Complete sequence and gene organization of the Nosema spodopterae rRNA gene

Journal of Eukaryotic Microbiology

Volumn 52, Issue 1, 2005, Pages 52-54

  Tsai, Shu Jen ^a   Huang, Wei Fone ^a   Wang, Chung Hsiung ^a  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

Nosema spodopterae; rRNA secondary structures

Indexed keywords

MOLECULAR ANALYSIS;

MICROSPORIDIA; NOSEMA; NOSEMA BOMBYCIS; NOSEMA SPODOPTERAE;

PROTOZOAL DNA; RIBOSOME RNA; RNA 5S; SPACER DNA;

ANIMAL; ARTICLE; CHEMISTRY; CONFORMATION; DNA BASE COMPOSITION; GENETICS; MOLECULAR GENETICS; NOSEMA; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PROTOZOAN SPORE; SEQUENCE ALIGNMENT;

ANIMALS; BASE COMPOSITION; BASE SEQUENCE; DNA, INTERGENIC; DNA, PROTOZOAN; MOLECULAR SEQUENCE DATA; NOSEMA; NUCLEIC ACID CONFORMATION; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL; RNA, RIBOSOMAL, 5S; SEQUENCE ALIGNMENT; SPORES, PROTOZOAN;

EID: 18744380068     PISSN: 10665234     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1550-7408.2005.3291rr.x     Document Type: Article

References (20)

1. Baker, M. D., Vossbrinck, C. R., Maddox, J. V. & Undeen, A. H. 1994. Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data. J. Invertebr. Pathol., 64:100-106.
2. Canning, E. U., Curry, A., Cheney, S., Lafranchi-Tristem, N. J. & Haque, M. A. 1999. Vairimorpha imperfecta n.sp., a microsporidian exhibiting an abortive octosporous sporogony in Plutella xylostella L. (Lepidoptera: Yponomeutidae). Parasitology, 119:273-286.
3. Curgy, J. J., Vávra, J. & Vivarè, C. P. 1980. Presence of ribosomal RNAs with prokaryotic properties in Microsporidia, eukaryotic organisms. Biol. Cell, 38:49-51.
4. Delihas, N., Anderson, J. & Singhal, R. P. 1984. Structure, function and evolution of 5-S ribosomal RNAs. Prog. Nucleic Acid Res. Mol. Biol., 31:161-190.
5. Gatehouse, H. S. & Malone, L. A. 1998. The ribosomal RNA gene region of Nosema apis (Microspora): DNA sequence for small and large subunit rRNA genes and evidence of a large tandem repeat unit size. J. Invertebr. Pathol., 71:97-105.
6. Gresoviac, S. J., Khattra, J. S., Nadler, S. A., Kent, M. L., Devlin, R. H., Vivares, C. P., Fuente, E. DeLa & Hedrick, R. P. 2000. Comparison of small subunit ribosomal RNA gene and internal transcribed spacer sequences among isolates of the intranuclear microsporidian Nucleospora salmonis. J. Eukaryot. Microbiol., 47:379-387.
7. Huang, H. W., Lo, C. F., Tseng, C. C., Peng, S. E., Chou, C. M. & Kou, C. H. 1998. The small subunit ribosomal RNA gene sequence of Pleistophora anguillarum and the use of PCR primers of diagnostic detection of the parasite. J. Eukaryot. Microbiol., 4:556-560.
8. Huang, W. F., Tsai, S. J., Lo, C. F., Soichi, Y. & Wang, C. H. 2004. The novel organization and complete sequence of the ribosomal gene of Nosema bombycis. Fung. Genet. Biol., 41:473-481.
9. Ishihara, R. & Hayashi, Y. 1968. Some properties of ribosomes from the sporoplasm of Nosema bombycis. J. Invertebr. Pathol., 11:377-385.
10. Katinka, M. D., Duprat, S., Cornillot, E., Metenier, G., Thomarat, F., Prensier, G., Barbe, V., Peyretaillade, E., Brottier, P., Wincker, P., Delbac, F., El Alaoui, H., Peyret, P., Saurin, W., Gouy, M., Weissenbach, J. & Vivares, C. P. 2001. Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Nature, 414:450-453.
11. Kawakami, Y., Inoue, T., Kikuchi, M., Takayanagi, M., Sunairi, M., Ando, T. & Ishihara, R. 1992. Primary and secondary structures of 5S ribosomal RNA of Nosema bombycis (Nosematidae, Microsporidia). J. Seric. Sci. Jpn., 61:321-329.
12. Müller, A., Trammer, T., Ghioralia, G., Seitz, H. M., Diehl, V. & Franzen, E. 2000. Ribosomal RNA of Nosema algerae and phylogenetic relationship to other microsporidia. Parasitol. Res., 86:18-23.
13. Nilsen, F., Endresen, C. & Hordvik, I. 1998. Molecular phylogeny of microsporidia with particular reference to species that infect the muscles of fish. J. Eukaryot. Microbiol., 45:535-543.
14. Peyretaillade, E., Biderre, C, Peyret, P., Duffieux, F., Metenier, G., Gouy, M., Michot, B. & Vivares, C. P. 1998. Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSUrRNA reduced to the universal core. Nucleic Acids Res., 26:3513-3520.
15. Swofford, D. L. 2003. PAUP *, Phylogenetic Analysis Using Parasimony (* and Other Methods). Sinauer Associates, Sunderland, MA.
16. Szymanski, M., Barciszewska, M. Z., Erdmann, V. A. & Barciszewski, J. 2003. 5 S rRNA: structure and interactions. J. Biochem., 371:641-651.
17. Tsai, S. J., Kou, G. H., Lo, C. F. & Wang, C. H. 2002. Complete sequence and structure of ribosomal RNA gene of Heterosporis anguillarum. Dis. Aquat. Org., 49:199-206.
18. Tsai, S. J., Lo, C. F., Soichi, Y. & Wang, C. H. 2003. The characterization of Microsporidian isolates (Nosematidae: Nosema) from five important lepidopteran pests in Taiwan. J. Invertebr. Pathol., 83:51-59.
19. Wuyts, J., De Rijk, P., Van de Peer, Y., Winkelmans, T. & De Wachter, R. 2001. The European large subunit ribosomal RNA database. Nucleic Acids Res., 29:175-177.
20. Zhu, X., Wittner, M., Tanowitz, H. B., Cali, A. & Weiss, L. M. 1994. Ribosomal RNA sequences of Enterocytozoon bieneusi, Septata intestinalis and Ameson michaelis: phylogenetic construction and structural correspondence. J. Eukaryot. Microbiol., 41:204-209.