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Volumn 44, Issue 2, 2005, Pages 212-221

Molecular phylogeny of Bangiales (Rhodophyta) based on small subunit rDNA sequencing: Emphasis on Brazilian Porphyra species

Author keywords

[No Author keywords available]

Indexed keywords

ACANTHOPHORA; ALGAE; BANGIA; BANGIALES; BANGIOPSIS; PORPHYRA; PORPHYRA CAPENSIS; PORPHYRA SP.; PORPHYRA SPIRALIS; PORPHYRA SUBORBICULATA; PORPHYRIDIALES; RHODOPHYTA;

EID: 18844382380     PISSN: 00318884     EISSN: None     Source Type: Journal    
DOI: 10.2216/0031-8884(2005)44[212:MPOBRB]2.0.CO;2     Document Type: Article
Times cited : (51)

References (59)
  • 3
    • 0036077140 scopus 로고    scopus 로고
    • Phylogeny and systematics of the marine algal family Gracilariaceae (Gracilariales, Rhodophyta) based on small subunit rDNA and ITS sequences of Atlantic and Pacific species
    • BELLORIN A.M., OLIVEIRA M.C. & OLIVEIRA E.C. 2002. Phylogeny and systematics of the marine algal family Gracilariaceae (Gracilariales, Rhodophyta) based on small subunit rDNA and ITS sequences of Atlantic and Pacific species. Journal of Phycology 38: 551-563.
    • (2002) Journal of Phycology , vol.38 , pp. 551-563
    • Bellorin, A.M.1    Oliveira, M.C.2    Oliveira, E.C.3
  • 4
    • 0033637722 scopus 로고    scopus 로고
    • The SSU rDNA coding region of a filose amoeba contains a group I intron lacking the universally conserved G at the 3′-terminus
    • BHATTACHARYA D. & OLIVEIRA M.C. 2000. The SSU rDNA coding region of a filose amoeba contains a group I intron lacking the universally conserved G at the 3′-terminus. The Journal of Eukaryotic Microbiology 47: 585-589.
    • (2000) The Journal of Eukaryotic Microbiology , vol.47 , pp. 585-589
    • Bhattacharya, D.1    Oliveira, M.C.2
  • 6
    • 0029792519 scopus 로고    scopus 로고
    • Nuclear-encoded rDNA group I intron: Origin and phylogenetic relationship of insertion site lineages in the green algae
    • BHATTACHARYA D., FRIEDL T. & DAMBERGER S. 1996. Nuclear-encoded rDNA group I intron: origin and phylogenetic relationship of insertion site lineages in the green algae. Molecular Biology and Evolution 13: 978-989.
    • (1996) Molecular Biology and Evolution , vol.13 , pp. 978-989
    • Bhattacharya, D.1    Friedl, T.2    Damberger, S.3
  • 7
    • 0001378238 scopus 로고
    • Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences
    • BIRD C.J., RICE E.L., MURPHY C.A. & RAGAN M.A. 1992. Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences. Phycologia 31: 510-522.
    • (1992) Phycologia , vol.31 , pp. 510-522
    • Bird, C.J.1    Rice, E.L.2    Murphy, C.A.3    Ragan, M.A.4
  • 8
    • 0000394884 scopus 로고    scopus 로고
    • Molecular and morphological characters distinguishing two Porphyra species (Rhodophyta: Bangiophycidae)
    • BRODIE J., HAYES P.K., BARKER G.L. & IRVINE L.M. 1996. Molecular and morphological characters distinguishing two Porphyra species (Rhodophyta: Bangiophycidae). European Journal of Phycology 31: 303-308.
    • (1996) European Journal of Phycology , vol.31 , pp. 303-308
    • Brodie, J.1    Hayes, P.K.2    Barker, G.L.3    Irvine, L.M.4
  • 9
    • 0032443918 scopus 로고    scopus 로고
    • A reappraisal of Porphyra and Bangia (Bangiophycidae, Rhodophyta) in the Northeast Atlantic based on the rbcL-rbcS intergenic spacer
    • BRODIE J., HAYES P.K., BARKER G.L., IRVINE L.M. & BARTSCH I. 1998. A reappraisal of Porphyra and Bangia (Bangiophycidae, Rhodophyta) in the Northeast Atlantic based on the rbcL-rbcS intergenic spacer. Journal of Phycology 34: 1069-1074.
