A yeast artificial chromosome (YAC) contig encompassing the critical region of the X-linked lymphoproliferative disease (XLP) locus

Genomics

Volumn 39, Issue 1, 1997, Pages 55-65

  Lanyi, Arpad ^a   Li, BiFang ^a   Li, ShaoBing ^a   Talmadge, Catherine B ^a   Brichacek, Beda ^a   Davis, Jack R ^a   Kozel, Beth A ^a   Trask, Barbara ^b   Van Den Engh, Ger ^b   Uzvolgyi, Eva ^a   Stanbridge, Eric J ^c   Nelson, David L ^d   Chinault, Craig ^d   Heslop, Helen ^e   Gross, Thomas G ^a   Seemayer, Thomas A ^a   Klein, George ^f   Purtilo, David T ^a   Sumegi, Janos ^a  

^a UNIVERSITY OF NEBRASKA MEDICAL CENTER   (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^e ST JUDE CHILDREN S RESEARCH HOSPITAL   (United States)

^f KAROLINSKA INSTITUTE   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHIMERA; DNA SEQUENCE; GENE DELETION; GENE MAPPING; HUMAN; HYPOGAMMAGLOBULINEMIA; INFECTIOUS MONONUCLEOSIS; LYMPHOMA; LYMPHOPROLIFERATIVE DISEASE; PRIORITY JOURNAL; X CHROMOSOME; X CHROMOSOME LINKAGE; YEAST ARTIFICIAL CHROMOSOME;

EID: 18744432112     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1996.4466     Document Type: Article

References (36)

