Lagging strand replication of rolling-circle plasmids in Streptomyces lividans: An RNA polymerase-independent primer synthesis

Archives of Microbiology

Volumn 181, Issue 4, 2004, Pages 305-313

  Suzuki, Ichiro ^a,c   Kataoka, Masakazu ^a,b   Yoshida, Toshiomi ^a   Seki, Tatsuji ^a  

^a OSAKA UNIVERSITY   (Japan)

^b SHINSHU UNIVERSITY   (Japan)

^c YOKOHAMA NATIONAL UNIVERSITY   (Japan)

Author keywords

Lagging strand; Priming; Replication; Streptomyces

Indexed keywords

ADENOSINE DIPHOSPHATE; ADENOSINE TRIPHOSPHATE; BACTERIAL RNA; CYTIDINE TRIPHOSPHATE; DOUBLE STRANDED DNA; GUANOSINE TRIPHOSPHATE; MAGNESIUM ION; RIFAMPICIN; RNA POLYMERASE; SINGLE STRANDED DNA; URIDINE TRIPHOSPHATE;

ARTICLE; CELL FREE SYSTEM; CONTROLLED STUDY; DNA REPLICATION; ESCHERICHIA COLI; IN VITRO STUDY; IN VIVO STUDY; NONHUMAN; PRIORITY JOURNAL; STREPTOMYCES LIVIDANS;

DNA REPLICATION; DNA, CIRCULAR; DNA, SINGLE-STRANDED; DNA-DIRECTED RNA POLYMERASES; PLASMIDS; STREPTOMYCES;

STREPTOMYCES; STREPTOMYCES LIVIDANS;

EID: 1842789159     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00203-004-0656-6     Document Type: Article

References (48)

