-
1
-
-
0033031386
-
E-CELL: Software environment for whole cell simulation
-
Tomita, M., Hashimoto, K., Takahashi, K., Shimizu, T., Matsuzaki, Y., Miyoshi, F., Saito, K., Tanida, S., Yugi, K., Venter, J.C. and Hutchison, C., "E-CELL: Software environment for whole cell simulation, " Bioinformatics Vol. 15, No. 1, 1999.
-
(1999)
Bioinformatics
, vol.15
, Issue.1
-
-
Tomita, M.1
Hashimoto, K.2
Takahashi, K.3
Shimizu, T.4
Matsuzaki, Y.5
Miyoshi, F.6
Saito, K.7
Tanida, S.8
Yugi, K.9
Venter, J.C.10
Hutchison, C.11
-
2
-
-
0342551377
-
GEISHA SYSTEM: An environment for simulating protein interaction
-
Takagi, T.(ed) Universal Academy Press, Tokyo
-
Arita, M., Hagiya, M. and Shiratori, T., "GEISHA SYSTEM: An Environment for Simulating Protein Interaction, " in Takagi, T.(ed), Proceedings, Genome Informatics Workshop 1994. Universal Academy Press, Tokyo, pp. 81-89, 1994.
-
(1994)
Proceedings, Genome Informatics Workshop 1994
, pp. 81-89
-
-
Arita, M.1
Hagiya, M.2
Shiratori, T.3
-
3
-
-
0020740241
-
Analysis of numerical methods for computer simulation of kinetic processes: Development of KINSIM-a flexible, portable system
-
Barshop, B. A , Wrenn, R. F. and Frieden, C., "Analysis of numerical methods for computer simulation of kinetic processes: development of KINSIM-a flexible, portable system, " Anal Biochem, 130, pp. 134-145, 1983.
-
(1983)
Anal Biochem
, vol.130
, pp. 134-145
-
-
Barshop, B.A.1
Wrenn, R.F.2
Frieden, C.3
-
4
-
-
0026023024
-
MetaModel: A program for modeling and control analysis of metabolic pathways on the IBM PC and compatibles
-
Cornish-Bowden, A. and Hofmeyr, J. H., "MetaModel: a program for modeling and control analysis of metabolic pathways on the IBM PC and compatibles, " Comput. Appl. Biosci., 7, pp. 89-93, 1991.
-
(1991)
Comput. Appl. Biosci.
, vol.7
, pp. 89-93
-
-
Cornish-Bowden, A.1
Hofmeyr, J.H.2
-
5
-
-
0030792287
-
New PC versions of the kinetic-simulation and fitting programs, KINSIM and FITSIM
-
Dang Q. and Frieden C., "New PC versions of the kinetic-simulation and fitting programs, KINSIM and FITSIM, " Trends. Biochem. Sci., 22 (8), p. 317, 1997.
-
(1997)
Trends. Biochem. Sci.
, vol.22
, Issue.8
, pp. 317
-
-
Dang, Q.1
Frieden, C.2
-
6
-
-
0029073341
-
MIST: A user-friendly metabolic simulator
-
Ehlde, M. and Zacchi, G., "MIST: a user-friendly metabolic simulator, " Comput. Appl. Biosci., 11, pp. 201-207, 1995.
-
(1995)
Comput. Appl. Biosci.
, vol.11
, pp. 201-207
-
-
Ehlde, M.1
Zacchi, G.2
-
7
-
-
0008685567
-
Knowledge-based simulation of DNA metabolism: Prediction of action and envisionment of pathways
-
Hunter, L.(ed) AAAI Press The MIT Press, California Massachusetts
-
Galper, A. R., Brutlag, D. L. and Millis, D. H., "Knowledge-Based Simulation of DNA Metabolism: Prediction of Action and Envisionment of Pathways, " in Hunter, L.(ed), Artificial Intelligence and Molecular Biology, AAAI Press The MIT Press, California Massachusetts, pp. 429-436, 1993.
-
(1993)
Artificial Intelligence and Molecular Biology
, pp. 429-436
-
-
Galper, A.R.1
Brutlag, D.L.2
Millis, D.H.3
-
8
-
-
0003067660
-
Toward pathway engineering: A new database of genetic and molecular pathways
-
Kanehisa, M., "Toward pathway engineering: a new database of genetic and molecular pathways, " Sci Technol. Jap., 59, pp. 34-38, 1996.
-
(1996)
Sci Technol. Jap.
, vol.59
, pp. 34-38
-
-
Kanehisa, M.1
-
9
-
-
0003149991
-
A qualitative biochemistry and its application to the regulation of the tryptophan operon
-
Hunter, L.(ed) AAAI Press The MIT Press, California Massachusetts
-
Karp, P. D., "A Qualitative Biochemistry and Its Application to the Regulation of the Tryptophan Operon, " in Hunter, L.(ed), Artificial Intelligence and Molecular Biology. AAAI Press The MIT Press, California Massachusetts, pp. 289-324, 1993.
