tRNA-Like Structure Regulates Translation of Brome Mosaic Virus RNA

Journal of Virology

Volumn 78, Issue 8, 2004, Pages 4003-4010

  Barends, Sharief ^a,b   Rudinger Thirion, Joëlle ^a   Florentz, Catherine ^a   Giegé, Richard ^a   Pleij, Cornelis W A ^b   Kraal, Barend ^b  

^a INST DE BIOL MOLEC ET CELLULAIRE   (France)

^b LEIDEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID TRANSFER RNA LIGASE; COAT PROTEIN; TRANSFER RNA; VIRUS RNA;

ARTICLE; CATALYSIS; MOSAIC VIRUS; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; RNA STRUCTURE; TRANSLATION REGULATION; VIRUS GENOME; VIRUS TRANSCRIPTION;

BASE SEQUENCE; BROMOVIRUS; GENETIC COMPLEMENTATION TEST; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PROTEIN BIOSYNTHESIS; RNA, TRANSFER; RNA, VIRAL; TRITICUM; TYROSINE; TYROSINE-TRNA LIGASE; VIRAL PROTEINS;

EID: 1842536801     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.78.8.4003-4010.2004     Document Type: Article

References (35)

1. Ahlquist, P., R. Dasgupta, and P. Kaesberg. 1981. Near identity of 3′ RNA secondary structure in bromoviruses and cucumber mosaic virus. Cell 23:183-189.
2. Ali, I. K., L. McKendrick, S. J. Morley, and R. J. Jackson. 2001. Truncated initiation factor eIF4G lacking an eIF4E binding site can support capped mRNA translation. EMBO J. 20:4233-4242.
3. Barends, S., H. H. J. Bink, S. H. E. van den Worm, C. W. A. Pleij, and B. Kraal. 2003. Entrapping ribosomes for viral translation: tRNA mimicry as a molecular Trojan horse. Cell 112:123-129.
4. Bink, H. H. J., K. Hellendoorn, J. van der Meulen, and C. W. A. Pleij. 2002. Protonation of non-Watson-Crick base pairs and encapsidation of turnip yellow mosaic virus RNA. Proc. Natl. Acad. Sci. USA 99:13465-13470.
5. Bol, J. F. 2003. Alfalfa mosaic virus: coat protein-dependent initiation of infection. Mol. Plant Pathol. 4:1-8.
6. Bujarski, J. J., T. W. Dreher, and T. C. Hall. 1985. Deletions in the 3′-terminal tRNA-like structure of brome mosaic virus RNA differentially affect aminoacylation and replication in vitro. Proc. Natl. Acad. Sci. USA 82:5636-5640.
7. Choi, Y. G., T. W. Dreher, and A. L. Rao. 2002. tRNA elements mediate the assembly of an icosahedral RNA virus. Proc. Natl. Acad. Sci. USA 99:655-660.
8. Dreher, T. W. 1999. Functions of the 3′-untranslated regions of positive strand RNA viral genomes. Annu. Rev. Phytopathol. 37:151-174.
9. Dreher, T. W., and T. C. Hall. 1988. Mutational analysis of the tRNA mimicry of brome mosaic virus RNA. Sequence and structural requirements for aminoacylation and 3′-adenylation. J. Mol. Biol. 210:41-55.
10. Fechter, P., J. Rudinger-Thirion, C. Florentz, and R. Giegé. 2001. Novel features in the tRNA-like world of plant viral RNAs. Cell Mol. Life Sci. 58:1547-1561.
11. Fechter, P., R. Giegé, and J. Rudinger-Thirion. 2001. Specific tyrosylation of the bulky tRNA-like structure of brome mosaic virus RNA relies solely on identity nucleotides present in its amino acid-accepting domain. J. Mol. Biol. 309:387-399.
12. Felden, B., C. Florentz, R. Giegé, and E. Westhof. 1994. Solution structure of the 3′-end of brome mosaic virus genomic RNAs. Conformational mimicry with canonical tRNAs. J. Mol. Biol. 235:508-531.
13. Gallie, D. R., and M. Kobayashi. 1994. The role of the 3′-untranslated region of non-polyadenylated plant viral mRNAs in regulating translational efficiency. Gene 142:159-165.
14. Gallie, D. R. 2002. Protein-protein interactions required during translation. Plant Mol. Biol. 50:949-970.
15. Guo, L., E. M. Allen, and W. A. Miller. 2001. Base-pairing between untranslated regions facilitates translation of uncapped, nonpolyadenylated viral RNA. Mol. Cell 7:1103-1109.
16. Hall, T. C., D. S. Shih, and P. Kaesberg. 1972. Enzyme mediated binding of tyrosine to brome mosaic virus ribonucleic acid. Biochem. J. 129:969-976.