1. Arai K, Kornberg A (1979) A general priming system employing only dnaB protein and primase for DNA replication. Proc Natl Acad Sci USA 76:4308-4312
2. Arai K, Kornberg A (1981a) Mechanism of dnaB protein action. III. Allosteric role of ATP in the alteration of DNA structure by dnaB protein in priming replication. J Biol Chem 256:5260-5266
3. Arai K, Kornberg A (1981b) Mechanism of dnaB protein action. IV. General priming of DNA replication by dnaB protein and primase compared with RNA polymerase. J Biol Chem 256:5267-5272
4. Arai K, Low RL, Kornberg A (1981) Movement and site selection for priming by the primosome in phage φX174 DNA replication. Proc Natl Acad Sci USA 78:707-711
5. Beppu T (1995) Signal transduction and secondary metabolism: prospects for controlling productivity. Trends Biotechnol 13:264-269
6. Birch P, Khan SA (1992) Replication of single-stranded plasmid pT181 DNA in vitro. Proc Natl Acad Sci USA 89:290-294
7. Boe L, Gros MF, te Riele H, Ehrlich SD, Gruss A (1989) Replication origins of single-stranded-DNA plasmid pUB110. J Bacteriol 171:3366-3372
8. Bruand C, Ehrlich SD, Jannière L (1995) Primosome assembly site in Bacillus subtilis. EMBO J 11:2642-2650
9. Conrad SE, Campbell JL (1979) Characterization of an improved in vitro DNA replication system for Escherichia coli plasmids. Nucl Acids Res 6:3289-3303
10. Dempsey LA, Zhao AC, Khan SA (1995) Localization of the start sites of lagging-strand replication of rolling-circle plasmids from gram-positive bacteria. Mol Microbiol 15:679-687
11. Deng ZT, Kieser T, Hopwood DA (1988) "Strong incompatibility" between derivatives of the Streptomyces multi-copy plasmid pIJ101. Mol Gen Genet 214:286-294
12. Fuller RS, Kaguni JM, Kornberg A (1981) Enzymatic replication of the origin of the Escherichia coli chromosome. Proc Natl Acad Sci USA 78:7370-7374
13. Gruss A, Ehrlich SD (1989) The family of highly interrelated single-stranded deoxyribonucleic acid plasmids. Microbiol Rev 53:231-241
14. Gruss A, Ross HF, Novick RP (1987) Functional analysis of a palindromic sequence required for normal replication of several staphylococcal plasmids. Proc Natl Acad Sci USA 84:2165-2169
15. Hagège J, Pernodet JL, Friedmann A, Guérineau M (1993) Mode and origin of replication of pSAM2, a conjugative integrating element of Streptomyces ambofaciens. Mol Microbiol 10:799-812
16. Hopwood DA, Bibb MJ, Chater KF, Kieser T, Bruton CJ, Kieser HM, Lydiate DJ, Smith CP, Ward JM, Schrempf H (1985) Genetic manipulation of Streptomyces: a laboratory manual. The John Innes Foundation, Norwich, UK
17. Inuzuka M, Helinski DR (1978) Replication of antibiotic resistance plasmid R6K DNA in vitro. Biochemistry 17:2567-2573
18. Jannière L, Gruss A, Ehrlich SD (1993) Plasmids. In: Sonenshein AL, Losick R, Hoch JA (eds) Bacillus subtilis and other gram positive bacteria: biochemistry, physiology, and molecular genetics. American Society for Microbiology, Washington DC, pp 625-644
19. Kaguni JM, Kornberg A (1982) The p subunit of RNA polymerase holoenzyme confers specificity in priming M13 viral DNA replication. J Biol Chem 257:5437-5443
20. Kataoka M, Seki T, Yoshida, T (1991) Five genes involved in self-transmission of pSN22, a Streptomyces plasmid. J Bacteriol 173:4220-4228
21. Kataoka M, Kiyose YM, Michisuji Y, Horiguchi T, Seki T, Yoshida T (1994a) Complete nucleotide sequence of the Streptomyces plasmid, pSN22; genetic organization and correlation with genetic properties. Plasmid 32:55-69
22. Kataoka M, Kuno N, Horiguchi T, Seki T, Yoshida T (1994b) Replication of the Streptomyces plasmid pSN22 through single-stranded intermediates. Mol Gen Genet 242:130-136
23. Katz E, Thompson CJ, Hopwood, DA (1983) Cloning and expression of the tyrosinase gene from Streptomyces antibioticus in Streptomyces lividans. J Gen Microbiol 129:2703-2714
24. Khan SA (1997) Rolling-circle replication of bacterial plasmids. Microbiol Mol Biol Rev 61:442-455
25. Kieser T, Hopwood DA, Wright HM, Thompson CJ (1982) pIJ101, a multi-copy broad host-range Streptomyces plasmid: functional analysis and development of DNA cloning vectors. Mol Gen Genet 185:223-238
26. Kornberg A, Baker TA (1992) DNA replication, 2nd edn. WH Freeman & Co, New York
27. Kramer MG, Khan SA, Espinosa M (1997) Plasmid rolling circle replication: identification of the RNA polymerase-directed primer RNA and requirement for DNA polymerase I for lagging strand synthesis. EMBO J. 16:5784-5795
28. Kramer MG, Espinosa M, Misra TK, Khan SA (1998) Lagging strand replication of rolling-circle plasmids: specific recognition of the ssoA-type origins in different gram-positive bacteria. Proc Natl Acad Sci USA 95:10505-10510
29. Leenhouts KJ, Tolner B, Bron S, Kok J, Venema G, Seegers JFML (1991) Nucleotide sequence and characterization of the broad-host-range lactococcal plasmid pWVO1. Plasmid 26:55-66
30. Muth G, Farr M, Hartmann V, Wohlleben W (1995) Streptomycesghanaensis plasmid pSG5: nucleotide sequence analysis of the self-transmissible minimal replicon and characterization of the replication mode. Plasmid 33:113-126
31. Novick RP (1989) Staphylococcal plasmids and their replication. Annu Rev Microbiol 43:537-565
32. Pigac J, Vujaklija D, Toman Z, Gamulin V, Schrempf H (1988) Structural instability of a bifunctional plasmid pZG1 and single-stranded DNA formation in Streptomyces. Plasmid 19:222-230
33. te Riele H, Michel B, Ehrlich SD (1986a) Single-stranded plasmid DNA in Bacillus subtilis and StaphylococcuStaphylococcus aureus. Proc Natl Acad Sci USA 83:2541-2545
34. te Riele, H, Michel B, Ehrlich SD (1986b) Are single-stranded circular intermediates involved in plasmid DNA replication? EMBO J 5:631-637
35. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
36. Seegers JFML, Zhao AC, Meijer WJJ, Khan SA, Venema G, Bron S (1995) Structural and functional analysis of the single-strand origin of replication from the lactococcal plasmid pWVO1. Mol Gen Genet 249:43-50
37. Servín-González L, Sampieri AIII, Cabello J, Galván L, Juárez V, Castro C (1995) Sequence and functional analysis of the Streptomyces phaeochromogenes plasmid pJV1 reveals a modular organization of Streptomyces plasmid that replicate by rolling circle. Microbiol 141:2499-2510
38. del Solar GH, Moscoso M, Espinosa M. (1993) Rolling-circle replicating plasmids from gram-positive and gram-negative bacteria: a wall falls. Mol Microbiol 8:789-796
39. Southern EM (1975) Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98:503-517
40. Studier FW, Moffatt BA (1986) Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J Mol Biol 189:113-130
41. Suzuki I, Kataoka M, Seki T, Yoshida T (1997a) Three single strand origins located on both strands of the Streptomyces rolling circle plasmid pSN22. Plasmid 37:51-64
42. Suzuki I, Seki T, Yoshida T (1997b) Nucleotide sequence of a nicking site of the Streptomyces plasmid pSN22 replicating by the rolling circle mechanism. FEMS Microbiol Lett 150:283-288
43. Thompson J, Cundliffe E (1981) Purification and properties of an RNA methylase produced by Streptomyces azureus and involved in resistance to thiostrepton. J Gen Microbiol 124:291-297
44. Thompson CJ, Ward JM, Hopwood DA (1982) Cloning of antibiotic resistance and nutritional genes in Streptomycetes. J Bacteriol 151:668-677
45. Thompson J, Rae S, Cundliffe E (1984) Coupled transcription-translation in extracts of Streptomyces lividans. Mol Gen Genet 195:39-43
46. Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119
47. Yokoyama E, Doi K, Kimura M, Ogata S (1996) Detection of the single-stranded DNA of Streptomyces plasmid pSA1.1 and a binding histone-like protein. FEMS Microbiol Lett 138:197-200
48. Zaman S, Radnedge L, Richards H, Ward, JM (1993) Analysis of the site for second-strand initiation during replication of the Streptomyces plasmid pIJ101. J Gen Microbiol 139:669-676