Methods for Stokesian dynamics simulations of nonspherical particles and chains

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 69, Issue 1 1, 2004, Pages 114061-1140616

  Kutteh, Ramzi ^a  

^a JOHNS HOPKINS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; BOUNDARY ELEMENT METHOD; COMPUTER SIMULATION; HYDRODYNAMICS; MATHEMATICAL MODELS; MOLECULAR DYNAMICS; SEDIMENTATION;

COLLOIDAL SEDIMENTATION; STOKES EQUATIONS;

FLUID DYNAMICS;

EID: 1842584313     PISSN: 1063651X     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (40)

1. B. Cichocki, R.B. Jones, R. Kutteh, and E. Wajnryb, J. Chem. Phys. 112, 2548 (2000).
2. R.B. Jones and R. Kutteh, Phys. Chem. Chem. Phys. 1, 2131 (1999).
3. R.B. Jones and R. Kutteh, J. Chem. Phys. 112, 11 080 (2000).
4. J.C. Mallinson, The Foundations of Magnetic Recording, 2nd ed. (Academic Press, San Diego, 1993).
5. R. Kutteh and P.B. Visscher, in Computer Simulation Studies in Condensed Matter Physics, edited by D.P. Landau, S.P. Lewis, and H.B. Schüttler (Springer-Verlag, Heidelberg, 2001), Vol. XIV.
6. G.K. Youngren and A. Acrivos, J. Fluid Mech. 69, 377 (1975).
7. J. Vincent, N. Phanthien, and T. Trancong, J. Rheol. 35, 1 (1991).
8. S.T. Kim, Y.O. Fuentes, and S.J. Karrila, J. Stat. Phys. 62, 1197 (1991).
9. P. Pakdel and S. Kim, J. Rheol. 35, 797 (1991).
10. M.J. Gluckman, R. Pfeffer, and S. Weinbaum, J. Fluid Mech. 50, 705 (1971).
11. M.J. Gluckman, S. Weinbaum, and R. Pfeffer, J. Fluid Mech. 55, 677 (1972).
12. W.H. Liao and D.A. Krueger, J. Fluid Mech. 96, 223 (1980).
13. Q. Hassonjee, P. Ganatos, and R. Pfeffer, J. Fluid Mech. 197, 1 (1988).
14. I.L. Claeys and J.F. Brady, J. Fluid Mech. 251, 411 (1993).
15. A.J.C. Ladd, J. Chem. Phys. 93, 3484 (1990).
16. A.S. Sangani and G. Mo, Phys. Fluids 8, 1990 (1996).
17. B. Cichocki, B.U. Felderhof, K. Hinsen, E. Wajnryb, and J. Blawzdziewicz, J. Chem. Phys. 100, 3780 (1994).
18. J. Rotne and S. Prager, J. Chem. Phys. 50, 4831 (1969).
19. J.F. Brady and G. Bossis, Annu. Rev. Fluid Mech. 20, 111 (1988).
20. S. Bhattacharya and J. Blawzdziewicz, J. Math. Phys. 43, 5720 (2002).
21. J.P. Ryckaert, G. Ciccotti, and H.J.C. Berendsen, J. Comput. Phys. 23, 327 (1977).
22. R. Kutteh and T. P. Straatsma, in Reviews in Computational Chemistry, edited by K.B. Lipkowitz and D.B. Boyd (Wiley, New York, 1998), Vol. 12.
23. A HSHAKE FORTRAN routine for a system of spheres with distance, angle, and torsion constraints, and possibly unconstrained spheres, usable with any algorithm for computing the hydrodynamic mobility matrix of spheres, is available from the author. Its iterative first part serves alternatively as a drift correction scheme for the direct method of Sec. II.
24. J. Happel and H. Brenner, Low Reynolds Number Hydrodynamics (Prentice-Hall, New Jersey, 1965).
25. R. Kutteh, J. Chem. Phys. 111, 1394 (1999).
26. R. Kutteh, Comput. Phys. Commun. 119, 159 (1999).
27. R. Kutteh and R.B. Jones, Phys. Rev. E 61, 3186 (2000).
28. S.A. Allison and J.A. McCammon, Biopolymers 23, 167 (1984).
29. H.C. Öttinger, Phys. Rev. E 50, 2696 (1994).
30. E.B. Wilson, Jr., J.C. Decius, and P.C. Cross, Molecular Vibrations (Dover, New York, 1955).
31. S. Kim, Int. J. Multiphase Flow 11, 699 (1985).
32. R. Hsu and P. Ganatos, J. Fluid Mech. 268, 267 (1994).
33. H. Binous and R.J. Phillips, J. Non-Newtonian Fluid Mech. 85, 63 (1999).
34. G.K. Batchelor, J. Fluid Mech. 44, 419 (1970).
35. H. Brenner, J. Fluid Mech. 12, 35 (1962).
36. G. Bossis, A. Meunier, and J.D. Sherwood, Phys. Fluids A 3, 1853 (1991).
37. A. Meunier, J. Phys. II 4, 561 (1994).
38. S. Fraden, A.J. Hurd, and R.B. Meyer, Phys. Rev. Lett. 63, 2373 (1989).
39. M.C. Miguel and J.M. Rubi, J. Chem. Phys. 110, 6007 (1999).
40. R. Kutteh, J. Chem. Phys. 119, 9280 (2003).