메뉴 건너뛰기




Volumn 149, Issue 5, 2003, Pages 1297-1310

Detection and analysis of transpositionally active head-to-tail dimers in three additional Escherichia coli IS elements

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; DIMER;

EID: 18544392419     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.26121-0     Document Type: Review
Times cited : (13)

References (52)
  • 1
    • 0035085110 scopus 로고    scopus 로고
    • Transposase and cointegrase: Specialized transposition proteins of bacterial insertion sequence IS21 and related elements
    • Berger, B. & Haas, D. (2001). Transposase and cointegrase: specialized transposition proteins of bacterial insertion sequence IS21 and related elements. Cell Mol Life Sci 58, 403-419.
    • (2001) Cell Mol. Life Sci. , vol.58 , pp. 403-419
    • Berger, B.1    Haas, D.2
  • 2
    • 0014674485 scopus 로고
    • A complementation analysis of the restriction and modification of DNA in E. coli
    • Boyer, H. & Roulland-Dussoix, J. (1969). A complementation analysis of the restriction and modification of DNA in E. coli. J Mol Biol 41, 459-472.
    • (1969) J. Mol. Biol. , vol.41 , pp. 459-472
    • Boyer, H.1    Roulland-Dussoix, J.2
  • 3
    • 0021105279 scopus 로고
    • Cointegrate formation mediated by Tn9. II. Activity of IS1 is modulated by external DNA sequences
    • Chandler, M. & Galas, D. J. (1983). Cointegrate formation mediated by Tn9. II. Activity of IS1 is modulated by external DNA sequences. J Mol Biol 170, 61-91.
    • (1983) J. Mol. Biol. , vol.170 , pp. 61-91
    • Chandler, M.1    Galas, D.J.2
  • 4
    • 85158048416 scopus 로고    scopus 로고
    • Insertion sequences revisited
    • Edited by N. L. Craig, R. Craigie, M. Gellert & A. Lambowitz. Washington, DC: American Society for Microbiology
    • Chandler, M. & Mahillon, J. (2002). Insertion sequences revisited. In Mobile DNA II, pp. 305-366. Edited by N. L. Craig, R. Craigie, M. Gellert & A. Lambowitz. Washington, DC: American Society for Microbiology.
    • (2002) Mobile DNA II , pp. 305-366
    • Chandler, M.1    Mahillon, J.2
  • 5
    • 0023259525 scopus 로고
    • Novel rearrangements of IS30 carrying plasmids leading to the reactivation of gene expression
    • Dalrymple, B. (1987). Novel rearrangements of IS30 carrying plasmids leading to the reactivation of gene expression. Mol Gen Genet 207, 413-420.
    • (1987) Mol. Gen. Genet. , vol.207 , pp. 413-420
    • Dalrymple, B.1
  • 6
    • 0021111813 scopus 로고
    • pEMBL: A new family of single stranded plasmids
    • Dente, L., Cesareni, G. & Cortese, R. (1983). pEMBL: a new family of single stranded plasmids. Nucleic Acids Res 11, 1645-1655.
    • (1983) Nucleic Acids Res. , vol.11 , pp. 1645-1655
    • Dente, L.1    Cesareni, G.2    Cortese, R.3
  • 7
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • Devereux, J., Haeberli, P. & Smithies, O. (1984). A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12, 387-395.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 8
    • 0035887029 scopus 로고    scopus 로고
    • Transient promoter formation: A new feedback mechanism for regulation of IS911 transposition
    • Duval-Valentin, G., Normand, C., Khemici, V., Marty, B. & Chandler, M. (2001). Transient promoter formation: a new feedback mechanism for regulation of IS911 transposition. EMBO J 20, 5802-5811.
    • (2001) EMBO J. , vol.20 , pp. 5802-5811
    • Duval-Valentin, G.1    Normand, C.2    Khemici, V.3    Marty, B.4    Chandler, M.5
  • 9
    • 0030586269 scopus 로고    scopus 로고
    • The construction and characterization of an effective transpositional system based on IS30
    • Farkas, T., Kiss, J. & Olasz, F. (1996). The construction and characterization of an effective transpositional system based on IS30. FEBS Lett 390, 53-58.
    • (1996) FEBS Lett. , vol.390 , pp. 53-58
    • Farkas, T.1    Kiss, J.2    Olasz, F.3
  • 10
    • 0020826920 scopus 로고
    • The origin of extrachromosomal circular copia elements
    • Flavell, A. J. & Ish-Horowicz, D. (1983). The origin of extrachromosomal circular copia elements. Cell 34, 415-419.