    • (1998) Journal of Phycology , vol.34 , pp. 1069-1074
    • Brodie, J.1    Hayes, P.K.2    Barker, G.L.3    Irvine, L.M.4    Bartsch, I.5
  • 11
    • 18844363609 scopus 로고    scopus 로고
    • How much is enough? SSU variation as a signal of speciation in New Zealand Porphyra
    • BROOM J.E., NELSON W.A., MUTCH J., FARR T.J. & JONES W.A. 2001. How much is enough? SSU variation as a signal of speciation in New Zealand Porphyra. Phycologia 40, supplement: 64.
    • (2001) Phycologia , vol.40 , Issue.SUPPL. , pp. 64
    • Broom, J.E.1    Nelson, W.A.2    Mutch, J.3    Farr, T.J.4    Jones, W.A.5
  • 12
    • 0036106780 scopus 로고    scopus 로고
    • A reassessment of the taxonomic status of Porphyra suborbiculata, Porphyra carolinensis and Porphyra lilliputiana (Bangiales, Rhodophyta) based on molecular and morphological data
    • BROOM J.E., NELSON W.A., YARISH C., JONES W.A., AGUILAR ROSAS R. & AGUILAR ROSAS L.E. 2002. A reassessment of the taxonomic status of Porphyra suborbiculata, Porphyra carolinensis and Porphyra lilliputiana (Bangiales, Rhodophyta) based on molecular and morphological data. European Journal of Phycology 37: 227-235.
    • (2002) European Journal of Phycology , vol.37 , pp. 227-235
    • Broom, J.E.1    Nelson, W.A.2    Yarish, C.3    Jones, W.A.4    Aguilar Rosas, R.5    Aguilar Rosas, L.E.6
  • 13
    • 0024379859 scopus 로고
    • Simultaneous editing of multiple nuclei acid and protein sequences with ESEE
    • CABOT E.L. & BECKENBACH A.T. 1989. Simultaneous editing of multiple nuclei acid and protein sequences with ESEE. Computer Applied Biosciences 5: 233-234.
    • (1989) Computer Applied Biosciences , vol.5 , pp. 233-234
    • Cabot, E.L.1    Beckenbach, A.T.2
  • 15
    • 0001183436 scopus 로고
    • The genus Porphyra C.Ag. Rhodophyta-Bangiales in the American South Atlantic. II. Uruguayan species
    • COLL J. & OLIVEIRA E.C. 1976. The genus Porphyra C.Ag. Rhodophyta-Bangiales in the American South Atlantic. II. Uruguayan species. Botanica Marina 19: 191-196.
    • (1976) Botanica Marina , vol.19 , pp. 191-196
    • Coll, J.1    Oliveira, E.C.2
  • 16
    • 0035035466 scopus 로고    scopus 로고
    • Porphyra drewiana, a new species of red algae (Bangiales, Rhodophyta) from Brazil
    • COLL J. & OLIVEIRA E.C. 2001. Porphyra drewiana, a new species of red algae (Bangiales, Rhodophyta) from Brazil. Phycological Research 49: 67-72.
    • (2001) Phycological Research , vol.49 , pp. 67-72
    • Coll, J.1    Oliveira, E.C.2
  • 17
    • 0026605675 scopus 로고
    • The gene coding for small ribosomal subunit RNA in the basidiomycete Ustilago maydis contains a group I intron
    • DE WACHTER R., NEEFS J.M., GORIS A. & VAN DE PEER Y. 1992. The gene coding for small ribosomal subunit RNA in the basidiomycete Ustilago maydis contains a group I intron. Nucleic Acids Research 20: 1251-1257.
    • (1992) Nucleic Acids Research , vol.20 , pp. 1251-1257
    • De Wachter, R.1    Neefs, J.M.2    Goris, A.3    Van De Peer, Y.4
  • 18
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • FELSENSTEIN J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 25
    • 0032781909 scopus 로고    scopus 로고
    • Molecular divergence of the SSU rRNA gene and internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta)
    • KUNIMOTO M., KITO H., KAMINISHI Y., MIZUKAMI Y. & MURASE N. 1999b. Molecular divergence of the SSU rRNA gene and internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta). Journal of Applied Phycology 11: 211-216.
