Optimization of gold nanoparticle-based DNA detection for microarrays

Journal of Fluorescence

Volumn 15, Issue 2, 2005, Pages 161-170

  Festag, Grit ^a   Steinbrück, Andrea ^a   Wolff, Andreas ^a   Csaki, Andrea ^a   Möller, Robert ^a   Fritzsche, Wolfgang ^a  

^a LEIBNIZ INSTITUTE OF PHOTONIC TECHNOLOGY   (Germany)

Author keywords

AFM; BSA blocking; DNA microarray; Fluorescence; Gold nanoparticle; Silanes

Indexed keywords

ATOMIC FORCE MICROSCOPY; DNA; DYES; GOLD; OPTIMIZATION; RADIOACTIVITY; SURFACE ROUGHNESS;

BSA BLOCKING; DNA BINDING; DNA MICROARRAYS; GOLD NANOPARTICLES;

NANOSTRUCTURED MATERIALS;

DNA; GOLD; PRIMER DNA;

ARTICLE; ATOMIC FORCE MICROSCOPY; CHEMISTRY; DNA MICROARRAY; FLUORESCENCE MICROSCOPY; NUCLEIC ACID HYBRIDIZATION; NUCLEOTIDE SEQUENCE; PARTICLE SIZE;

BASE SEQUENCE; DNA; DNA PRIMERS; GOLD; MICROSCOPY, ATOMIC FORCE; MICROSCOPY, FLUORESCENCE; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PARTICLE SIZE;

BOVINAE;

EID: 18644364331     PISSN: 10530509     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10895-005-2524-4     Document Type: Article

References (27)

