Genetic diversity measures of the bovine Alberes breed using microsatellites: Variability among herds and types of coat colour

Journal of Animal Breeding and Genetics

Volumn 121, Issue 2, 2004, Pages 101-110

  Casellas, J ^a   Jimenez N ^a   Fina, M ^a   Tarres J ^a   Sanchez A ^a   Piedrafita, J ^a  

^a UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALIA; BOVINAE; TRANSPOSONS;

EID: 1842844285     PISSN: 09312668     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1439-0388.2003.00441.x     Document Type: Article

References (46)

1. ARANGUREN-MÉNDEZ, J.; JORDANA J.; AVELLANET, R.; TORRENS, M., 2001: Conservación de recursos genéticos en la raza bovina mallorquina: Resultados preliminares para la gestion de la variabilidad genética. In: XVII Reunión de la Asociación Latinoamericana de Producción Animal, La Habana, pp. 1801-1805.
2. BLOTT, S. C.; WILLIAMS, J. L.; HALEY, C. S., 1998: Genetic relationships among European cattle breeds. Anim. Genet. 29: 273-282.
3. CAÑON, J.; ALEXANDRINO, P.; BESSA, I.; CARLEOS, C.; CARRETERO, Y.; DUNNER, S.; FERRAN, N.; GARCIA, D.; JORDANA, J.; LALOË, D.; PEREIRA, A.; SANCHEZ, A.; MOAZAMI-GOUDARZI, K., 2001: Genetic diversity measures of local European beef cattle breeds for conservation purposes. Genet. Sel. Evol. 33: 311-332.
4. CHAKRABORTY, R.; JIN, L., 1992: Heterozygote deficiency, population structure and their implications in DNA fingerprinting. Hum. Genet. 88: 267-272.
5. CHESSER, R. K., 1983: Genetic variability within and among populations of the black-tailed prairie dog. Evolution 37: 320-331.
6. CIAMPOLINI, R.; MOAZAMI-GOUDARZI, K.; VAIMAN, D.; DILLMANN, C.; MAZZANTI, E.; FOULLEY, J. L.; LEVEZIEL, H.; CIANCI, D., 1995: Individual multilocus genotypes using microsatellite polymorphisms to permit the analysis of the genetic variability within and between Italian beef cattle breeds. J. Anim. Sci. 73: 3259-3268.
7. CORNUET, J. M.; LUIKART, G., 1996: Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144: 2001-2014.
8. DI RIENZO, A.; PETERSON, A. C.; GARZA, J. C.; VALDES, A. M.; SLATKIN, M.; FREIMER, N. M., 1994: Mutational processes of simple-sequence repeat loci in human populations. Proc. Natl. Acad. Sci. USA 91: 3166-3170.
9. EDING, J. H.; LAVAL, G., 1999: Measuring genetic uniqueness in livestock. In: J. K. OLDENBROEK (ed.), Genebanks and the Management of Farm Animal Genetic Resources, DLO Institute for Animal Science and Health, Lelystad, The Netherlands, pp. 33-58.
10. EXCOFFIER, L.; SMOUSE, P. E.; QUATTRO, J. M., 1992: Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
11. FELSENSTEIN, J., 1995: PHYLIP - (Phylogeny Inference Package), version 3.55, University of Washington, Seattle, WA.
12. GARCÍA-DORY, M. A.; MARTÍNEZ, S.; OROZCO, F., 1990: Guía de campo de las razas autóctonas de Espana. Alianza, Madrid.
13. GOUDET, J., 1995: FSTAT (version 1.2): A Computer Program to Calculate F-statistics. J. Hered. 86: 485-486.
14. JEANPIERRE, M., 1987: A rapid method for purification of DNA from blood. Nucleic Acids Res. 15: 9611.
15. JORDANA, J.; PIEDRAFITA, J., 1996: The "Bruna dels Pirineus" (Pyrenean brown breed): a genetic study of a rare cattle breed in Catalonia (Spain). Biochem. Syst. Ecol. 6: 485-498.
16. JORDANA, J.; PELEGRÍN, M.; PIEDRAFITA, J., 1991: Relaciones genéticas en bovinos españoles obtenidas a partir del estudio de caracteres morfológicos. ITEA 87A: 50-64.
17. JORDANA, J.; PIEDRAFITA, J.; SÁNCHEZ, A.; PUIG, P., 1992: Comparative F-statistics analysis of the genetic structure of ten Spanish dog breeds. J. Hered. 83: 367-374.
18. JORDANA, J.; PIEDRAFITA, J.; CARRÉ, X.; MARTELL, A., 1999: Conservation genetics of an endangered Catalonian cattle breed ("Alberes"). Genet. Mol. Biol. 22: 387-394.
19. JORDANA, J.; ALEXANDRINO, P.; BEJA-PEREIRA, A.; BESSA, I.; CAÑÓN, J.; CARRETERO, Y.; DUNNER, S.; LALOË, D.; MOAZAMI-GOUDARZI, K.; SÁNCHEZ, A., 2003: Genetic structure of eighteen local south European beef cattle breeds by comparative F-statistics analysis. J. Anim. Breed. Genet. 120: 73-87.
