Genetic variation in the endangered and endemic species Changium smyrnioides (Apiaceae)

Biochemical Systematics and Ecology

Volumn 32, Issue 6, 2004, Pages 583-596

  Qiu, Ying Xiong ^a   Hong, De Yuan ^b   Fu, Cheng Xin ^a   Cameron, Kenneth M ^c  

^a ZHEJIANG UNIVERSITY   (China)

^b INSTITUTE OF BOTANY   (China)

^c Lewis B Dorothy Cullman Prog M   (United States)

Author keywords

Changium smyrnioides; Conservation genetics; Genetic structure; Genetic variation; ISSR

Indexed keywords

CONSERVATION GENETICS; ENDANGERED SPECIES; ENDEMIC SPECIES; GENETIC VARIATION;

ASIA; CHINA; EURASIA; FAR EAST;

APIACEAE; CHANGIUM SMYRNIOIDES;

EID: 1842863541     PISSN: 03051978     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bse.2003.08.004     Document Type: Article

References (46)

1. Avise J.C., Hamrick J.L. Conservation Genetics, Case Histories from Nature. 1996;1-9 Chapman and Hall, New York, USA.
2. Barrett S.C.H., Kohn J.R. Genetics and evolutionary consequences of small population size in plants: implications for conservation. Falk D.A., Holsinger K.E. Genetics and Conservation of Rare Plants. 1991;3-30 Oxford University Press, New York, USA.
3. Camacho F.J., Liston A. Population structure and genetic diversity of Botrychium pumicola (Ophioglossaceae) based on inter-simple sequence repeats (ISSR). Am. J. Bot. 88:2001;1065-1070.
4. Chase M.W., Kesseli R.V., Bawa K. Microsatellite marker for population and conservation genetics of tropical trees. Am. J. Bot. 83:1996;51-57.
5. Doyle J.J. DNA protocols for plants - CTAB total DNA isolation. Hewitt G.M., Johnston A. Molecular Techniques in Taxonomy. 1991;283-293 Springer-Verlag, Berlin, Germany.
6. Ellstrand N.C., Elam D.R. Population genetics consequences of small population size: implications for plant conservation. Ann. Rev. Ecol. Syst. 24:1993;217-243.
7. Esselman E.J., Li J.Q., Crawford D.J., Windus J.L., Wolfe A.D. Clonal diversity in the rare Calamagrostis porteri ssp. insperata (Poaceae): comparative results for allozymes and random amplified polymorphic DNA (RAPD) and intersimple sequence repeat (ISSR) markers. Mol. Ecol. 8:1999;443-451.
8. Excoffier L., Smouse P.E., Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: applications to human mitochondrial DNA restriction data. Genetics. 131:1992;479-491.
9. Fan M.Y., Ge Y., Guan B.H., Yin X.W., Lu Y.J., Li W.C., Chan J. Comparative studies on distribution patterns of Changium smyrnioides and Anthriscus sylvestris population. Bull. Sci. Technol. 19:(3):2003;201-206.
10. Fischer M., Matthies D. RAPD variation in relation to population size and plant fitness in the rare Gentianella germanica (Gentianaceae). Am. J. Bot. 85:(6):1998;811-819.
11. Fischer M., Husi R., Prati D., Peintinger M., Kleunen M.V., Schmid B. RAPD variation among and within small and large populations of the rare clonal plant Ranunculus reptans (Ranunculaceae). Am. J. Bot. 87:(8):2000;1128-1137.
12. Francisco-Ortega J., Santos-Guerra A., Kim S.C., Crawford D.J. Plant genetic diversity in the Canary Islands: a conservation perpective. Am. J. Bot. 87:2000;909-909.
13. Frankel O.H., Brown A.H.D., Burdon J.J. The Conservation of Plant Biodiversity. 1995;Cambridge University Press, Cambridge, UK.
14. Fu C.X., Qiu Y.X., Kong H.H. RAPD analysis for genetic diversity in Changium smyrnioides (Apiaceae), an endangered plant. Bot. Bull. Acad. Sin. 44:2003;13-18.
15. Fu L.G. Chinese Plant Red Book. 1992;Science Press, Beijing, China.
16. Ge X.J., Sun M. Reproductive biology and genetic diversity of a cryptoviviparous mangrove Aegiceras corniculatum (Myrtinaceae) using allozyme and intersimple sequence repeat (ISSR) analysis. Mol. Ecol. 8:1999;2061-2061.
17. Gilbert J.E., Lewis R.B., Wilkinson M.J., Caligari P.D.S. Developing an appropriate strategy to assess genetic variability in plant germplasm collections. Theor. Appl. Genet. 98:1999;1125-1131.
18. Hamrick J.L. The distribution of genetic variation within and among natural plant populations. Schonewald-Cox C.M., Chambers S.M., McBryde B., Thomas W.L. Genetics and Conservation. 1983;335-348 Benjamin/Cummings, Menlo Park, CA, USA.
