Dominant spectral component analysis for transcriptional regulations using microarray time-series data

Bioinformatics

Volumn 20, Issue 5, 2004, Pages 742-749

  Yeung, Lap Kun ^a   Szeto, Lap Keung ^a   Liew, Alan Wee Chung ^a   Yan, Hong ^a,b  

^a CITY UNIVERSITY OF HONG KONG   (Hong Kong)

^b UNIVERSITY OF SYDNEY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; CELL CYCLE; CONTROLLED STUDY; CORRELATION COEFFICIENT; DNA MICROARRAY; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETIC IDENTIFICATION; GENETIC REGULATION; MATHEMATICAL COMPUTING; MATHEMATICAL MODEL; NONHUMAN; PRIORITY JOURNAL; SPECTROSCOPY; TIME SERIES ANALYSIS; TRANSCRIPTION REGULATION; YEAST CELL;

EID: 1842559837     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg479     Document Type: Article

References (8)

1. DeRisi,J., Iyer,R. and Brown,P. (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science, 278, 680-686.
2. Eisen,M., Spellman,P., Brown,P. and Botstein,D. (1998) Cluster analysis and display of genome-wide expression patterns. PNAS, 95, 14863-14868.
3. Filkov,V., Skiena,S. and Zhi,J. (2002) Analysis techniques for microarray time-series data. J. Comput. Biol., 9, 317-330.
4. Friedman,N., Linial,M., Nachman,I. and Péer,D. (2000) Using Bayesian networks to analyze expression data. J. Comput. Biol., 7, 601-620.
5. Kwon,A., Hoos,H. and Ng,R. (2003) Inference of transcriptional regulation relationships from gene expression data. Bioinformatics, 19, 905-912.
6. Marple,S. (1987) Digital Spectral Analysis with Applications. Prentice Hall, Englewood Cliffs, NJ.
7. Spellman,P., Sherlock,G., Zhang,M., Iyer,V., Anders,K., Eisen,M., Brown,P., Botstein,D. and Futcher,B. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell, 9, 3273-3297.
8. Yan,H. (2002) Signal Processing for Magnetic Resonance Imaging and Spectroscopy. Marcel Dekker, New York.