High-Performance Computing Service Over the Internet for Intraoperative Image Processing

IEEE Transactions on Information Technology in Biomedicine

Volumn 8, Issue 1, 2004, Pages 36-46

  Kawasaki, Yasuhiro ^a   Ino, Fumihiko ^a   Mizutani, Yasuharu ^a   Fujimoto, Noriyuki ^a   Sasama, Toshihiko ^b   Sato, Yoshinobu ^a   Sugano, Nobuhiko ^a   Tamura, Shinichi ^a   Hagihara, Kenichi ^a  

^a OSAKA UNIVERSITY   (Japan)

^b TOTTORI UNIVERSITY   (Japan)

Author keywords

Cluster computing; Computer assisted surgery; High performance computing; Medical image processing; Message passing program; Range of motion (ROM) estimation

Indexed keywords

COMPUTATION THEORY; COMPUTERIZED TOMOGRAPHY; IMAGE PROCESSING; INTERNET; SUPERCOMPUTERS; SURGERY;

CLUSTER COMPUTING; COMPUTER-ASSISTED SURGERY;

MEDICAL IMAGING;

ARTICLE; COMPARATIVE STUDY; COMPUTER ANALYSIS; COMPUTER ASSISTED DIAGNOSIS; COMPUTER ASSISTED SURGERY; EVALUATION; HIP; HIP ARTHROPLASTY; HUMAN; IMAGE QUALITY; INSTRUMENTATION; INTERNET; METHODOLOGY; ONLINE SYSTEM; PATIENT MONITORING; RADIOGRAPHY; TELEMEDICINE; THREE DIMENSIONAL IMAGING;

ARTHROPLASTY, REPLACEMENT, HIP; COMPUTING METHODOLOGIES; HIP JOINT; HUMANS; IMAGING, THREE-DIMENSIONAL; INTERNET; MONITORING, INTRAOPERATIVE; ONLINE SYSTEMS; RADIOGRAPHIC IMAGE ENHANCEMENT; RADIOGRAPHIC IMAGE INTERPRETATION, COMPUTER-ASSISTED; SURGERY, COMPUTER-ASSISTED; TELEMEDICINE;

EID: 1842483149     PISSN: 10897771     EISSN: None     Source Type: Journal    
DOI: 10.1109/TITB.2004.824740     Document Type: Review

References (47)