    • (1983) Cell , vol.34 , pp. 415-419
    • Flavell, A.J.1    Ish-Horowicz, D.2
  • 11
    • 0002734187 scopus 로고
    • Bacterial insertion sequences
    • Edited by D. E. Berg & M. M. Howe. Washington, DC: American Society for Microbiology
    • Galas, D. J. & Chandler, M. (1989). Bacterial insertion sequences. In Mobile DNA, pp. 109-162. Edited by D. E. Berg & M. M. Howe. Washington, DC: American Society for Microbiology.
    • (1989) Mobile DNA , pp. 109-162
    • Galas, D.J.1    Chandler, M.2
  • 12
    • 0030994725 scopus 로고    scopus 로고
    • Circularized Ac/Ds transposons: Formation, structure and fate
    • Gorbunova, V. & Levy, A. A. (1997). Circularized Ac/Ds transposons: formation, structure and fate. Genetics 145, 1161-1169.
    • (1997) Genetics , vol.145 , pp. 1161-1169
    • Gorbunova, V.1    Levy, A.A.2
  • 13
    • 0036837780 scopus 로고    scopus 로고
    • Escherichia coli insertion sequence IS150: Transposition via circular and linear intermediates
    • Haas, M. & Rak, B. (2002). Escherichia coli insertion sequence IS150: transposition via circular and linear intermediates. J Bacteriol 184, 5833-5841.
    • (2002) J. Bacteriol. , vol.184 , pp. 5833-5841
    • Haas, M.1    Rak, B.2
  • 14
    • 0038671414 scopus 로고    scopus 로고
    • Regulation of transposition activity in the prokaryotic insertion sequences IS30 and IS186
    • PhD thesis, Philosophisch-Naturwissenschaftlichen Fakultät der Universität Basel, Biozentrum der Universität Basel, Switzerland
    • Keller, M. P. (1996). Regulation of transposition activity in the prokaryotic insertion sequences IS30 and IS186. PhD thesis, Philosophisch-Naturwissenschaftlichen Fakultät der Universität Basel, Biozentrum der Universität Basel, Switzerland.
    • (1996)
    • Keller, M.P.1
  • 15
    • 0032821157 scopus 로고    scopus 로고
    • Formation and transposition of the covalently closed IS30 circle: The relation between tandem dimers and monomeric circles
    • Kiss, J. & Olasz, F. (1999). Formation and transposition of the covalently closed IS30 circle: the relation between tandem dimers and monomeric circles. Mol Microbiol 34, 37-52.
    • (1999) Mol. Microbiol. , vol.34 , pp. 37-52
    • Kiss, J.1    Olasz, F.2
  • 16
    • 0030875734 scopus 로고    scopus 로고
    • Two abundant intramolecular transposition products, resulting from reactions initiated at a single end, suggest that IS2 transposes by an unconventional pathway
    • Lewis, L. A. & Grindley, N. D. (1997). Two abundant intramolecular transposition products, resulting from reactions initiated at a single end, suggest that IS2 transposes by an unconventional pathway. Mol Microbiol 25, 517-529.
    • (1997) Mol. Microbiol. , vol.25 , pp. 517-529
    • Lewis, L.A.1    Grindley, N.D.2
  • 18
    • 0018562382 scopus 로고
    • Multipurpose cloning system based on the single-stranded DNA bacteriophage M13
    • Messing, J. (1979). Multipurpose cloning system based on the single-stranded DNA bacteriophage M13. Recomb DNA Tech Bull NIH 2, 43-48.
    • (1979) Recomb. DNA Tech. Bull. NIH , vol.2 , pp. 43-48
    • Messing, J.1
  • 19
    • 0027245588 scopus 로고
    • 2 and its role in IS30-mediated transpositional DNA rearrangements
    • 2 and its role in IS30-mediated transpositional DNA rearrangements. Mol Gen Genet 239, 177-187.
    • (1993) Mol. Gen. Genet. , vol.239 , pp. 177-187
    • Olasz, F.1    Stalder, R.2    Arber, W.3
  • 20
    • 0030716394 scopus 로고    scopus 로고
    • Terminal inverted repeats of insertion sequence IS30 serve as targets for transposition
    • Olasz, F., Farkas, T., Kiss, J., Arini, A. & Arber, W. (1997). Terminal inverted repeats of insertion sequence IS30 serve as targets for transposition. J Bacteriol 179, 7551-7558.