    • (1999) Journal of Applied Phycology , vol.11 , pp. 211-216
    • Kunimoto, M.1    Kito, H.2    Kaminishi, Y.3    Mizukami, Y.4    Murase, N.5
  • 27
    • 0005044431 scopus 로고
    • The Porphyra lanceolata-P. pseudolanceolata (Bangiales, Rhodophyta) complex unmasked: Recognition of new species based on isozymes, morphology, chromosomes, and distribution
    • LINDSTROM S.C. & COLE K.M. 1992. The Porphyra lanceolata-P. pseudolanceolata (Bangiales, Rhodophyta) complex unmasked: recognition of new species based on isozymes, morphology, chromosomes, and distribution. Phycologia 31: 431-448.
    • (1992) Phycologia , vol.31 , pp. 431-448
    • Lindstrom, S.C.1    Cole, K.M.2
  • 28
    • 0027845705 scopus 로고
    • The systematics of Porphyra: Character evolution in closely related species
    • LINDSTROM S.C. & COLE K.M. 1993. The systematics of Porphyra: character evolution in closely related species. Hydrobiologia 260/ 261: 151-157.
    • (1993) Hydrobiologia , vol.260-261 , pp. 151-157
    • Lindstrom, S.C.1    Cole, K.M.2
  • 29
    • 0141724829 scopus 로고    scopus 로고
    • L gene sequences reveal relationships among north-east Pacific species of Porphyra (Bangiales, Rhodophyta) and a new species, P. aestivalis
    • LINDSTROM S.C. & FREDERICQ S. 2003. rbcL gene sequences reveal relationships among north-east Pacific species of Porphyra (Bangiales, Rhodophyta) and a new species, P. aestivalis. Phycological Research 51: 211-224.
    • (2003) Phycological Research , vol.51 , pp. 211-224
    • Lindstrom, S.C.1    Fredericq, S.2
  • 30
    • 0025678737 scopus 로고
    • Modeling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
    • MICHEL F. & WESTHOF E. 1990. Modeling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. Journal of Molecular Biology 216: 585-610.
    • (1990) Journal of Molecular Biology , vol.216 , pp. 585-610
    • Michel, F.1    Westhof, E.2
  • 31
    • 0031842446 scopus 로고    scopus 로고
    • Effect of DNA preparation from laver (Porphyra yezoensis) thalli on reproducibility of RAPD (random amplified polymorphic DNA) patterns
    • MIZUKAMI Y., HITOSHI K., KUNIMOTO M. & KOBAYASHI M. 1998. Effect of DNA preparation from laver (Porphyra yezoensis) thalli on reproducibility of RAPD (random amplified polymorphic DNA) patterns. Journal of Applied Phycology 10: 23-29.
    • (1998) Journal of Applied Phycology , vol.10 , pp. 23-29
    • Mizukami, Y.1    Hitoshi, K.2    Kunimoto, M.3    Kobayashi, M.4
  • 32
    • 0032322014 scopus 로고    scopus 로고
    • Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the RuBisCo spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. 1. North America
    • MÜLLER K.M., SHEATH R.G., VIS M.L., CREASE T.J. & COLE K.M. 1998. Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the RuBisCo spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. 1. North America. Phycologia 37: 195-207.
    • (1998) Phycologia , vol.37 , pp. 195-207
    • Müller, K.M.1    Sheath, R.G.2    Vis, M.L.3    Crease, T.J.4    Cole, K.M.5
  • 33
    • 0034882882 scopus 로고    scopus 로고
    • A structural and phylogenetic analysis of the group IC1 introns in the order Bangiales (Rhodophyta)
    • MÜLLER K.M., CANNONE J.J., GUTELL R.R. & SHEATH R.G. 2001a. A structural and phylogenetic analysis of the group IC1 introns in the order Bangiales (Rhodophyta). Molecular Biology and Evolution 18: 1654-1667.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 1654-1667
    • Müller, K.M.1    Cannone, J.J.2    Gutell, R.R.3    Sheath, R.G.4
  • 34
    • 0347039141 scopus 로고    scopus 로고
    • Ribosomal DNA phylogeny of the Bangiophycidae (Rhodophyta) and the origin of secondary plastids
    • MÜLLER K.M., OLIVEIRA M.C., SHEATH R.G. & BHATTACHARYA D. 2001b. Ribosomal DNA phylogeny of the Bangiophycidae (Rhodophyta) and the origin of secondary plastids. American Journal of Botany 88: 1390-1400.
