-
1
-
-
0037168445
-
Ribozyme-Catalyzed Excision of Targeted Sequences from within RNAs
-
Bell, M. A., Johnson, A. K., and Testa, S. M. (2002) Ribozyme-Catalyzed Excision of Targeted Sequences from within RNAs, Biochemistry 41, 15327-15333.
-
(2002)
Biochemistry
, vol.41
, pp. 15327-15333
-
-
Bell, M.A.1
Johnson, A.K.2
Testa, S.M.3
-
2
-
-
0030720935
-
A Pneumocystis carinii group I intron that does not require 2′ OH groups on its 5′ exon mimic for binding to the catalytic core
-
Testa, S. M., Haidaris, C. G., Gigliotti, F., and Turner, D. H. (1997) A Pneumocystis carinii group I intron that does not require 2′ OH groups on its 5′ exon mimic for binding to the catalytic core, Biochemistry 36, 15303-15314.
-
(1997)
Biochemistry
, vol.36
, pp. 15303-15314
-
-
Testa, S.M.1
Haidaris, C.G.2
Gigliotti, F.3
Turner, D.H.4
-
3
-
-
0024370698
-
Selection of the 3′-splice site in group I introns
-
Burke, J. M. (1989) Selection of the 3′-splice site in group I introns, FEBS Lett. 250, 129-133.
-
(1989)
FEBS Lett.
, vol.250
, pp. 129-133
-
-
Burke, J.M.1
-
4
-
-
0024427177
-
The guanosine binding site of the Tetrahymena ribozyme
-
Michel, F., Hanna, M., Green, R., Bartel, D., and Szostak, J. W. (1989) The guanosine binding site of the Tetrahymena ribozyme, Nature 342, 391-395.
-
(1989)
Nature
, vol.342
, pp. 391-395
-
-
Michel, F.1
Hanna, M.2
Green, R.3
Bartel, D.4
Szostak, J.W.5
-
5
-
-
0025128877
-
A 3′ splice site-binding sequence in the catalytic core of a group I intron
-
Burke, J. M., Esherick, J. S., Burfeind, W. R., and King, J. L. (1990) A 3′ splice site-binding sequence in the catalytic core of a group I intron, Nature 344, 80-82.
-
(1990)
Nature
, vol.344
, pp. 80-82
-
-
Burke, J.M.1
Esherick, J.S.2
Burfeind, W.R.3
King, J.L.4
-
6
-
-
0033035042
-
Specificity from steric restrictions in the guanosine binding pocket of a group I ribozyme
-
Russell, R., and Herschlag, D. (1999) Specificity from steric restrictions in the guanosine binding pocket of a group I ribozyme, RNA 5, 158-166.
-
(1999)
RNA
, vol.5
, pp. 158-166
-
-
Russell, R.1
Herschlag, D.2
-
7
-
-
0037125926
-
Probing the Tetrahymena Group I Ribozyme Reaction in Both Directions
-
Karbstein, K., Caroll, K. S., and Herschlag, D. (2002) Probing the Tetrahymena Group I Ribozyme Reaction in Both Directions, Biochemistry 41, 11171-11183.
-
(2002)
Biochemistry
, vol.41
, pp. 11171-11183
-
-
Karbstein, K.1
Caroll, K.S.2
Herschlag, D.3
-
8
-
-
0037418272
-
Extraordinarily slow binding of guanosine to the Tetrahymena group I intron ribozyme. Implications for RNA preorganization and function
-
Karbstein, K., and Herschlag, D. (2003) Extraordinarily slow binding of guanosine to the Tetrahymena group I intron ribozyme. Implications for RNA preorganization and function, Proc. Natl. Acad. Sci. U.S.A. 100, 2300-2305.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 2300-2305
-
-
Karbstein, K.1
Herschlag, D.2
-
9
-
-
0025155692
-
Direct measurement of oligonucleotide substrate binding to wild-type and mutant ribozymes from Tetrahymena
-
Pyle, A. M., McSwiggen, J. A., and Cech, T. R. (1990) Direct measurement of oligonucleotide substrate binding to wild-type and mutant ribozymes from Tetrahymena, Proc. Natl. Acad. Sci. U.S.A. 87, 8187-8191.