20. KANTANEN, J.; OLSAKER, I.; ADALSTEINSSON, S.; SANDBERG, K.; EYTHORSDOTTIR, E.; PIRHONEN, K.; HOLM, L. E., 1999: Temporal changes in genetic variation of North European cattle breeds. Anim. Genet. 30: 16-27.
21. KIMURA, M.; CROW, J. F., 1964: The number of alleles that can be maintained in a finite population. Genetics 49: 725-738.
22. LAVAL, G.; SAN CRISTOBAL, M.; CHEVALET, C., 2002: Measuring genetic distances between breeds: use of some distances in various short term evolution models. Genet. Sel. Evol. 34: 481-507.
23. LI, W. H., 1976: A mixed model of mutation for electrophoretic identity of proteins within and between populations. Genetics 83: 423-432.
24. LI, C. C.; HORVITZ, D. G., 1953: Some methods of estimating the inbreeding coefficient. Am. J. Hum. Genet. 5: 107-117.
25. MACHUGH, D. E., 1996: Molecular biogeography and genetic structure of domesticated cattle. Doctoral thesis, University of Dublin, Dublin.
26. MASCORT, L., 1957: La raza vacuna de las Alberes. Doctoral thesis, Universidad de Córdoba, Córdoba.
27. MINCH, E., 1997: MICROSAT, Version 1.5b. Stanford University Medical Center, Stanford.
28. MOAZAMI-GOUDARZI, K.; VAIMAN, D.; MERCIER, D.; GROHS, C.; FURET, J. P.; LEVÉZIEL, H.; MARTIN, P., 1994: Emploi de microsatellites pour l'analyse de la diversité génétique des races bovines françaises: premiers résultats. Genet. Sel. Evol. 26 (Suppl. 1): 155-165.
29. MOAZAMI-GOUDARZI, K.; LALOË, D.; FURET, J. P.; GROSCLAUDE, F., 1997: Analysis of genetic relationships between 10 cattle breeds with 17 microsatellites. Anim. Genet. 28: 338-345.
30. NEI, M., 1977: F-statistics and analysis of gene diversity in subdivided populations. Ann. Human Genet. 41: 225-233.
31. NEI, M., 1987: Molecular Evolutionary Genetics. Columbia University Press, New York.
32. OHTA, T.; KIMURA, M., 1973: A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genet. Res. Cambr. 22: 201-204.
33. PIRY, S.; LUIKART, G.; CORNUET, J. M., 1999: BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. J. Heredity 90: 502-503.
34. REYNOLDS, J., 1983: Estimation of the coancestry coefficient basis for a short-term genetic distance. Genetics 105: 767-779.
35. ROBERTSON, A., 1965: The interpretation of genotypic ratios in domestic animal populations. Anim. Prod. 7: 319-324.
36. RUANE, J., 1999: Selecting Breeds for Conservation. In: J. K. OLDENBROEK (ed.), Genebanks and the Conservation of Farm Animal Resources. Institute for Animal Science and Health, Lelystad, The Netherlands, pp. 59-74.
37. SÁNCHEZ BELDA, A., 1984: Razas Bovinas Españolas. Publicaciones de Extensión Agraria, Madrid.
38. SÁNCHEZ BELDA, A., 2000: Raza Alberes. FEAGAS 17: 29-35.
39. SCHERF, B. D., 2000: World Watch List for Domestic Animal Diversity, 3rd edn. FAO, Rome.
40. SCHMID, M.; SAITBEKOVA, N.; GAILLARD, C.; DOLF, G., 1999: Genetic diversity in Swiss cattle breeds. J. Anim. Breed. Genet. 116: 1-8.
41. SCHNEIDER, S.; KUEFFER, J. M.; ROESSLI, D.; EXCOFFIER, L., 1997: ARLEQUIN ver. 1.1. A Software for Population Genetic Data Analysis. University of Geneva, Geneva.
42. SWOFFORD, D. L.; SELANDER, R. B., 1989: BIOSYS-1. A Computer Program for the Analysis of Allelic Variation in Population Genetics and Biochemical Systematics (Release 1.7). University of Illinois, Urbana, Champaign.
43. TAKAHATA, N., 1983: Gene identity and genetic differentiation of populations in the finite island model. Genetics 104: 497-512.
44. TAKEZAKI, N.; NEI, M., 1996: Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144: 389-399.
45. WEIR, B. S.; COCKERHAM, C. C., 1984: Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
46. WRIGHT, S., 1965: The interpretation of population structure by F-statistics with special regard to systems of mating. Evolution 19: 295-420.