    • (1997) J. Bacteriol. , vol.179 , pp. 7551-7558
    • Olasz, F.1    Farkas, T.2    Kiss, J.3    Arini, A.4    Arber, W.5
  • 22
    • 0027064858 scopus 로고
    • Transposase-induced excision and circularization of the bacterial insertion sequence IS911
    • Polard, P., Prere, M. F., Fayet, O. & Chandler, M. (1992). Transposase-induced excision and circularization of the bacterial insertion sequence IS911. EMBO J 11, 5079-5090.
    • (1992) EMBO J. , vol.11 , pp. 5079-5090
    • Polard, P.1    Prere, M.F.2    Fayet, O.3    Chandler, M.4
  • 24
    • 0036134916 scopus 로고    scopus 로고
    • Diversity of Tn4001 transposition products: The flanking IS256 elements can form tandem dimers and IS circles
    • Prudhomme, M., Turlan, C., Claverys, J. P. & Chandler, M. (2002). Diversity of Tn4001 transposition products: the flanking IS256 elements can form tandem dimers and IS circles. J Bacteriol 184, 433-443.
    • (2002) J. Bacteriol. , vol.184 , pp. 433-443
    • Prudhomme, M.1    Turlan, C.2    Claverys, J.P.3    Chandler, M.4
  • 25
    • 0023112502 scopus 로고
    • Mode of replicon fusion mediated by the duplicated insertion sequence IS21 in Escherichia coli
    • Reimmann, C. & Haas, D. (1987). Mode of replicon fusion mediated by the duplicated insertion sequence IS21 in Escherichia coli. Genetics 115, 619-625.
    • (1987) Genetics , vol.115 , pp. 619-625
    • Reimmann, C.1    Haas, D.2
  • 26
    • 0025093317 scopus 로고
    • The istA gene of insertion sequence IS21 is essential for cleavage at the inner 3′ ends of tandemly repeated IS21 elements in vitro
    • Reimmann, C. & Haas, D. (1990). The istA gene of insertion sequence IS21 is essential for cleavage at the inner 3′ ends of tandemly repeated IS21 elements in vitro. EMBO J 9, 4055-4063.
    • (1990) EMBO J. , vol.9 , pp. 4055-4063
    • Reimmann, C.1    Haas, D.2
  • 28
    • 0024006123 scopus 로고
    • P element insertions and rearrangements at the singed locus of Drosophila melanogaster
    • Roiha, H., Rubin, G. M. & O'Hare, K. (1988). P element insertions and rearrangements at the singed locus of Drosophila melanogaster. Genetics 119, 75-83.
    • (1988) Genetics , vol.119 , pp. 75-83
    • Roiha, H.1    Rubin, G.M.2    O'Hare, K.3
  • 29
    • 0021173167 scopus 로고
    • Isolation of the closed circular form of the transposable element Tc1 in Caenorhabditis elegans
    • Rose, A. M. & Snutch, T. P. (1984). Isolation of the closed circular form of the transposable element Tc1 in Caenorhabditis elegans. Nature 311, 485-486.
    • (1984) Nature , vol.311 , pp. 485-486
    • Rose, A.M.1    Snutch, T.P.2
  • 30
    • 0021224421 scopus 로고
    • Extrachromosomal copies of transposon Tc1 in the nematode Caenorhabditis elegans
    • Ruan, K. & Emmons, S. W. (1984). Extrachromosomal copies of transposon Tc1 in the nematode Caenorhabditis elegans. Proc Natl Acad Sci U S A 81, 4018-4022.
    • (1984) Proc. Natl. Acad. Sci. U. S. A. , vol.81 , pp. 4018-4022
    • Ruan, K.1    Emmons, S.W.2
  • 31
    • 0035161027 scopus 로고    scopus 로고
    • IS186 insertion at a hot spot in the lon promoter as a basis for lon protease deficiency of Escherichia coli B: Identification of a consensus target sequence for IS186 transposition
    • SaiSree, L., Reddy, M. & Gowrishankar, J. (2001). IS186 insertion at a hot spot in the lon promoter as a basis for lon protease deficiency of Escherichia coli B: identification of a consensus target sequence for IS186 transposition. J Bacteriol 183, 6943-6946.
    • (2001) J. Bacteriol. , vol.183 , pp. 6943-6946
    • SaiSree, L.1    Reddy, M.2    Gowrishankar, J.3
  • 34
    • 0028214048 scopus 로고
    • Translational control in production of transposase and in transposition of insertion sequence IS3
    • Sekine, Y., Eisaki, N. & Ohtsubo, E. (1994). Translational control in production of transposase and in transposition of insertion sequence IS3. J Mol Biol 235, 1406-1420.