1. S. Martelli, R. E. Ellis, M. Marcacci, and S. Zaffagnini, "Total knee replacement kinematics: Computer simulation and intraoperative evaluation," J. Arthroplasty, vol. 13, no. 2, pp. 145-155, Feb. 1998.
2. R. E. Ellis, C. Y. Tso, J. F. Rudan, and M. M. Harrison, "A surgical planning and guidance system for high tibial osteotomy," Comput. Aided Surgery, vol. 4, no. 5, pp. 264-274, 1999.
3. B. Ma and R. E. Ellis, "Robust registration for computer-integrated orthopedic surgery: Laboratory validation and clinical experience," Med. Image Anal., vol. 7, no. 3, pp. 237-250, Sept. 2003.
4. A. M. DiGioia, B. Jaramaz, M. Blackwell, D. A. Simon, F. Morgan, J. E. Moody, C. Nikou, B. D. Colgan, C. A. Astion, R. S. Labarca, E. Kischell, and T. Kanade, "Image guided navigation system to measure intraoperatively acetabular implant alignment," Clin. Orthop. Related Res., vol. 355, pp. 8-22, Oct. 1998.
5. B. Jaramaz, A. M. DiGioia, M. Blackwell, and C. Nikou, "Computer assisted measurement of cup placement in total hip replacement," Clin. Orthop. Related Res., vol. 354, pp. 70-81, Sept. 1998.
6. Y. Sato, T. Sasama, N. Sugano, K. Nakahodo, T. Nishii, K. Ohzono, K. Yonenobu, T. Ochi, and S. Tamura, "Intraoperative simulation and planning using a combined acetabular and femoral (CAP) navigation system for total hip replacement," in Proc. 3rd Int. Conf. Medical Image Computing and Computer-Assisted Intervention (MICCAI'00), Oct. 2000, pp. 1114-1125.
7. T. E. Anderson, D. E. Culler, and D. A. Patterson, "A case for NOW (Networks of workstations)," IEEE Micro, vol. 15, pp. 54-64, Jan. 1995.
8. T. Sterling, D. Savarese, D. J. Becker, J. E. Dorband, U. A. Ranawake, and C. V. Packer, "BEOWULF: A parallel workstation for scientific computation," in Proc. 24th Int. Conf. Parallel Processing (ICPP'95), Aug. 1995, pp. 11-14.
9. F. Ino, K. Ooyama, Y. Kawasaki, A. Takeuchi, Y. Mizutani, J. Masumoto, Y. Sato, N. Sugano, T. Nishii, H. Miki, H. Yoshikawa, K. Yonenobu, S. Tamura, T. Ochi, and K. Hagihara, "A high performance computing service over the internet for nonrigid image registration," in Proc. Computer Assisted Radiology and Surgery: 17th Int. Congr. and Exhibition (CARS'03), June 2003, pp. 193-199.
10. F. Ino, K. Ooyama, A. Takeuchi, and K. Hagihara, "Design and implementation of parallel nonrigid image registration using off-the-shelf supercomputers," in Proc. 6th Int. Conf. Medical Image Computing and Computer-Assisted Intervention (MICCAI'03), Pt. I, Nov. 2003, pp. 327-334.
11. A. Takeuchi, F. Ino, and K. Hagihara, "An improved binary-swap compositing for sort-last parallel rendering on distributed memory multi-processors," Parallel Comput., vol. 29, no. 11/12, pp. 1745-1762, Nov. 2003.
12. S. K. Warfield, F. A. Jolesz, and R. Kikinis, "Real-time image segmentation for image-guided surgery," in Proc. High Performance Networking and Computing Conf. (SC98), Nov. 1998.
13. _, "A high performance computing approach to the registration of medical imaging data," Parallel Comput., vol. 24, no. 9/10, pp. 1345-1368, 1998.
14. S. K. Warfield, M. Ferrant, X. Gallez, A. Nabavi, F. A. Jolesz, and R. Kikinis, "Real-time biomechanical simulation of volumetric brain deformation for image guided neurosurgery," in Proc. High Performance Networking and Computing Conf. (SC2000), Nov. 2000.
15. T. Rohlfing and C. R. Maurer, "Nonrigid image registration in shared-memory multiprocessor environments with application to brains, breasts, and bees," IEEE Trans. Inform. Technol. Biomed., vol. 7, pp. 16-25, Mar. 2003.
16. S. Ourselin, R. Stefanescu, and X. Pennec, "Robust registration of multimodal images: Toward real-time clinical applications," in Proc. 5th Int. Conf. Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), Pt. II, Sept. 2002, pp. 140-147.
17. H. Liao, N. Hata, M. Iwahara, S. Nakajima, I. Sakuma, and T. Dohi, "High-resolution stereoscopic surgical display using parallel integral videography and multi-projector," in Proc. 5th Int. Conf. Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), Pt. II, Sept. 2002, pp. 85-92.
18. R. Buyya, Ed., High Performance Cluster Computing. Englewood Cliffs, NJ: Prentice-Hall PTR, 1999.
19. I. Foster and C. Kesselman, Eds., The Grid: Blueprint of a New Computing Infrastructure. San Mateo, CA: Morgan Kaufmann, 1998.
20. S. Hastings, T. Kurc, S. Langella, U. Catalyurek, T. Pan, and J. Saltz, "Image processing for the grid: A toolkit for building grid-enabled image processing applications," in Proc. 3rd IEEE/ACM Int. Symp. Cluster Computing and the Grid (CCGrid'03), May 2003, pp. 36-43.
21. I. Foster and C. Kesselman, "Globus: A metacomputing infrastructure toolkit," Int. J. Supercomput, Applic. High Performance Comput., vol. 11, no. 2, pp. 115-128, 1997.