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 8187-8191
-
-
Pyle, A.M.1
McSwiggen, J.A.2
Cech, T.R.3
-
10
-
-
0037388052
-
Molecular recognition properties of IGS-mediated reactions catalyzed by a Pneumocystis carinii group I intron
-
Johnson, A. K., Baum, D. A., Bell, M. A., and Testa, S. M. (2003) Molecular recognition properties of IGS-mediated reactions catalyzed by a Pneumocystis carinii group I intron, Nucleic Acids Res. 31, 1921-1934.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1921-1934
-
-
Johnson, A.K.1
Baum, D.A.2
Bell, M.A.3
Testa, S.M.4
-
11
-
-
0026505591
-
On how hydrolysis at the 3′ end is prevented in the splicing of a sequentially folded group I intron
-
Fernandez, A. (1992) On how hydrolysis at the 3′ end is prevented in the splicing of a sequentially folded group I intron, FEBS Lett. 297, 201-204.
-
(1992)
FEBS Lett.
, vol.297
, pp. 201-204
-
-
Fernandez, A.1
-
12
-
-
0026505192
-
Mutational evidence for competition between the P1 and the P10 helices of a mitochondrial group I intron
-
Ritchings, B. W., and Lewin, A. S. (1992) Mutational evidence for competition between the P1 and the P10 helices of a mitochondrial group I intron, Nucleic Acids Res. 20, 2349-2353.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 2349-2353
-
-
Ritchings, B.W.1
Lewin, A.S.2
-
13
-
-
0029834485
-
The Cbp2 protein suppresses splice site mutations in a group I intron
-
Shaw, L. C., Thomas, J., and Lewin, A. S. (1996) The Cbp2 protein suppresses splice site mutations in a group I intron, Nucleic Acids Res. 24, 3415-3423.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 3415-3423
-
-
Shaw, L.C.1
Thomas, J.2
Lewin, A.S.3
-
14
-
-
0036252353
-
In vivo selection of better self-splicing introns in Escherichia coli: The role of the P1 extension helix of the Tetrahymena intron
-
Guo, F., and Cech, T. R. (2002) In vivo selection of better self-splicing introns in Escherichia coli: The role of the P1 extension helix of the Tetrahymena intron, RNA 8, 647-658.
-
(2002)
RNA
, vol.8
, pp. 647-658
-
-
Guo, F.1
Cech, T.R.2
-
15
-
-
0027281334
-
Binding of Guanosine and 3′ Splice Site Analogues to a Group I Ribozyme: Interactions with Functional Groups of Guanosine and with Additional Nucleotides
-
Moran, S., Kierzek, R., and Turner, D. H. (1993) Binding of Guanosine and 3′ Splice Site Analogues to a Group I Ribozyme: Interactions with Functional Groups of Guanosine and with Additional Nucleotides, Biochemistry 32, 5247-5256.
-
(1993)
Biochemistry
, vol.32
, pp. 5247-5256
-
-
Moran, S.1
Kierzek, R.2
Turner, D.H.3
-
16
-
-
0020469973
-
Making ends meet: A model for RNA splicing in fungal mitochondria
-
Davies, R. W., Waring, R. B., Ray, J. A., Brown, T. A., and Scazzocchio, C. (1982) Making ends meet: A model for RNA splicing in fungal mitochondria, Nature 300, 719-724.
-
(1982)
Nature
, vol.300
, pp. 719-724
-
-
Davies, R.W.1
Waring, R.B.2
Ray, J.A.3
Brown, T.A.4
Scazzocchio, C.5
-
17
-
-
0025054467
-
Splicing of COB intron 5 requires pairing between the internal guide sequence and both flanking exons
-
Partono, S., and Lewin, A. S. (1990) Splicing of COB intron 5 requires pairing between the internal guide sequence and both flanking exons, Proc. Natl. Acad. Sci. U.S.A. 87, 8192-8196.