    • (1994) J. Mol. Biol. , vol.235 , pp. 1406-1420
    • Sekine, Y.1    Eisaki, N.2    Ohtsubo, E.3
  • 35
    • 0030024072 scopus 로고    scopus 로고
    • Identification and characterization of the linear IS3 molecules generated by staggered breaks
    • Sekine, Y., Eisaki, N. & Ohtsubo, E. (1996). Identification and characterization of the linear IS3 molecules generated by staggered breaks. J Biol Chem 271, 197-202.
    • (1996) J. Biol. Chem. , vol.271 , pp. 197-202
    • Sekine, Y.1    Eisaki, N.2    Ohtsubo, E.3
  • 36
    • 0030961895 scopus 로고    scopus 로고
    • Isolation and characterization of IS1 circles
    • Sekine, Y., Eisaki, N., Kobayashi, K. & Ohtsubo, E. (1997a). Isolation and characterization of IS1 circles. Gene 191, 183-190.
    • (1997) Gene , vol.191 , pp. 183-190
    • Sekine, Y.1    Eisaki, N.2    Kobayashi, K.3    Ohtsubo, E.4
  • 37
    • 0031217939 scopus 로고    scopus 로고
    • Inhibition of transpositional recombination by OrfA and OrfB proteins encoded by insertion sequence IS3
    • Sekine, Y., Izumi, K., Mizuno, T. & Ohtsubo, E. (1997b). Inhibition of transpositional recombination by OrfA and OrfB proteins encoded by insertion sequence IS3. Genes Cells 2, 547-557.
    • (1997) Genes Cells , vol.2 , pp. 547-557
    • Sekine, Y.1    Izumi, K.2    Mizuno, T.3    Ohtsubo, E.4
  • 38
    • 0033585032 scopus 로고    scopus 로고
    • Linearization and transposition of circular molecules of insertion sequence IS3
    • Sekine, Y., Aihara, K. & Ohtsubo, E. (1999). Linearization and transposition of circular molecules of insertion sequence IS3. J Mol Biol 294, 21-34.
    • (1999) J. Mol. Biol. , vol.294 , pp. 21-34
    • Sekine, Y.1    Aihara, K.2    Ohtsubo, E.3
  • 39
    • 0022871154 scopus 로고
    • Terminal inverted repeats of prokaryotic transposable element IS186 which can generate duplications of variable length at an identical target sequence
    • Sengstag, C., Iida, S., Hiestand-Nauer, R. & Arber, W. (1986). Terminal inverted repeats of prokaryotic transposable element IS186 which can generate duplications of variable length at an identical target sequence. Gene 49, 153-156.
    • (1986) Gene , vol.49 , pp. 153-156
    • Sengstag, C.1    Iida, S.2    Hiestand-Nauer, R.3    Arber, W.4
  • 40
    • 0028180325 scopus 로고
    • Transposition of IS117, the 2.5kb Streptomyces coelicolor A3(2) 'minicircle': Roles of open reading frames and origin of tandem insertions
    • Smokvina, T., Henderson, D. J., Melton, R. E., Brolle, D. F., Kieser, T. & Hopwood, D. A. (1994). Transposition of IS117, the 2.5kb Streptomyces coelicolor A3(2) 'minicircle': roles of open reading frames and origin of tandem insertions. Mol Microbiol 12, 459-468.
    • (1994) Mol. Microbiol. , vol.12 , pp. 459-468
    • Smokvina, T.1    Henderson, D.J.2    Melton, R.E.3    Brolle, D.F.4    Kieser, T.5    Hopwood, D.A.6
  • 41
    • 0025811731 scopus 로고
    • Factors determining the frequency of plasmid cointegrate formation mediated by insertion sequence IS3 from Escherichia coli
    • Spielmann-Ryser, J., Moser, M., Kast, P. & Weber, H. (1991). Factors determining the frequency of plasmid cointegrate formation mediated by insertion sequence IS3 from Escherichia coli. Mol Gen Genet 226, 441-448.
    • (1991) Mol. Gen. Genet. , vol.226 , pp. 441-448
    • Spielmann-Ryser, J.1    Moser, M.2    Kast, P.3    Weber, H.4
  • 42
    • 0024523547 scopus 로고
    • Characterization of in vitro constructed IS30-flanked transposons
    • Stalder, R. & Arber, W. (1989). Characterization of in vitro constructed IS30-flanked transposons. Gene 76, 187-193.