    • (2001) American Journal of Botany , vol.88 , pp. 1390-1400
    • Müller, K.M.1    Oliveira, M.C.2    Sheath, R.G.3    Bhattacharya, D.4
  • 35
    • 0037803618 scopus 로고    scopus 로고
    • Systematics of Bangia (Bangiales, Rhodophyta) in North America. II. Biogeographical trends in karyology: Chromosome numbers and linkage with gene sequence phylogenetic trees
    • MÜLLER K.M., COLE K.M. & SHEATH R.G. 2003. Systematics of Bangia (Bangiales, Rhodophyta) in North America. II. Biogeographical trends in karyology: chromosome numbers and linkage with gene sequence phylogenetic trees. Phycologia 42: 209-219.
    • (2003) Phycologia , vol.42 , pp. 209-219
    • Müller, K.M.1    Cole, K.M.2    Sheath, R.G.3
  • 37
    • 0013237619 scopus 로고    scopus 로고
    • Four new species of Porphyra (Bangiales, Rhodophyta) from the New Zealand region described using traditional characters and 18S rDNA sequence data
    • NELSON W.A., BROOM J.E. & FARR T.J. 2001. Four new species of Porphyra (Bangiales, Rhodophyta) from the New Zealand region described using traditional characters and 18S rDNA sequence data. Cryptogamie, Algologie 22: 263-284.
    • (2001) Cryptogamie, Algologie , vol.22 , pp. 263-284
    • Nelson, W.A.1    Broom, J.E.2    Farr, T.J.3
  • 38
    • 0034887570 scopus 로고    scopus 로고
    • Evolutionary dynamics of multiple group I introns in the nuclear ribosomal RNA genes of the endoparasitic fungi of the genus Cordyceps
    • NIKOH N. & FUKATSU T. 2001. Evolutionary dynamics of multiple group I introns in the nuclear ribosomal RNA genes of the endoparasitic fungi of the genus Cordyceps. Molecular Biology and Evolution 18: 1631-1642.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 1631-1642
    • Nikoh, N.1    Fukatsu, T.2
  • 40
    • 0001127197 scopus 로고
    • The genus Porphyra C. Ag. (Rhodophyta-Bangiales) in the American South Atlantic. I. Brazilian species
    • OLIVEIRA E.C. & COLL J. 1975. The genus Porphyra C. Ag. (Rhodophyta-Bangiales) in the American South Atlantic. I. Brazilian species. Botanica Marina 18: 191-197.
    • (1975) Botanica Marina , vol.18 , pp. 191-197
    • Oliveira, E.C.1    Coll, J.2
  • 42
    • 0033760849 scopus 로고    scopus 로고
    • Phylogeny of the Bangiophycidae (Rhodophyta) and the secondary endosymbiotic origin of algal plastids
    • OLIVEIRA M.C. & BHATTACHARYA D. 2000. Phylogeny of the Bangiophycidae (Rhodophyta) and the secondary endosymbiotic origin of algal plastids. American Journal of Botany 87: 482-492.
    • (2000) American Journal of Botany , vol.87 , pp. 482-492
    • Oliveira, M.C.1    Bhattacharya, D.2
  • 43
    • 0028211831 scopus 로고
    • Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia
    • OLIVEIRA M.C. & RAGAN M.A. 1994. Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia. Molecular Biology and Evolution 11: 195-207.
    • (1994) Molecular Biology and Evolution , vol.11 , pp. 195-207
    • Oliveira, M.C.1    Ragan, M.A.2
  • 44
    • 84983883156 scopus 로고
    • A preliminary investigation of the order Bangiales (Bangiophycidae, Rhodophyta) based on sequences of the nuclear small-subunit ribosomal RNA genes
    • OLIVEIRA M.C., KURNIAWAN J., BIRD C.J., RICE E.L., MURPHY C.A., SINGH R.K., GUTELL R.R. & RAGAN M.A. 1995. A preliminary investigation of the order Bangiales (Bangiophycidae, Rhodophyta) based on sequences of the nuclear small-subunit ribosomal RNA genes. Phycological Research 43: 71-79.