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 8192-8196
-
-
Partono, S.1
Lewin, A.S.2
-
18
-
-
0032552882
-
Thermodynamic Parameters for an Expanded Nearest-Neighbor Model for Formation of RNA Duplexes with Watson-Crick Base Pairs
-
Xia, T., Santa Lucia, J., Burkard, M. E., Kierzek, R., Schroeder, S. J., Jiao, X., Cox, C., and Turner, D. H. (1998) Thermodynamic Parameters for an Expanded Nearest-Neighbor Model for Formation of RNA Duplexes with Watson-Crick Base Pairs, Biochemistry 37, 14719-14735.
-
(1998)
Biochemistry
, vol.37
, pp. 14719-14735
-
-
Xia, T.1
Santa Lucia, J.2
Burkard, M.E.3
Kierzek, R.4
Schroeder, S.J.5
Jiao, X.6
Cox, C.7
Turner, D.H.8
-
19
-
-
0022422372
-
Sites of circularization of the Tetrahymena rRNA IVS are determined by sequence and influenced by position and secondary structure
-
Been, M. D., and Cech, T. R. (1985) Sites of circularization of the Tetrahymena rRNA IVS are determined by sequence and influenced by position and secondary structure, Nucleic Acids Res. 13, 8389-8408.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 8389-8408
-
-
Been, M.D.1
Cech, T.R.2
-
20
-
-
0024120490
-
Determinants of the 3′ splice site for self-splicing of the Tetrahymena pre-rRNA
-
Price, J. V., and Cech, T. R. (1988) Determinants of the 3′ splice site for self-splicing of the Tetrahymena pre-rRNA, Genes Dev. 2, 1439-1447.
-
(1988)
Genes Dev.
, vol.2
, pp. 1439-1447
-
-
Price, J.V.1
Cech, T.R.2
-
21
-
-
0025367254
-
Self-splicing of group I introns
-
Cech, T. R. (1990) Self-splicing of group I introns, Annu. Rev. Biochem. 59, 543-568.
-
(1990)
Annu. Rev. Biochem.
, vol.59
, pp. 543-568
-
-
Cech, T.R.1
-
22
-
-
0023483462
-
Internal guide sequence and reaction specificity of group I self-splicing introns
-
Davies, R. W., Waring, R. B., and Towner, P. (1987) Internal guide sequence and reaction specificity of group I self-splicing introns, Cold Spring Harbor Symp. Quant. Biol. 52, 165-171.
-
(1987)
Cold Spring Harbor Symp. Quant. Biol.
, vol.52
, pp. 165-171
-
-
Davies, R.W.1
Waring, R.B.2
Towner, P.3
-
23
-
-
0025352703
-
Base Pairing between the 3′ Exon and an Internal Guide Sequence Increases 3′ Splice Site Specificity in the Tetrahymena Self-Splicing rRNA Intron
-
Suh, E. R., and Waring, R. B. (1990) Base Pairing between the 3′ Exon and an Internal Guide Sequence Increases 3′ Splice Site Specificity in the Tetrahymena Self-Splicing rRNA Intron, Mol. Cell. Biol. 10, 2960-2965.
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 2960-2965
-
-
Suh, E.R.1
Waring, R.B.2
-
24
-
-
0023657739
-
Guanosine binding required for cyclization of the self-splicing intervening sequence ribonucleic acid from Tetrahymena thermophila
-
Tanner, N. K., and Cech, T. R. (1987) Guanosine binding required for cyclization of the self-splicing intervening sequence ribonucleic acid from Tetrahymena thermophila, Biochemistry 26, 3330-3340.
