ. Microbiol., 1999,65,102-109.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 102-109
    • Eichner, C.A.1    Erb, R.W.2    Timmis, K.N.3
  • 22
    • 0033754285 scopus 로고    scopus 로고
    • PCR bias in ecological analysis: A case study for quantitative Taq nuclease assays in analyses of microbial communities
    • Becker S, Boger P, Oehlmann R, et al. PCR bias in ecological analysis: a case study for quantitative Taq nuclease assays in analyses of microbial communities. Appl. Environ. Microbiol., 2000,66, 4945-4953.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4945-4953
    • Becker, S.1    Boger, P.2    Oehlmann, R.3
  • 23
    • 0029032318 scopus 로고
    • Effect of genome size and copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
    • Farrelly V, Rainey F A, and Stackebrandt E. Effect of genome size and copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Eviron. Microbiol., 1995,61,2798-2801.
    • (1995) Appl. Eviron. Microbiol. , vol.61 , pp. 2798-2801
    • Farrelly, V.1    Rainey, F.A.2    Stackebrandt, E.3
  • 24
    • 0031711754 scopus 로고    scopus 로고
    • Bias in template-to -product ratios in multi-template PCR
    • Polz M F, and Cavanaugh C M. Bias in template-to -product ratios in multi-template PCR. Appl. Environ. Microbiol., 1998,64,3724-3730.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3724-3730
    • Polz, M.F.1    Cavanaugh, C.M.2
  • 25
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixture of 16S rRNA genes by PCR
    • Suzuki m t, and Giovannoni S J. Bias caused by template annealing in the amplification of mixture of 16S rRNA genes by PCR. Appl. Environ. Microbiol., 1996,62,625-630.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 26
    • 0032824027 scopus 로고    scopus 로고
    • Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis
    • Gelsomino A, Keijzer-Wolters AC, Cacco G, et al. Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis. J. Microbiol. Methods, 1999,38 (1-2), 1-15.
    • (1999) J. Microbiol. Methods , vol.38 , Issue.1-2 , pp. 1-15
    • Gelsomino, A.1    Keijzer-Wolters, A.C.2    Cacco, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.