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Volumn 43, Issue 14, 2004, Pages 4323-4331

Enhancing the Second Step of the Trans Excision-Splicing Reaction of a Group I Ribozyme by Exploiting P9.0 and P10 for Intermolecular Recognition

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; ENZYMES; RNA;

EID: 1842479239     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi035874n     Document Type: Article
Times cited : (17)

References (31)
  • 1
    • 0037168445 scopus 로고    scopus 로고
    • Ribozyme-Catalyzed Excision of Targeted Sequences from within RNAs
    • Bell, M. A., Johnson, A. K., and Testa, S. M. (2002) Ribozyme-Catalyzed Excision of Targeted Sequences from within RNAs, Biochemistry 41, 15327-15333.
    • (2002) Biochemistry , vol.41 , pp. 15327-15333
    • Bell, M.A.1    Johnson, A.K.2    Testa, S.M.3
  • 2
    • 0030720935 scopus 로고    scopus 로고
    • A Pneumocystis carinii group I intron that does not require 2′ OH groups on its 5′ exon mimic for binding to the catalytic core
    • Testa, S. M., Haidaris, C. G., Gigliotti, F., and Turner, D. H. (1997) A Pneumocystis carinii group I intron that does not require 2′ OH groups on its 5′ exon mimic for binding to the catalytic core, Biochemistry 36, 15303-15314.
    • (1997) Biochemistry , vol.36 , pp. 15303-15314
    • Testa, S.M.1    Haidaris, C.G.2    Gigliotti, F.3    Turner, D.H.4
  • 3
    • 0024370698 scopus 로고
    • Selection of the 3′-splice site in group I introns
    • Burke, J. M. (1989) Selection of the 3′-splice site in group I introns, FEBS Lett. 250, 129-133.
    • (1989) FEBS Lett. , vol.250 , pp. 129-133
    • Burke, J.M.1
  • 4
    • 0024427177 scopus 로고
    • The guanosine binding site of the Tetrahymena ribozyme
    • Michel, F., Hanna, M., Green, R., Bartel, D., and Szostak, J. W. (1989) The guanosine binding site of the Tetrahymena ribozyme, Nature 342, 391-395.
    • (1989) Nature , vol.342 , pp. 391-395
    • Michel, F.1    Hanna, M.2    Green, R.3    Bartel, D.4    Szostak, J.W.5
  • 5
    • 0025128877 scopus 로고
    • A 3′ splice site-binding sequence in the catalytic core of a group I intron
    • Burke, J. M., Esherick, J. S., Burfeind, W. R., and King, J. L. (1990) A 3′ splice site-binding sequence in the catalytic core of a group I intron, Nature 344, 80-82.
    • (1990) Nature , vol.344 , pp. 80-82
    • Burke, J.M.1    Esherick, J.S.2    Burfeind, W.R.3    King, J.L.4
  • 6
    • 0033035042 scopus 로고    scopus 로고
    • Specificity from steric restrictions in the guanosine binding pocket of a group I ribozyme
    • Russell, R., and Herschlag, D. (1999) Specificity from steric restrictions in the guanosine binding pocket of a group I ribozyme, RNA 5, 158-166.
    • (1999) RNA , vol.5 , pp. 158-166
    • Russell, R.1    Herschlag, D.2
  • 7
    • 0037125926 scopus 로고    scopus 로고
    • Probing the Tetrahymena Group I Ribozyme Reaction in Both Directions
    • Karbstein, K., Caroll, K. S., and Herschlag, D. (2002) Probing the Tetrahymena Group I Ribozyme Reaction in Both Directions, Biochemistry 41, 11171-11183.
    • (2002) Biochemistry , vol.41 , pp. 11171-11183
    • Karbstein, K.1    Caroll, K.S.2    Herschlag, D.3
  • 8
    • 0037418272 scopus 로고    scopus 로고
    • Extraordinarily slow binding of guanosine to the Tetrahymena group I intron ribozyme. Implications for RNA preorganization and function