19. Hamrick J.L., Godt M.J.W. Allozyme diversity in plant species. Brown A.H.D., Clegg M.T., Kahler A.L., Weir B.S. Plant Population Genetics, Breeding and Genetic Resources. 1989;43-63 Sinauer, Sunderland, MA, USA.
20. Hogbin P.M., Peakall R. Evaluation of the conservation of genetic research to the management of endangered plant Zieria prostrata. Conserv. Biol. 13:1999;514-522.
21. Josh S.P., Gupta V.S., Aggarwal R.K., Ranjekar P.K., Brar D.S. Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza. Theor. Appl. Genet. 100:2000;1311-1320.
22. Lewinton R.C. The apportionment of human diversity. Evol. Biol. 6:1972;381-398.
23. Li Q.M., Xu Z.F., He T.H. Ex situ genetic conservation of endangered Vatica guangxiensis (Dipterocarpaceae) in China. Biol. Conserv. 106:2002;151-156.
24. Lynch M., Milligan B.G. Analysis of population genetic structure with RAPD markers. Mol. Ecol. 3:1994;91-99.
25. Miller M.P. Tools for Population Genetic Analysis (TEPGA), Version 1.3. 1997;Department of Biological Sciences, Northern Arizona University, Arizona, USA.
26. Miller, M.P., 1998. AMOVA-PREP 1.01: A program for the Preparation of AMOVA Input Files from Dominant-markers Raw Data. Computer software distributed by author.
27. Nei M. Genetic distance between populations. Am. Nat. 106:1972;283-292.
28. Nei M. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA. 70:1973;3321-3323.
29. Nybom H., Bartish I.V. Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants. Perspect. Plant Ecol. Evol. Syst. 3:2000;93-114.
30. Pan Z.H., She M.L., Liu X.T. Studies on karyotypes and geographical distribution of endemic genera in Apiaceae from China. J. Plant Resour. Environ. 4:1995;1-8.
31. Prevost A., Wilkinson M.J. A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor. Appl. Genet. 98:1999;107-112.
32. Qian W., Ge S., Hong D.Y. Genetic variation within and among populations of a wild rice Oryza granulata from China detected by RAPD and ISSR markers. Theor. Appl. Genet. 102:2001;440-449.
33. Qiu Y.X., Fu C.X. Studies on the endangerment mechanism of and conservation strategies for Changium smyrnioides. Biodivers. Sci. 9:2001;151-156.
34. Qiu Y.X., Huang A.J., Fu C.X. Studies on genetic diversity in Changium smyrnioides Wolff (Umbelliferae). Acta Phytotax. Sin. 38:(2):2000;111-120.
35. Qiu Y.X., Fu C.X. Studies on comparative anatomy of endangered plant Changium smyrnioides. J. Zhejiang Univ. (Agric. Life Sci.). 26:(4):2000;427-432.
36. Rohlf F.J. NTSYS-pc: numerical taxonomy and multivariate analysis system, ver. 2.02. 1997;Exeter Ltd, Setauket, NY, USA.
37. Schaal B.A., Hayworth D.A., Olsen K.M., Rauscher J.T., Smith W.A. Phylogeographic studies in plants: problems and prospects. Mol. Ecol. 7:1998;465-474.
38. Shu P., She M.L. Pollen Photographs and Flora of Umbellifferae in China. 2001;Shanghai Scientific & Technical Publishers, Shanghai.
39. Slatkin M. Gene flow and the geographic structure of populations. Science. 236:1987;787-792.
40. Slatkin M. Gene flow in natural populations. Annu. Rev. Ecol. Syst. 16:1985;393-430.
41. Sun M., Wong K.C. Genetic structure of three orchid species with contrasting breeding systems using RAPDand allozyme markers. Am. J. Bot. 88:(12):2001;2180-2189.
42. Travis S.E., Maschinski J., Keim P. An analysis of genetic variation in Astragalus oremonophylax var. cremnophylax, a critically endangered plant, using AFLP markers. Mol. Ecol. 5:1996;735-745.
43. Williams J.G.K., Kubelik A.R., Livak K.J., Rafalski J.A., Tingey S.V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucl. Acids Res. 18:1990;6531-6535.
44. Wolfe A.D., Liston A. Contributions of PCR-based methods to plant systematics and evolutionary biology. Soltis P.S., Soltis D.E., Doyle J.J. Molecular Systematics of Plants: DNA Sequencing. 1998;43-86 Kluwer, New York, USA.
45. Yeh F.C., Yang R.C., Boyle T., Ye Z.H., Mao J.X. POPGENE, the user friendly shareware for population genetic analysis. 1997;Molecular Biology and Biotechnology Center, University of Alberta, Edmonton, Canada.
46. Zietkiewicz E., Rafalski A., Labuda D. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics. 20:1994;176-183.