1. M. Schena, R. A. Heller, T. P. Theriault, K. Konrad, E. Lachenmeier, and R. W. Davis (1998). Microarrays: Biotechnology's discovery platform for functional genomics. Trends Biotechnol. 16, 301-306.
2. C. M. Niemeyer and D. Blohm (1999). DNA Microarrays. Angew Chem. 111, 3039-3043.
3. C. A. Mirkin, R. L. Letsinger, R. C. Mucic, and J. J. Storhoff ( 1996). A DNA-based method for rationally assembling nanoparticles into macroscopic materials. Nature 382, 607-609.
4. A. P. Alivisatos, K. P. Johnsson, X. Peng, T. E. Wilson, C. J. Loweth, M. P. Bruchez Jr., and P. G. Schultz (1996). Organization of 'nanocrystal molecules' using DNA. Nature 382, 609-611.
5. J. Reichert, A. Csaki, J. M. Köhler, and W. Fritzsche (2000). Chip-based optical detection of DNA hybridization by means of Nanobead Labeling. Anal. Chem. 72, 6025-6029.
6. T. A. Taton, C. A. Mirkin, and R. L. Letsinger (2000). Scanometric DNA array detection with nanoparticle probes. Science 289, 1757-1760.
7. R. Möller, A. Csaki, J. M. Köhler, and W. Fritzsche (2001). Electrical classification of the concentration of bioconjugated metal colloids after surface adsorption and silver enhancement. Langmuir 17, 5426-5430.
8. S. J. Park, T. A. Taton, and C. A. Mirkin (2002). Array-based electrical detection of DNA with nanoparticle probes. Science 295, 1503-1506.
9. G.-J. Zhang, R. Möller, A. Csaki, and W. Fritzsche (2002). in W. Fritzsche (Ed.), AIP Conference Proceedings on DNA Based Molecular Construction. Jena, Germany, Vol. 640, pp. 13-21.
10. N. Zammatteo, L. Jeanmart, S. Hamels, S. Courtois, P. Louette, L. Hevesi, and J. Remacle (2000). Comparison between different strategies of covalent attachment of DNA to glass surfaces to build DNA microarrays. Anal. Biochcm. 280, 143-150.
11. J. J. Storhoff, R. Elghanian, R. C. Mucic, C. A. Mirkin, and R. L. Letsinger. (1998). One pot colorimetric differentiation of polynucleotides with single base imperfections using gold nanoparticle probes. J. Am. Chem. Soc. 120, 1959-1964.
12. A. Csaki, R. Möller, W. Sträube, J. M. Köhler, and W. Fritzsche (2001). DNA monolayer on gold substrates characterized by nanoparticle labeling and scanning force microscopy. Nucleic Acids Res. 29, e81.
13. H. Cai, Y. Wang, P. He, and Y. Fang (2002). Electrochemical detection of DNA hybridization based on silver-enhanced gold nanoparticle label. Anal. Chim. Acta 469, 165-172.
14. J. B. Lamture, K. L. Beattie, B. E. Burke, M. D. Eggers, D. J. Ehrlich, R. Fowler, M. A. Mollis, B. B. Kosicki, R. K. Reich, S. R. Smith, R. S. Varma, and M. E. Hogan (1994). Direct detection of nucleic acid hybridization on the surface of a charee coupled device. Nucleic Acids Res. 22, 2121-2125.
15. Z. Guo, R. A. Guilfoyle, A. J. Thiel, R. Wang, and L. M. Smith (1994). Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports. Nucleic Acids Res. 22, 5456-5465.
16. R. Wirtz, C. Wälti, W. A. Germishuizen, M. Pepper, A. P. J. Middelberg and A. G. Davies (2003). High-sensitivity colorimetric detection of DNA hybridzation on a gold surface with high spatial resolution. Nanotechnohgy 14, 7-10.
17. G. W. Hacker, G. Danscher, G. Bernatzky, W. Muss, H. Adam, and J. Thurner (1988). Silver acetate autometallography: An alternative enhancement technique for immunogold-silver staining (IGSS) and silver amplification of gold, silver, mercury and zinc in tissues. J. Histotechnol. 11, 213-221.
18. W. Fritzsche, A. Csaki, and R. Möller (2002). Nanoparticle-based optical detection of molecular interactions for DNA-chip technology. SPIE 4626, 17-22.
19. F. Diehl, S. Grahlmann, M. Beier, and J. D. Hoheisel (2001). Manufacturing DNA microarrays of high spot homogeneity and reduced background signal. Nucleic Acids Res. 29, e38.
20. Y. H. Yang, M. J. Buckley, and T. P. Speed (2001). Analysis of cDNA microarray images. Brief Bioinform. 2, 341-349.
21. C. Kooperberg, T. G. Fazzio, J. J. Delrow, and T. Tsukiyama (2002). Improved background correction for spotted DNA microarrays. J. Comput. Biol. 9, 55-66.
22. T. L. Fare, E. M. Coffey, H. Dai, Y. D. He, D. A. Kessler, K. A. Kilian, J. E. Koch, E. LeProust, M. J. Marion. M. R. Meyer, et al. (2003). Effects of atmospheric ozone on microarray data quality. Anal. Chem. 75, 4672-7675.
23. S. Taylor, S. Smith, B. Windle, and A. Guiseppi-Elie (2003). Impact of surface chemistry and blocking strategies on DNA microarrays. Nucleic Acids Res. 31, e87.
24. J. J. Cras, C. A. Rowe-Taitt, D. A. Nivens, and F. S. Ligler (1999). Comparison of chemical cleaning methods of glass in preparation for silanization. Biosens. Bioelectr. 14, 683-688.
25. J. Li, H. Wang, Y. Zhao, L. Chen, N. He, and Z. Lu (2001). Assembly method fabricating linkers for covalently bonding DNA on glass surface. Sensors 1, 53-59.
26. G. Jogikalmath (2002) in H. Group (Ed.). Available from http://afm1.pharm.utah.edu/BELCourse/BELSurfSilanPattern.html.
27. P. L. Dolan, Y. Wu, L. K. Ista, R. L. Metzenberg, M. A. Nelson, and G. P. Lopez (2001). Robust and efficient synthetic method for forming DNA microarrays. Nucleic Acids Res. 29, el 07.