22. Y. Mizuno-Matsumoto, S. Date, Y. Tabuchi, S. Tamura, Y. Sato, R. A. Zoroofi, S. Shimojo, Y. Kadobayashi, H. Tatsumi, H. Nogawa, K. Shinosaki, M. Takeda, T. Jnouye, and H. Miyahara, "Telemedicine for evaluation of brain function by a metacomputer," IEEE Trans. Inform. Technol. Biomed., vol. 4, pp. 165-172, June 2000.
23. A. Norton and A. Rockwood, "Enabling view-dependent progressive volume visualization on the grid," IEEE Comput. Graph. Appl., vol. 23, pp. 22-31, Mar. 2003.
24. M. Ferrant, A. Nabavi, B. Macq, P. M. Black, F. A. Jolesz, R. Kikinis, and S. K. Warfield, "Serial registration of intraoperative MR images of the brain," Med. Image Anal., vol. 6, no. 4, pp. 337-359, 2002.
25. M. Ferrant, A. Nabavi, B. Macq, F. A. Jolesz, R. Kikinis, and S. K. Warfield, "Registration of 3-D intraoperative MR images of the brain using a finite-element biomechanical model," IEEE Trans. Med. Imag., vol. 20, pp. 1384-1397, Dec. 2001.
26. S. K. Warfield, F. Talos, A. Tei, A. Bharatha, A. Nabavi, M. Ferrant, P. M. Black, F. A. Jolesz, and R. Kikinis, "Real-time registration of volumetric brain MRI by biomechanical simulation of deformation during image guided surgery," Comput. Visualiz, in Sci., vol. 5. no. 1, pp. 3-11, July 2002.
27. M. Weiser, "The computer for the twenty-first century," Scientific Amer., pp. 94-104, Sept. 1991.
28. H. Stern, M. Eisler, and R. Labiaga, Managing NFS and NIS, 2nd ed. Sebastopol, CA: O'Reilly Assoc. Inc., 2001.
29. N. J. Boden, D. Cohen, R. E. Felderman, A. E. Kulawik, C. L. Seitz, J. N. Seizovic, and W.-K. Su, "Myrinet: A gigabit-per-second local-area network," IEEE Micro, vol. 15, pp. 29-36, Feb. 1995.
30. PC Cluster Consortium. (2003) SCore Cluster System Software. [Online]. Available: http://www.pccluster.org/
31. A. Hori, H. Tezuka, and Y. Ishikawa, "Highly efficient gang scheduling implementation," in Proc. High Performance Networking and Computing Conf. (SC98), Nov. 1998.
32. "MPI: A message-passing interface standard," Int. J. Supercomput. Applic., vol. 8, no. 3/4, pp. 159-416, 1994.
33. F. O'Carroll, H. Tezuka, A. Hori, and Y. Ishikawa, "The design and implementation of zero copy MPI using commodity hardware with a high performance network," in Proc. 12th ACM Int. Conf. Supercomputing (ICS'98), July 1998, pp. 243-250.
34. OpenSSL Project. (2003) OpenSSL: The Open Source Toolkit for SSL/TSL. [Online]. Available: http://www.openssl.org/
35. R. Housley, W. Ford, W. Polk, and D. Solo. (1999) Internet X.509 Public Key Infrastructure Certificate and CRL Profile. IETF. [Online] RFC 2459
36. M. F. X. J. Oberhumer. (2003) LZO Data Compression Library. [Online]. Available: http://www.oberhumer.com/opensource/lzo/
37. J.-L. Gailly and M. Adler. (2003) Zlib General Purpose Compression Library. [Online]. Available: http://www.gzip.org/zlib/
38. W. E. Lorensen and H. E. Cline, "Marching cubes: A high resolution 3D surface construction algorithm," in Computer Graphics (Proc. SIGGRAPH'87), vol. 21, July 1987, pp. 163-169.
39. Northern Digital, Inc. (2003) OPTOTRAK. [Online]. Available: http://www.ndigital.com/optotrak.html
40. J. V. Hajnal, D. L. Hill, and D. J. Hawkes, Eds., Medical Image Registration. Boca Raton, FL: CRC, 2001.
41. P. J. Besl and N. D. McKay, ''A method for registration of 3-D shapes," IEEE Trans. Pattern Anal. Machine Intell., vol. 14, pp. 239-256, Feb. 1992.
42. N. Sugano, T. Sasama, Y. Sato, Y. Nakajima, T. Nishii, K. Yonenobu, S. Tamura, and T. Ochi, "Accuracy evaluation of surface-based registration methods in a computer navigation system for hip surgery performed through a posterolateral approach," Comput. Aided Surgery, vol. 6, no. 4, pp. 195-203, 2001.
43. T. C. Hudson, M. C. Lin, J. Cohen, S. Gottschalk, and D. Manocha, "V-COLLIDE: Accelerated collision detection for VRML," in Proc. 2nd Symp. Virtual Reality Modeling Language (VRML'97), Feb. 1997, pp. 117-124.
44. M. K. Ponamgi, D. Manocha, and M. C. Lin, "Incremental algorithms for collision detection between polygonal models," IEEE Trans. Visual. Comput. Graph., vol. 3, pp. 51-64, Jan. 1997.
45. W. Schroeder, K. Martin, and B. Lorensen, Eds., The Visualization Toolkit: An Object-Oriented Approach to 3-D Graphics, 2nd ed. Englewood Cliffs, NJ: Prentice-Hall PTR, 1998.
46. K. Nakahodo, T. Sasama, Y. Sato, N. Sugano, K. Ohzono, T. Nishii, S. Nishihara, K. Yonenobu, T. Ochi, and S. Tamura, "Intraoperative update of 3-D bone model during computer navigation of pelvic osteotomies using real-time 3-D position data," in Proc. Computer Assisted Radiology and Surgery: 14th Int. Congr. and Exhibition (CARS'00), June 2000, pp. 252-256.
47. R. Chandra, L. Dagum, D. Kohr, D. Maydan, J. McDonald, and R. Menon, Parallel Programming in OpenMP. San Mateo, CA: Morgan Kaufmann, 2000.