1. Albertsen, O. H., et al. (1990). Construction and characterization of a yeast artificial chromosome library containing seven haploid human genome equivalents. Proc. Natl. Acad. Sci. USA 87: 4256-4260.
2. Anand, R., Riley, J. H., Butler, R., et al. (1990). A 3.5 genome equivalent multi-access YAC library: Construction, characterization, screening and storage. Nucleic Acids Res. 18: 1951-1956.
3. Bird, A. P. (1986). CpG-rich islands and function of DNA methylation. Nature 321: 209-213.
4. Chumakov, I., Rigault, P., Guillou, S., et al. (1992). Continuum of overlapping clones spanning the entire human chromosome 21q. Nature 359: 380-387.
5. Coffey, A. J., Dunham, A., Howell, G. R., Rhodes, S., Brooksbank, R., Marsh, S., Steingruber, H., Harris, A., Porta, G., Schlessinger, D., and Bentley, D. (1995). Construction of a 2-3 Mb YAC contig in Xq25 in the critical region for XLP and reordering of the consensus map. 6th International Workshop on Human X Chromosome Mapping, Banff, Alberta, Canada, 16-18 June 1995. Abstract, http:// gc.bcm.tmc.edu.8088. or Cytogenet. Cell Genet. 71: 307-342.
6. Feinberg, A. P., and Vogelstein, B. (1983). A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Ann. Biochem. 132: 6-13.
7. Gardiner-Garden, M., and Frommer, M. (1987). CpG islands in vertebrate genomes. J. Mol. Biol. 196: 261-282.
8. Green, E. D., and Olson, M. V. (1990). Systematic screening of yeast artificial chromosome libraries using the polymerase chain reaction. Proc. Natl. Acad. Sci. USA 87: 1213-1217.
9. Grierson, H. L., Skare, J., Hawk, J., Pauza, M., and Purtilo, D. T. (1991). Immunglobulin class and subclass deficiencies prior to Epstein-Barr virus (EBV) infection in males with X-linked lymphoproliferative disease. Am. J. Med. Genet. 40: 294-297.
10. Harrington, D. S., Weisenburger, D. D., and Purtilo, D. T. (1987). Malignant lymphoma in the X-linked lymphoproliferative syndrome. Cancer 59: 1419-1429.
11. Klein, G. (1975). The Epstein-Barr virus and neoplasia. N. Engl. J. Med. 293: 1353-1357.
12. Klein, G. (1994). Epstein-Barr virus strategy in normal and neoplastic B cells. Cell 77: 791-793.
13. Markin, R., Mroczek, E., Weisenburger, D., et al. (1987). Hepatitis in infectious mononucleosis. Gastroenterology 93: 1210-1217.
14. McCabe, E. R. B., Towbin, J. A., Van den Engh, G. J., and Trask, B. J. (1992). Xp21 cotigous gene syndrome: Deletion quantitation with bivariate flow karyotyping allows mapping of patient breakpoints. Am. J. Hum. Genet. 51: 1277-1285.
15. Nelson, D. L., et al. (1989). Alu polymerase chain reaction: A method for rapid isolation of human-specific sequences from complex DNA sources. Proc. Natl. Acad. Sci. USA 86: 6686-6690.
16. Nelson, D. L. (1990). Current method for YAC clone characterization. Genet. Ann. Technol. Appl. 7(5): 100-109.
17. Nelson, D. L., et al. (1991). Alu-primed polymerase chain reaction for regional assignment 110 yeast artificial chromosome clones from the human X chromosome: Identification of clones associated with a disease locus. Proc. Natl. Acad. Sci. USA 88: 6157-6161.
18. Nussbaum, R. L., Airnart, S. D., and Ledbetter, D. H. (1986). A rodent-human hybrid containing Xq24-qter sensitive fragile site. Am. J. Med. Genet. 23: 457-466.
19. Purtilo, D. T., Cassel, C. K., Yang, J. P. S., et al. (1975). X-linked recessive progressive combined variable immunodeficiency (Duncan's disease). Lancet, 935-940.
20. Purtilo, D. T., Grierson, H. L., Davies, J. R., and Okano, M. (1991). The X-linked lymphoproliferative disease: From autopsy toward cloning the gene 1975-1990. Pediatr. Pathol. 11: 685-710.
21. Riley, J., Butler, R., Ogilvie, D., et al. (1990). A novel, rapid method for isolation of terminal sequences from yeast artificial chromosomes (YAC) clones. Nucleic Acids Res. 18: 2887-2890.
22. Sanger, W., Grierson, H. L., Skare, J., Pirruccello, S., Fordyce, R., and Purtilo, D. T. (1989). Partial Xq25 deletion in a family with the X-linked lymphoproliferative disease (XLP). Cancer Genet. Cytogenet. 47: 163-169.
23. Schwartz, D. A., and Cantor, C. R. (1984). Separation of yeast chromosome-sized DNAs by pulsed field gel electrophoresis. Cell 37: 67-75.
24. Seemayer, T. A., Gross, T. G., Egeler, R. M., Pirruccello, S. J., Davis, J. R., Kelly, C. M., Okano, M., Lanyi, A., and Sumegi, J. (1995). X-linked lymphoproliferative disease: Twenty-five years after the discovery. Pediatr. Res. 38(4): 471-478.
25. Skare, J., Milunsky, A., Byron, K., and Sullivan, J. (1987). Mapping the X-linked lymphoproliferative syndrome. Proc. Natl. Acad. Sci. USA 74: 5463-5467.
26. Skare, J. C., Grierson, H. I., Sullivan, J. L., et al. (1989). Linkage analysis of seven kindreds with the X-linked lymphoproliferative syndrome confirms that the XLP locus is near DXS42 and DXS 37. Hum. Genet. 82: 354-358.
27. Skare, J., Wu, B. L., Madan, S., et al. (1993). Characterization of three overlapping deletions causing X-linked lymphoproliferative disease. Genomics 16: 254-255.
28. Sumegi, J., Wang, J. Y., Zhen, D. K. Eudy, J. D., Talmadge, C. B., Li, B. F., Berglund, P., Weston, M. D., Yao, S. F., Ma-Edmonds, M., Overbeck, L., Kelley, P. M., Zabarovsky, E., Uzvolgyi, E., Stanbridge, E. J., Klein, G., and Kimberling, W. J. (1996). The construction of a yeast artificial chromosome (YAC) contig in the vicinity of the Usher syndrome type IIa (USH2a) gene in 1q41. Genomics 35: 79-86.
29. Talmadge, C. B., Zhen, D. K., Wang, J. Y., Berglund, P., Li, B. F., Weston, M. D., Kimberling, W. J., Zabarovsky, E. R., Stanbridge, E. J., Klein, G., and Sumegi, J. (1995). Construction and characterization of a NotI linking library from human chromosome region 1q25-qter. Genomics 29: 105-114.
30. Trask, B. J., van den Engh, G., Nussbaum, R., and Schwartz, C. (1990). Quantification of DNA content structurally abnormal X chromosomes and X chromosome aneuploidy using high resolution bivariate flow karyotyping. Cytometry 11: 184-195.
31. Verma, R. S., and Babu, A. (1989). Human chromosomes. In "Manual of Basic Techniques," p. 192, Pergamon, New York.
32. Whitehead Institute, MIT Center for Genomic Research (1995). "Human Genetic Mapping Project: Data Release 8."
33. Wu, B. L., Milunsky, A., Nelson, D., et al. (1993). High-resolution mapping of probes near the X-linked lymphoproliferative disease (XLP) locus. Genomics 17: 163-170.
34. Wyandt, H. E., Sanger, W. G., Grierson, H. L., Skare, J. C., Milunsky, A., and Purtilo, D. T. (1989). Chromosomal deletion of Xq25 in an individual with X-linked lymphoproliferative disease. Am. J. Hum. Genet. 33: 426-430.
35. Yokoi, H., Hadano, S., Kogi, M., et al. (1994). Isolation of expressed sequences encoded by the human Xq terminal portion using microclone probes generated by laser microdissection. Genomics 20: 404-411.
36. Yunis, J. J. (1976). High resolution of human chromosomes. Science 191: 1268-1270.