Use of single nucleotide polykorphism arrays to identify a novel region of loss on chromosome 6q in squamous cell carcinomas of the oral cavity

Head and Neck

Volumn 26, Issue 4, 2004, Pages 345-352

  Tong, Betty C ^a,b   Dhir, Karan ^a   Ha, Patrick K ^a   Westra, William H ^b   Alter, Blanche P ^c   Sidransky, David ^a   Koch, Wayne M ^a   Califano, Joseph A ^a  

^a JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b JOHNS HOPKINS HOSPITAL   (United States)

^c NATIONAL CANCER INSTITUTE   (United States)

Author keywords

Chromosome 6q; Oral cavity; Single nucleotide polymorphism; Squamous cell carcinoma

Indexed keywords

MICROSATELLITE DNA; DNA;

ADULT; AGED; ALLELE; ARTICLE; CANCER PATIENT; CHROMOSOME 6Q; CHROMOSOME ARM; CHROMOSOME LOSS; CLINICAL ARTICLE; CONTROLLED STUDY; DNA DETERMINATION; DNA MICROARRAY; FANC C GENE; FEMALE; GENE; GENE SEQUENCE; GENOME; HIGH THROUGHPUT SCREENING; HUMAN; HUMAN TISSUE; MALE; MICROANALYSIS; MOUTH CARCINOMA; MOUTH CAVITY; MUTATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; QUANTITATIVE GENETICS; SINGLE NUCLEOTIDE POLYMORPHISM; SMOKING HABIT; SQUAMOUS CELL CARCINOMA; WART VIRUS; ALLELIC IMBALANCE; CHROMOSOME 6; CHROMOSOME MAP; COMPARATIVE STUDY; GENETICS; MIDDLE AGED; MOUTH TUMOR; SMOKING;

ADULT; AGED; AGED, 80 AND OVER; ALLELIC IMBALANCE; CARCINOMA, SQUAMOUS CELL; CHROMOSOME MAPPING; CHROMOSOMES, HUMAN, PAIR 6; DNA, NEOPLASM; HUMANS; MICROSATELLITE REPEATS; MIDDLE AGED; MOUTH NEOPLASMS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMORPHISM, SINGLE NUCLEOTIDE; SMOKING;

EID: 1842579126     PISSN: 10433074     EISSN: None     Source Type: Journal    
DOI: 10.1002/hed.10391     Document Type: Article

References (16)

1. Nawroz H, van der Riet P, Hruban RH, Koch W, Ruppert JM, Sidransky D. Allelotype of head and neck squamous cell carcinoma. Cancer Res 1994;54:1152-1155.
2. Koch WM, Lango M, Sewell D, Zahurak M, Sidransky D. Head and neck cancer in nonsmokers: a distinct clinical and molecular entity. Laryngoscope 1999;109:1544-1551.
3. Mork J, Lie AK, Glattre E, et al. Human papillomavirus infection asa as a risk factor for squamous-cell carcinoma of the head and neck. N Engl J Med 2001;344:1125-1131.
4. Klussmann JP, Weissenborn S, Fuchs PG. Human papillomavirus infection as a risk factor for squamous-cell carcinoma of the head and neck. N Engl J Med 2001;345:376; discussion 377.
5. Gillison ML, Koch WM, Capone RB, et al. Evidence for a causal association between human papillomavirus and a subset of head and neck cancers. J Natl Cancer Inst 2000;92:709-720.
6. Ha PK, Pai SI, Westra WH, et al. Real-time quantitative PCR demonstrates low prevalence of human papillomavirus type 16 in premalignant and malignant lesions of the oral cavity. Clin Cancer Res 2002;8:1203-1209.
7. Alter BP. Fanconi's anemia and malignancies. Am J Hematol 1996;53:99-110.
8. Oksuzoglu B, Yalcin S. Squamous cell carcinoma of the tongue in a patient with Fanconi's anemia: a case report and review of the literature. Ann Hematol 2002;81:294-298.
9. Whitney MA, Saito H, Jakobs PM, Gibson RA, Moses RE, Grompe M. A common mutation in the FACC gene causes Fanconi anaemia in Ashkenazi Jews. Nat Genet 1993;4:202-205.
10. Lindblad-Toh K, Tanenbaum DM, Daly MJ, et al. Loss-of-heterozygosity analysis of small-cell lung carcinomas using single-nucleotide polymorphism arrays. Nat Biotechnol 2000;18:1001-1005.
11. Mei R, Galipeau PC, Prass C, et al. Genome-wide detection of allelic imbalance using human SNPs and high-density DNA arrays. Genome Res 2000;10:1126-1137.
12. Jin C, Jin Y, Wennerberg J, Dictor M, Mertens F. Nonrandom pattern of cytogenetic abnormalities in squamous cell carcinoma of the larynx. Genes Chromosomes Cancer 2000;28:66-76.
13. Jin YS, Mandahl N, Heim S, Biorklund A, Wennerberg J, Mitelman F. t(6;7)(q23;p22) as the sole chromosomal anomaly in a vocal cord carcinoma. Cancer Genet Cytogenet 1988;32:305-307.
14. Jin YS, Heim S, Mandahl N, Biorklund A, Wennerberg J, Mitelman F. Multiple clonal chromosome aberrations in squamous cell carcinomas of the larynx. Cancer Genet Cytogenet 1990;44:209-216.
15. Maestro R, Gasparotto D, Vukosavljevic T, Barzan L, Sulfaro S, Boiocchi M. Three discrete regions of deletion at 3p in head and neck cancers. Cancer Res 1993;53:5775-5779.
16. Wu CL, Roz L, Sloan P, et al. Deletion mapping defines three discrete areas of allelic imbalance on chromosome arm 8p in oral and oropharyngeal squamous cell carcinomas. Genes Chromosomes Cancer 1997;20:347-353.