17. Janda, M., R. French, and P. Ahlquist. 1987. High efficiency T7 polymerase synthesis of infectious RNA from cloned brome mosaic virus cDNA and effects of 5′ extensions on transcript infectivity. Virology 158:259-262.
18. Kern, D., B. Lorber, Y. Boulanger, and R. Giegé. 1985. A peculiar property of aspartyl-tRNA synthetase from bakers' yeast: chemical modification of the protein by the enzymatically synthesized aminoacyl adenylate. Biochemistry 24:1321-1332.
19. Lahser, F. C., L. E. Marsh, and T. C. Hall. 1993. Contributions of the brome mosaic virus RNA-3 3′-nontranslated region to replication and translation. J. Virol. 67:3295-3303.
20. Ling, J., S. J. Morley, V. M. Pain, W. F. Marzluff, and D. R. Gallie. 2002. The histone 3′-terminal stem-loop-binding protein enhances translation through a functional and physical interaction with eukaryotic initiation factor 4G (eIF4G) and eIF3. Mol. Cell. Biol. 22:7853-7867.
21. Loesch-Fries, L. S., and T. C. Hall. 1982. In vivo aminoacylation of brome mosaic and barley stripe mosaic virus RNAs. Nature 298:771-773.
22. Mans, R. M. W., C. W. A. Pleij, and L. Bosch. 1991. tRNA-like structures: structure, function and evolutionary significance. Eur. J. Biochem. 201:303-324.
23. Mazumder, B., V. Seshadri, and P. L. Fox. 2003. Translational control by the 3′-UTR: the ends specify the means. Trends Biochem. Sci. 28:91-98.
24. Neeleman, L., R. C. L. Olsthoorn, H. J. M. Linthorst, and J. F. Bol. 2001. Translation of a nonpolyadenylated viral RNA is enhanced by binding of viral coat protein or polyadenylation of the RNA. Proc. Natl. Acad. Sci. USA 98:14286-14291.
25. Neeleman, L., H. J. M. Linthorst, and J. F. Bol. 2004. Efficient translation of alfamovirus RNAs requires the binding of coat protein dimers to the 3′ termini of the viral RNAs. J. Gen. Virol. 85:231-240.
26. Noueiry, A. O., and P. Ahlquist. 2003. Brome mosaic virus RNA replication: revealing the role of the host in RNA virus replication. Annu. Rev. Phytopathol. 41:77-98.
27. Noueiry, A. O., J. Diez, S. P. Falk, J. Chen, and P. Ahlquist. 2003. Yeast Lsm1p-7p/Pat1p deadenylation-dependent mRNA-decapping factors are required for brome mosaic virus genomic RNA translation. Mol. Cell. Biol. 23:4094-4106.
28. Olsthoorn, R. C. L., S. Mertens, F. T. Brederode, and J. F. Bol. 1999. A conformational switch at the 3′ end of a plant virus RNA regulates viral replication. EMBO J. 18:4856-4864.
29. Quadt, R., C. C. Kao, K. S. Browning, R. P. Hershberger, and P. Ahlquist. 1993. Characterization of a host protein associated with brome mosaic virus RNA-dependent RNA polymerase. Proc. Natl. Acad. Sci. USA 90:1498-1502.
30. Rietveld, K., C. W. A. Pleij, and L. Bosch. 1983. Three-dimensional models of the tRNA-like 3′ termini of some plant viral RNAs. EMBO J. 2:1079-1085.
31. Sanchez, R., and W. F. Marzluff. 2002. The stem-loop binding protein is required for efficient translation of histone mRNA in vivo and in vitro. Mol. Cell. Biol. 22:7093-7104.
32. Sivakumaran, K., K. Hema, and C. Cheng Kao. 2003. Brome mosaic virus RNA syntheses in vitro and in barley protoplasts. J. Virol. 77:5703-5711.
33. Vlot, A. C., L. Neeleman, H. J. M. Linthorst, and J. F. Bol. 2001. Role of the 3′-untranslated regions of alfalfa mosaic virus RNAs in the formation of a transiently expressed replicase in plants and in the assembly of virions. J. Virol. 75:6440-6449.
34. Wilkie, G. S., K. S. Dickson, and N. K. Gray. 2003. Regulation of mRNA translation by 5′- and 3′-UTR-binding factors. Trends Biochem. Sci. 28:182-188.
35. Zeenko, V. V., L. A. Ryabova, A. S. Spirin, H. M. Rothnie, D. Hess, K. S. Browning, and T. Hohn. 2002. Eukaryotic elongation factor 1A interacts with the upstream pseudoknot domain in the 3′ untranslated region of tobacco mosaic virus RNA. J. Virol. 76:5678-5691.