-
(1987)
Biochemistry
, vol.26
, pp. 3330-3340
-
-
Tanner, N.K.1
Cech, T.R.2
-
25
-
-
0025312678
-
Mechanism of 3′ splice site selection by the catalytic core of the sunY intron of bacteriophage T4: The role of a novel base-pairing interaction in group I introns
-
Michel, F., Netter, P., Xu, M.-Q., and Shub, D. A. (1990) Mechanism of 3′ splice site selection by the catalytic core of the sunY intron of bacteriophage T4: the role of a novel base-pairing interaction in group I introns, Genes Dev. 4, 777-788.
-
(1990)
Genes Dev.
, vol.4
, pp. 777-788
-
-
Michel, F.1
Netter, P.2
Xu, M.-Q.3
Shub, D.A.4
-
26
-
-
0027819002
-
2′Hydroxyl Groups Important for Exon Polymerization and Reverse Exon Ligation Reactions Catalyzed by a Group I Ribozyme
-
Berzal-Herranz, A., Chowrira, B. M., Polsenberg, J. F., and Burke, J. M. (1993) 2′Hydroxyl Groups Important for Exon Polymerization and Reverse Exon Ligation Reactions Catalyzed by a Group I Ribozyme, Biochemistry 32, 8981-8986.
-
(1993)
Biochemistry
, vol.32
, pp. 8981-8986
-
-
Berzal-Herranz, A.1
Chowrira, B.M.2
Polsenberg, J.F.3
Burke, J.M.4
-
27
-
-
0030065737
-
A Mechanistic Framework for the Second Step of Splicing Catalyzed by the Tetrahymena Ribozyme
-
Bevilacqua, P. C., Sugimoto, N., and Turner, D. H. (1996) A Mechanistic Framework for the Second Step of Splicing Catalyzed by the Tetrahymena Ribozyme, Biochemistry 35, 648-658.
-
(1996)
Biochemistry
, vol.35
, pp. 648-658
-
-
Bevilacqua, P.C.1
Sugimoto, N.2
Turner, D.H.3
-
28
-
-
0142102891
-
Trans-splicing Ribozymes for Targeted Gene Delivery
-
Kohler, U., Ayre, B. G., Goodman, H. W., and Haseloff, J. (1999) Trans-splicing Ribozymes for Targeted Gene Delivery, J. Mol. Biol. 285, 1935-1950.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1935-1950
-
-
Kohler, U.1
Ayre, B.G.2
Goodman, H.W.3
Haseloff, J.4
-
29
-
-
0033616692
-
Design of highly specific cytotoxins by using trans-splicing ribozymes
-
Ayre, B. G., Kohler, U., Goodman, H. M., and Haseloff, J. (1999) Design of highly specific cytotoxins by using trans-splicing ribozymes, Proc. Natl. Acad. Sci. U.S.A. 96, 3507-3512.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 3507-3512
-
-
Ayre, B.G.1
Kohler, U.2
Goodman, H.M.3
Haseloff, J.4
-
30
-
-
0025850802
-
Implications of ribozyme kinetics for targeting the cleavage of specific RNA molecules in vivo: More isn't always better
-
Herschlag, D. (1991) Implications of ribozyme kinetics for targeting the cleavage of specific RNA molecules in vivo: more isn't always better, Proc. Natl. Acad. Sci. U.S.A. 88, 6921-6925.
-
(1991)
Proc. Natl. Acad. Sci. U.S.A.
, vol.88
, pp. 6921-6925
-
-
Herschlag, D.1
-
31
-
-
0033574153
-
Optimizing the Substrate Specificity of a Group I Intron Ribozyme
-
Zarrinkar, P. P., and Sullenger, B. A. (1999) Optimizing the Substrate Specificity of a Group I Intron Ribozyme, Biochemistry 38, 3426-3432.
-
(1999)
Biochemistry
, vol.38
, pp. 3426-3432
-
-
Zarrinkar, P.P.1
Sullenger, B.A.2
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