    • (1995) Phycological Research , vol.43 , pp. 71-79
    • Oliveira, M.C.1    Kurniawan, J.2    Bird, C.J.3    Rice, E.L.4    Murphy, C.A.5    Singh, R.K.6    Gutell, R.R.7    Ragan, M.A.8
  • 46
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • POSADA D. & CRANDALL K.A. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 47
    • 0027320136 scopus 로고
    • The nuclear 18S ribosomal RNA gene of the red algae Hildenbrandia rubra contains a group I intron
    • RAGAN M.A., BIRD C.J., RICE E.L. & SINGH R.K. 1993. The nuclear 18S ribosomal RNA gene of the red algae Hildenbrandia rubra contains a group I intron. Nucleic Acids Research 21: 3898.
    • (1993) Nucleic Acids Research , vol.21 , pp. 3898
    • Ragan, M.A.1    Bird, C.J.2    Rice, E.L.3    Singh, R.K.4
  • 49
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • SAITOU N. & NEI M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406-425.
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 50
    • 0003117296 scopus 로고
    • Amplification of ribosomal RNA genes for molecular evolution studies
    • Ed. by M.A. Innes, D.H. Gelfand, J.J. Snisnky & T.J. White, Academic Press, San Diego, CA
    • SOGIN M.L. 1990. Amplification of ribosomal RNA genes for molecular evolution studies. In: PCR protocols. A guide to methods and applications (Ed. by M.A. Innes, D.H. Gelfand, J.J. Snisnky & T.J. White), pp. 307-314. Academic Press, San Diego, CA.
    • (1990) PCR Protocols. A Guide to Methods and Applications , pp. 307-314
    • Sogin, M.L.1
  • 51
    • 0024967184 scopus 로고
    • A self-splicing intron in the small subunit rRNA gene of Pneumocystis carinii
    • SOGIN M.L. & EDMAN J.C. 1989. A self-splicing intron in the small subunit rRNA gene of Pneumocystis carinii. Nucleic Acids Research 17: 5349-5359.
    • (1989) Nucleic Acids Research , vol.17 , pp. 5349-5359
    • Sogin, M.L.1    Edman, J.C.2
  • 52
    • 84989640535 scopus 로고
    • Molecular analysis reveals cryptic diversity in Porphyra (Rhodophyta)
    • STILLER J.W. & WAALAND J.R. 1993. Molecular analysis reveals cryptic diversity in Porphyra (Rhodophyta). Journal of Phycology 29: 506-517.
    • (1993) Journal of Phycology , vol.29 , pp. 506-517
    • Stiller, J.W.1    Waaland, J.R.2
  • 54
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • TAMURA K. & NEI M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10: 512-526.
    • (1993) Molecular Biology and Evolution , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 56
    • 0036704280 scopus 로고    scopus 로고
    • A simple restriction fragment length polymorphism (RLFP) assay to discriminate common Porphyra (Bangiophycidae, Rhodophyta) taxa from the Northwest Atlantic
    • TEASDALE B., WEST A., TAYLOR H. & KLEIN A. 2002. A simple restriction fragment length polymorphism (RLFP) assay to discriminate common Porphyra (Bangiophycidae, Rhodophyta) taxa from the Northwest Atlantic. Journal of Applied Phycology 14: 293-298.
    • (2002) Journal of Applied Phycology , vol.14 , pp. 293-298
    • Teasdale, B.1    West, A.2    Taylor, H.3    Klein, A.4
  • 59
    • 0003220365 scopus 로고    scopus 로고
    • Catalogue of species of Porphyra in the world, with special reference to the type locality and bibliography
    • YOSHIDA T., NOTOYA M., KIKUCHI N. & MIYATA M. 1997. Catalogue of species of Porphyra in the world, with special reference to the type locality and bibliography. Natural History Research, Special Issue 3: 5-18.
    • (1997) Natural History Research, Special Issue , vol.3 , pp. 5-18
    • Yoshida, T.1    Notoya, M.2    Kikuchi, N.3    Miyata, M.4


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