    • (1989) Gene , vol.76 , pp. 187-193
    • Stalder, R.1    Arber, W.2
  • 43
    • 0023368846 scopus 로고
    • An extrachromosomal form of the Mu transposons of maize
    • Sundaresan, V. & Freeling, M. (1987). An extrachromosomal form of the Mu transposons of maize. Proc Natl Acad Sci U S A 84, 4924-4928.
    • (1987) Proc. Natl. Acad. Sci. U. S. A. , vol.84 , pp. 4924-4928
    • Sundaresan, V.1    Freeling, M.2
  • 45
    • 0345442485 scopus 로고    scopus 로고
    • Vector for IS element entrapment and functional characterization based on turning on expression of distal promoterless genes
    • Szeverényi, I., Hodel, A., Arber, W. & Olasz, F. (1996b). Vector for IS element entrapment and functional characterization based on turning on expression of distal promoterless genes. Gene 174, 103-110.
    • (1996) Gene , vol.174 , pp. 103-110
    • Szeverényi, I.1    Hodel, A.2    Arber, W.3    Olasz, F.4
  • 46
    • 18244413221 scopus 로고    scopus 로고
    • Assembly of a strong promoter following IS911 circularization and the role of circles in transposition
    • Ton-Hoang, B., Betermier, M., Polard, P. & Chandler, M. (1997). Assembly of a strong promoter following IS911 circularization and the role of circles in transposition. EMBO J 16, 3357-3371.
    • (1997) EMBO J. , vol.16 , pp. 3357-3371
    • Ton-Hoang, B.1    Betermier, M.2    Polard, P.3    Chandler, M.4
  • 47
    • 0032481375 scopus 로고    scopus 로고
    • Efficient transposition of IS911 circles in vitro
    • Ton-Hoang, B., Polard, P. & Chandler, M. (1998). Efficient transposition of IS911 circles in vitro. EMBO J 17, 1169-1181.
    • (1998) EMBO J. , vol.17 , pp. 1169-1181
    • Ton-Hoang, B.1    Polard, P.2    Chandler, M.3
  • 48
    • 0028971723 scopus 로고
    • IS1-mediated intramolecular rearrangements: Formation of excised transposon circles and replicative deletions
    • Turlan, C. & Chandler, M. (1995). IS1-mediated intramolecular rearrangements: formation of excised transposon circles and replicative deletions. EMBO J 14, 5410-5421.
    • (1995) EMBO J. , vol.14 , pp. 5410-5421
    • Turlan, C.1    Chandler, M.2
  • 49
    • 0034022309 scopus 로고    scopus 로고
    • The role of tandem IS dimers in IS911 transposition
    • Turlan, C., Ton-Hoang, B. & Chandler, M. (2000). The role of tandem IS dimers in IS911 transposition. Mol Microbiol 35, 1312-1325.
    • (2000) Mol. Microbiol. , vol.35 , pp. 1312-1325
    • Turlan, C.1    Ton-Hoang, B.2    Chandler, M.3
  • 50
    • 0024435766 scopus 로고
    • Mapping of insertion elements IS1, IS2 and IS3 on the Escherichia coli K-12 chromosome. Role of the insertion elements in formation of Hfrs and F′ factors and in rearrangement of bacterial chromosomes
    • Umeda, M. & Ohtsubo, E. (1989). Mapping of insertion elements IS1, IS2 and IS3 on the Escherichia coli K-12 chromosome. Role of the insertion elements in formation of Hfrs and F′ factors and in rearrangement of bacterial chromosomes. J Mol Biol 208, 601-614.
    • (1989) J. Mol. Biol. , vol.208 , pp. 601-614
    • Umeda, M.1    Ohtsubo, E.2
  • 51
    • 0004175451 scopus 로고
    • Funktionelle Analyse des Bakteriellen Insertion-selements IS150
    • PhD thesis, Fakultät für Biologie der Albert-Ludwigs-Universität Freiburg, Germany
    • Welz, C. (1993). Funktionelle Analyse des Bakteriellen Insertion-selements IS150. PhD thesis, Fakultät für Biologie der Albert-Ludwigs-Universität Freiburg, Germany.
    • (1993)
    • Welz, C.1
  • 52
    • 0021943518 scopus 로고
    • Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
    • Yanisch-Perron, C., Vieira, J. & Messing, J. (1985). Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33, 103-119.
    • (1985) Gene , vol.33 , pp. 103-119
    • Yanisch-Perron, C.1    Vieira, J.2    Messing, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.