-
(1993)
Artificial Intelligence and Molecular Biology
, pp. 289-324
-
-
Karp, P.D.1
-
10
-
-
0029867572
-
EcoCyc: Encyclopedia of E. coli genes and metabolism
-
Karp, P. D., Riley, M., Paley, S. M. and Pelligrini-Toole, A., "EcoCyc: Encyclopedia of E. coli Genes and Metabolism, " Nucl. Acids Res., 24, pp. 32-40, 1996.
-
(1996)
Nucl. Acids Res.
, vol.24
, pp. 32-40
-
-
Karp, P.D.1
Riley, M.2
Paley, S.M.3
Pelligrini-Toole, A.4
-
12
-
-
0029028963
-
Circuit simulation of genetic networks
-
McAdams, H. H. and Shapiro, L., "Circuit Simulation of Genetic Networks, " Science, 269, pp. 650-656, 1995.
-
(1995)
Science
, vol.269
, pp. 650-656
-
-
McAdams, H.H.1
Shapiro, L.2
-
13
-
-
0027370376
-
GEPASI: A software package for modeling the dynamics, steady states and control of biochemical and other systems
-
Mendes, P., "GEPASI: a software package for modeling the dynamics, steady states and control of biochemical and other systems, " Comput. Appl. Biosci., 9, pp. 563-571, 1993.
-
(1993)
Comput. Appl. Biosci.
, vol.9
, pp. 563-571
-
-
Mendes, P.1
-
14
-
-
0030921160
-
Biochemistry by numbers: Simulation of biochemical pathways with Gepasi 3
-
Mendes, P., "Biochemistry by numbers: simulation of biochemical pathways with Gepasi 3, " Trends. Biochem. Sci., 22, pp. 361-363, 1997.
-
(1997)
Trends. Biochem. Sci.
, vol.22
, pp. 361-363
-
-
Mendes, P.1
-
15
-
-
0021760050
-
Knowledge-based simulation of genetic regulation in bacteriophage lambda
-
Meyers, S. and Friedland, P., "Knowledge-based simulation of genetic regulation in bacteriophage lambda, " Nucl. Acids Res., 12, pp. 1-9, 1984.
-
(1984)
Nucl. Acids Res.
, vol.12
, pp. 1-9
-
-
Meyers, S.1
Friedland, P.2
-
16
-
-
0028928501
-
Quantitative analysis of a molecular model of mitotic control in fission yeast
-
Novak, B. and Tyson, J. J., "Quantitative Analysis of a Molecular Model of Mitotic Control in Fission Yeast, " J. Theor. Biol., 173, pp. 283-305, 1995.
-
(1995)
J. Theor. Biol.
, vol.173
, pp. 283-305
-
-
Novak, B.1
Tyson, J.J.2
-
17
-
-
0027178664
-
SCAMP: A general-purpose simulator and metabolic control analysis program
-
Sauro, H. M., "SCAMP: a general-purpose simulator and metabolic control analysis program, "Comput. Appl. Biosci., 9, pp. 441-450, 1993.
-
(1993)
Comput. Appl. Biosci.
, vol.9
, pp. 441-450
-
-
Sauro, H.M.1
-
18
-
-
0025826876
-
Modeling the cell division cycle: cdc2 and cyclin interactions
-
Tyson, J. J., "Modeling the cell division cycle: cdc2 and cyclin interactions, " Proc. Natl. Acad. Sci. USA, 88, pp. 7328-7332, 1991.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 7328-7332
-
-
Tyson, J.J.1
-
19
-
-
0024842144
-
Metabolic dynamics in the human red cell, Part I-A comprehensive kinetic model
-
Dec 19
-
Joshi A, et al. Metabolic dynamics in the human red cell, Part I-A comprehensive kinetic model. Part II-Interactions with the environment. Part III-Metabolic reaction rates. Part IV-Data prediction and some model computations. J Theor Biol. 1989 Dec 19, 141 (4), pp. 515-528. 1989 Dec 19, 141 (4), pp. 529-545. 1990 Jan 9, 142 (1), pp. 41-68. 1990 Jan 9, 142 (1), pp. 69-85.
-
(1989)
J Theor Biol.
, vol.141
, Issue.4
, pp. 515-528
-
-
Joshi, A.1
-
20
-
-
0024799182
-
Metabolic dynamics in the human red cell, Part II-Interactions with the environment
-
Dec 19
-
Joshi A, et al. Metabolic dynamics in the human red cell, Part I-A comprehensive kinetic model. Part II-Interactions with the environment. Part III-Metabolic reaction rates. Part IV-Data prediction and some model computations. J Theor Biol. 1989 Dec 19, 141 (4), pp. 515-528. 1989 Dec 19, 141 (4), pp. 529-545. 1990 Jan 9, 142 (1), pp. 41-68. 1990 Jan 9, 142 (1), pp. 69-85.
