Fractal analysis of measure representation of large proteins based on the detailed HP model

Physica A: Statistical Mechanics and its Applications

Volumn 337, Issue 1-2, 2004, Pages 171-184

  Yu, Zu Guo ^a,b   Anh, Vo ^a   Lau, Ka Sing ^c  

^a QUEENSLAND UNIVERSITY OF TECHNOLOGY   (Australia)

^b XIANGTAN UNIVERSITY   (China)

^c CHINESE UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

Analogous specific heat; Detrended fluctuation analysis; IFS model; Measure representation; Multifractal analysis

Indexed keywords

AMINO ACIDS; COMPUTER SIMULATION; CONFORMATIONS; FRACTALS; HYDROPHOBICITY; MATHEMATICAL MODELS; POLYPEPTIDES; PROBABILITY DISTRIBUTIONS;

ANALOGOUS SPECIFIC HEAT; DETRENDED FLUCTUATION ANALYSIS; IFS MODEL; MEASURE REPRESENTATION; MULTIFRACTAL ANALYSIS;

PROTEINS;

EID: 1842563797     PISSN: 03784371     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.physa.2004.01.057     Document Type: Article

References (37)

1. Chothia C. Nature (London). 357:1992;543-544.
2. Shih C.T., Su Z.Y., Gwan J.F., Hao B.L., Hsieh C.H., Lee H.C. Phys. Rev. Lett. 84(2):2000;386-389.
3. Anfinsen C. Science. 181:1973;223.
4. Shih C.T., Su Z.Y., Gwan J.F., Hao B.L., Hsieh C.H., Lee H.C. Phys. Rev. E. 65:2002;041923.
5. Dill K.A. Biochemistry. 24:1985;1501 Chan H.S., Dill K.A. Macromolecules. 22:1989;4559.
6. Dill K.A. Biochemistry. 24:1985;1501 Chan H.S., Dill K.A. Macromolecules. 22:1989;4559.
7. Li H., Helling R., Tang C., Wingreen N.S. Science. 273:1996;666.
8. Wang B., Yu Z.G. J. Chem. Phys. 112:2000;6084-6088.
9. Micheletti C., Banavar J.R., Maritan A., Seno F. Phys. Rev. Lett. 80:1998;5683.
10. Wang J., Wang W. Phys. Rev. E. 61:2000;6981-6986.
11. Brown T.A. Genetics. 3rd Edition:1998;Chapman & Hill, London.
12. Mandelbrot B.B. The Fractal Geometry of Nature. 1983;Academic Press, New York.
13. Feder J. Fractals. 1988;Plenum Press, New York.
14. Grassberger P., Procaccia I. Phys. Rev. Lett. 50:1983;346.
15. Yu Z.G., Anh V.V., Lau K.S. Phys. Rev. E. 64:2001;031903.
16. Yu Z.G., Anh V.V., Wang B. Phys. Rev. E. 63:2001;011903.
17. Peng C.K., Buldyrev S., S. Havlin A.L.Goldberg, Sciortino F., Simons M., Stanley H.E. Nature. 356:1992;168.
18. Dewey T.G. J. Chem. Phys. 98:1993;2250.
19. Pfiefer P., Welz U., Wipperman H. Chem. Phys. Lett. 113:1985;535.
20. Fedorov B.A., Fedorov B.B., Schmidt P.W. J. Chem. Phys. 99:1993;4076.
21. Lewis M., Rees D.C. Science. 230:1985;1163.
22. Lidar D.A., Thirumalai D., Elber R., Gerber R.B. Phys. Rev. E. 59:1999;2231.
23. Balafas J.S., Dewey T.G. Phys. Rev. E. 52:1995;880.
24. Pande V.S., Grosberg A.Y., Tanaka T. Proc. Natl. Acad. Sci. USA. 91:1994;12972.
25. Strait B.J., Dewey T.G. Phys. Rev. E. 52:1995;6588.
26. Goldberger A.L., Peng C.K., Hausdorff J., Mietus J., Havlin S., Stanley H.E. Fractals and the Heart. Iannaccone P.M., Khokha M. Fractal Geometry in Biological Systems. 1996;249-266 CRC Press, Inc. Boca Raton.
27. Anh V., Lau K.S., Yu Z.G. J. Phys. A: Math. Gene. 34:2001;7127-7139.
28. Barnsley M.F., Demko S. Proc. R. Soc. London A. 399:1985;243.
29. Halsey T., Jensen M., Kadanoff L., Procaccia I., Schraiman B. Phys. Rev. A. 33:1986;1141.
30. Katzen D., Procaccia I. Phys. Rev. Lett. 58:1987;1169.
31. Bohr T., Jensen M. Phys. Rev. A. 36:1987;4904.
32. Lee J., Stanley H.E. Phys. Rev. Lett. 61:1988;2945.
33. Canessa E. J. Phys. A: Math. Gen. 33:2000;3637.
34. Anh V.V., Lau K.S., Yu Z.G. Recognition of an organism from fragments of its complete genome. Phys. Rev. E. 66:2002;031910.
35. Vrscay E.R. Belair J. Fractal Geometry and Analysis. NATO ASI Series. 1991;Kluwer Academic Publishers, Dordrecht.
36. Russell R.B. Webster D. Protein Structure Prediction: Methods and Protocols. 2000;Humana Press Inc. Totowa, NJ.
37. Yu Z.G., Anh V.V., Lau K.S. Chaos game representation, and multifractal and correlation analysis of protein sequences from complete genome based on detailed HP model. J. Theor. Biol. 226(3):2004;341-348.