Genetic structure of a Cuban population based on nine short tandem repeat loci

International Journal of Legal Medicine

Volumn 119, Issue 3, 2005, Pages 137-141

  Carpio, Yamila ^a   Sainz De La Peña, Maria Victoria ^b   Santiesteban, Marta ^b   Amaro, Fermín ^c   Ferreira, Raul ^d   Lleonart, Ricardo ^a  

^a CENTER FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Cuba)

^b Lab Ctrl de Criminalística   (Cuba)

^c Instituto de Medicina Legal   (Cuba)

^d HOSPITAL CLINICOQUIRÚRGICO HERMANOS AMEIJEIRAS   (Cuba)

Author keywords

Cuban population; Genetic structure; Microsatellites; Short tandem repeats

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; CAUCASIAN; CONTROLLED STUDY; CUBA; DEMOGRAPHY; FORENSIC MEDICINE; GENE LOCUS; GENETIC DATABASE; GENETIC VARIABILITY; HUMAN; NEGRO; PRIORITY JOURNAL; SHORT TANDEM REPEAT;

CONTINENTAL POPULATION GROUPS; CUBA; DNA FINGERPRINTING; GENE FREQUENCY; GENETICS, POPULATION; HUMANS; TANDEM REPEAT SEQUENCES; VARIATION (GENETICS);

EID: 18744413943     PISSN: 09379827     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00414-005-0522-3     Document Type: Article

References (28)

1. Albeza MV, Picornell A, Acreche N, Tomas C, Castro JA, Ramon MM (2002) Genetic variability at 14 STR loci in the Puna population of northwestern Argentina. Int J Leg Med 116:126-132
2. Andres MI, Prieto V, Flores IC, Sanz P (1996) Population genetics of three STRs: TH01, CSF1PO and TPOX in Southern Spain. Adv Forensic Haemog 6:489-491
3. Bell B, Nievas P, Abecia E, Martínez-Jarreta B, Hinojal R, Martinez-Cordero A (2000) Population genetics of the STR loci HUMCS F1PO, HUMF13A01, HUMFES/FPS and D12S391 in Asturias (Northern Spain). Forensic Sci Int 113:21-23
4. Budowle B, Moretti TR (1999) Genotype profiles for six population groups at the 13 CODIS short tandem repeat core loci and other PCR-based loci. Forensic Sci Commun 1(2)
5. Budowle B, Monson KL, Chakraborty R (1996) Estimating minimum allele frequencies for DNA profile frequency estimates for PCR-based loci. Int J Leg Med 108:173-176
6. Crespillo M, Luque JA, Fernández R, Ramírez E, García P, Valverde JL (1997) Allele frequency distributions of 13 PCR-based systems in a population from North-east Spain. Int J Leg Med 110:223-225
7. Gene M, Carracedo A, Huguet E, Pérez-Pérez A, Moreno P (1998) Population genetics of the D12S391, CSF1PO and TPOX loci in Catalonia (Northeast Spain). Int J Leg Med 111:52-54
8. Gene M, Moreno P, Borrego N, Pique E, Brandt C, Mas J, Luna M, Corbella J, Huguet E (2001) The Bubi population of Equatorial Guinea characterized by HUMTH01, HUMVWA31A, HUMCS F1PO, HUMTPOX, D3S1358, D8S1179, D18S51 and D19S253 STR polymorphisms. Int J Leg Med 114:298-300
9. Goncalves R, Jesús J, Fernandes AT, Brehm A (2002) Genetic profile of a multi-ethnic population from Guiné-Bissau (west African coast) using the new PowerPlex 16 System kit. Forensic Sci Int 129:78-80
10. Goudet J, Raymond M, De Meeüs T, Rousset F (1996) Testing differentiation in diploid populations. Genetics 144:1933-1940
11. Guanche J (1996) Componentes Etnicos de la Nación Cubana. Fundación Fernando Ortiz, Ediciones Unión, Ciudad de La Habana
12. Hidalgo PC, Cabrera J, Castellanos T, López N, González O, Villar M, Bauer I (1999). Abnormal hemoglobins and racial admixture in Villa Clara province. Cuban J Hum Genet 1(2)
13. Huguet E, Borrego N, Pinheiro MF, Luna M, Corbella J, Mas J, Gené M, Moreno P (1998) Annobon Island population (Equatorial Guinea) characterised by five VNTRs-PCR polymorphisms. Prog Forensic Genet 7:329-331
14. Lewis PO, Zaykin D (2001) Genetic data analysis: computer program for the analysis of allelic data. Version 1.0 (d16c). Free program distributed by the authors over the Internet from http://www. lewis.eeb.uconn.edu/lewishome/ software.html
15. Lleonart R, Riego E, Sainz de la Pena MV, Bacallao K, Amaro F, Santiesteban M, Blanco M, Currenti H, Puentes A, Rolo F, Herrera L, de la Fuente (2000) Forensic identification of skeletal remains from members of Ernesto Che Guevara's guerrillas in Bolivia based on DNA typing. Int J Leg Med 113(2):98-101
16. Lleonart R, Carpio Y, Sainz de la Peña MV, Santiesteban M, Rodríguez G, Ferreira R, Amaro F, Riego E, Bacallao K, Blanco M (2003) Genetic structure of the contemporary Cuban population for nine STR loci. Int Congr Ser 1239:147-148
17. Martínez-Jarreta B, Diaz Roche P, Budowle B, Abecia E, Castellano M, Casalod Y (1998) Pyrenean population data on 3 tetrameric short tandem repeat loci - HUMTH01, TPOX and CSF1PO-derived using a STR multiplex system. Prog Forensic Genet 7:312-314
18. Martínez-Labarga C, Rickards O, Scacchi R, Corbo RM, Biondi G, Peña JA, Varas de Vieira C, Guevara AEB, Mesa Saturino MS, De Stefano GF (1999) Genetic population structure of two African-Ecuadorian communities of Esmeraldas. Am J Phys Anthropol 109:159-174
19. Minch E, MICROSAT, http://www.hpgl.stanford.edu/projects/ microsat/) (Stanford University)
20. Pérez-Lezaun A, Calafell F, Clarimón J, Bosch E, Mateu E, Gusmao L, Amorim A, Benchemsi N, Bertranpetit J (2000) Allele frequencies of 13 short tandem repeats in population samples from the Iberian Peninsula and northern Africa. Int J Leg Med 113:208-214
21. Raymond M, Rousset F (1995a) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Heredity 86:248-249
22. Raymond M, Rousset F (1995b) An exact test for population differentiation. Evolution 49:1280-1283
23. Reynolds J, Weir BS, Cockerham CC (1983) Estimation of the coancestry coefficient: basis for a short-term genetic distance. Genetics, 105:767-779
24. Rivero de la Calle, M (1984) Antropología de la Población Adulta Cubana. Editorial Científico-Técnica, La Habana
25. Szibor R, Krawczak M, Hering S, Edelmann J, Kuhlisch E, Krause D (2003) Use of X-linked markers for forensic purposes. Int J Leg Med 117:67-74
26. Tofanelli S, Boschi I, Bertoneri S, Coia V, Taglioli L, Franceschi MG, Destro-Bisol G, Pascali V, Paoli G (2003) Variation at 16 STR loci in Rwandans (Hutu) and implications on profile frequency estimation in Bantu-speakers. Int J Leg Med 17:121-126
27. Walsh PS, Metzger DA, Higuchi R (1991) Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. BioTechniques 10:506
28. Weir S (1996) Genetic Data Analysis II. Sinauer Associates, Sunderland, MA, USA