-
(1989)
J Theor Biol.
, vol.141
, Issue.4
, pp. 529-545
-
-
-
21
-
-
0025095641
-
Metabolic dynamics in the human red cell, Part III-Metabolic reaction rates
-
Jan 9
-
Joshi A, et al. Metabolic dynamics in the human red cell, Part I-A comprehensive kinetic model. Part II-Interactions with the environment. Part III-Metabolic reaction rates. Part IV-Data prediction and some model computations. J Theor Biol. 1989 Dec 19, 141 (4), pp. 515-528. 1989 Dec 19, 141 (4), pp. 529-545. 1990 Jan 9, 142 (1), pp. 41-68. 1990 Jan 9, 142 (1), pp. 69-85.
-
(1990)
J Theor Biol.
, vol.142
, Issue.1
, pp. 41-68
-
-
-
22
-
-
0025166450
-
Metabolic dynamics in the human red cell, Part IV-Data prediction and some model computations
-
Jan 9
-
Joshi A, et al. Metabolic dynamics in the human red cell, Part I-A comprehensive kinetic model. Part II-Interactions with the environment. Part III-Metabolic reaction rates. Part IV-Data prediction and some model computations. J Theor Biol. 1989 Dec 19, 141 (4), pp. 515-528. 1989 Dec 19, 141 (4), pp. 529-545. 1990 Jan 9, 142 (1), pp. 41-68. 1990 Jan 9, 142 (1), pp. 69-85.
-
(1990)
J Theor Biol.
, vol.142
, Issue.1
, pp. 69-85
-
-
-
23
-
-
0024835379
-
Computer model of human erythrocyte metabolism
-
discussion
-
Palsson BO, et al., "Computer model of human erythrocyte metabolism, " Prog Clin Biol Res., 319, pp. 133-150, discussion, pp. 151-154, 1989.
-
(1989)
Prog Clin Biol Res.
, vol.319
, pp. 133-150
-
-
Palsson, B.O.1
-
24
-
-
0029902666
-
Model assessment and refinement using strategies from biochemical systems theory: Application to metabolism in human red blood cells
-
Ni TC, et al., "Model assessment and refinement using strategies from biochemical systems theory: application to metabolism in human red blood cells, " J Theor Biol., Apr 21, 179(4), pp. 329-368, 1996.
-
(1996)
J Theor Biol., Apr 21
, vol.179
, Issue.4
, pp. 329-368
-
-
Ni, T.C.1
-
25
-
-
0029876941
-
Application of biochemical systems theory to metabolism in human red blood cells. Signal propagation and accuracy of representation
-
Ni TC, et al., "Application of biochemical systems theory to metabolism in human red blood cells. Signal propagation and accuracy of representation, " J Biol Chem., Apr 5, 271 (14), pp. 7927-7941, 1996.
-
(1996)
J Biol Chem., Apr 5
, vol.271
, Issue.14
, pp. 7927-7941
-
-
Ni, T.C.1
-
26
-
-
0026910605
-
A Macintosh software package for simulation of human red blood cell metabolism
-
Lee ID, et al., "A Macintosh software package for simulation of human red blood cell metabolism, " Comput Methods Programs Biomed, Aug, 38(4), pp. 195-226, 1992.
-
(1992)
Comput Methods Programs Biomed, Aug
, vol.38
, Issue.4
, pp. 195-226
-
-
Lee, I.D.1
-
27
-
-
0025687613
-
A comprehensive model of human erythrocyte metabolism: Extensions to include pH effects
-
Lee ID, et al., "A comprehensive model of human erythrocyte metabolism: extensions to include pH effects, " Biomed Biochem, 49(8-9), pp. 771-789, 1990.
-
(1990)
Biomed Biochem
, vol.49
, Issue.8-9
, pp. 771-789
-
-
Lee, I.D.1
-
28
-
-
0027231876
-
Computer simulation of the phosphorylation cascade controlling bacterial chemotaxis
-
Bray, D., Bourret, R. B. and Simon, M. I., "Computer Simulation of the Phosphorylation Cascade Controlling Bacterial Chemotaxis, " Molecular Biology of the Cell, 4, pp. 469-482, 1993.
-
(1993)
Molecular Biology of the Cell
, vol.4
, pp. 469-482
-
-
Bray, D.1
Bourret, R.B.2
Simon, M.I.3
-
29
-
-
0028853660
-
Computer analysis of the binding reactions leading to a transmembrane receptor-linked multiprotein complex involved in bacterial chemotaxis
-
Bray, D. and Bourret, R. B., "Computer analysis of the binding reactions leading to a transmembrane receptor-linked multiprotein complex involved in bacterial chemotaxis, " Molecular Biology of the Cell, 6, pp. 1367-1380, 1995.
-
(1995)
Molecular Biology of the Cell
, vol.6
, pp. 1367-1380
-
-
Bray, D.1
Bourret, R.B.2
|