    • Karbstein, K., and Herschlag, D. (2003) Extraordinarily slow binding of guanosine to the Tetrahymena group I intron ribozyme. Implications for RNA preorganization and function, Proc. Natl. Acad. Sci. U.S.A. 100, 2300-2305.
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 2300-2305
    • Karbstein, K.1    Herschlag, D.2
  • 9
    • 0025155692 scopus 로고
    • Direct measurement of oligonucleotide substrate binding to wild-type and mutant ribozymes from Tetrahymena
    • Pyle, A. M., McSwiggen, J. A., and Cech, T. R. (1990) Direct measurement of oligonucleotide substrate binding to wild-type and mutant ribozymes from Tetrahymena, Proc. Natl. Acad. Sci. U.S.A. 87, 8187-8191.
    • (1990) Proc. Natl. Acad. Sci. U.S.A. , vol.87 , pp. 8187-8191
    • Pyle, A.M.1    McSwiggen, J.A.2    Cech, T.R.3
  • 10
    • 0037388052 scopus 로고    scopus 로고
    • Molecular recognition properties of IGS-mediated reactions catalyzed by a Pneumocystis carinii group I intron
    • Johnson, A. K., Baum, D. A., Bell, M. A., and Testa, S. M. (2003) Molecular recognition properties of IGS-mediated reactions catalyzed by a Pneumocystis carinii group I intron, Nucleic Acids Res. 31, 1921-1934.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 1921-1934
    • Johnson, A.K.1    Baum, D.A.2    Bell, M.A.3    Testa, S.M.4
  • 11
    • 0026505591 scopus 로고
    • On how hydrolysis at the 3′ end is prevented in the splicing of a sequentially folded group I intron
    • Fernandez, A. (1992) On how hydrolysis at the 3′ end is prevented in the splicing of a sequentially folded group I intron, FEBS Lett. 297, 201-204.
    • (1992) FEBS Lett. , vol.297 , pp. 201-204
    • Fernandez, A.1
  • 12
    • 0026505192 scopus 로고
    • Mutational evidence for competition between the P1 and the P10 helices of a mitochondrial group I intron
    • Ritchings, B. W., and Lewin, A. S. (1992) Mutational evidence for competition between the P1 and the P10 helices of a mitochondrial group I intron, Nucleic Acids Res. 20, 2349-2353.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 2349-2353
    • Ritchings, B.W.1    Lewin, A.S.2
  • 13
    • 0029834485 scopus 로고    scopus 로고
    • The Cbp2 protein suppresses splice site mutations in a group I intron
    • Shaw, L. C., Thomas, J., and Lewin, A. S. (1996) The Cbp2 protein suppresses splice site mutations in a group I intron, Nucleic Acids Res. 24, 3415-3423.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 3415-3423
    • Shaw, L.C.1    Thomas, J.2    Lewin, A.S.3
  • 14
    • 0036252353 scopus 로고    scopus 로고
    • In vivo selection of better self-splicing introns in Escherichia coli: The role of the P1 extension helix of the Tetrahymena intron
    • Guo, F., and Cech, T. R. (2002) In vivo selection of better self-splicing introns in Escherichia coli: The role of the P1 extension helix of the Tetrahymena intron, RNA 8, 647-658.
    • (2002) RNA , vol.8 , pp. 647-658
    • Guo, F.1    Cech, T.R.2
  • 15
    • 0027281334 scopus 로고
    • Binding of Guanosine and 3′ Splice Site Analogues to a Group I Ribozyme: Interactions with Functional Groups of Guanosine and with Additional Nucleotides
    • Moran, S., Kierzek, R., and Turner, D. H. (1993) Binding of Guanosine and 3′ Splice Site Analogues to a Group I Ribozyme: Interactions with Functional Groups of Guanosine and with Additional Nucleotides, Biochemistry 32, 5247-5256.
    • (1993) Biochemistry , vol.32 , pp. 5247-5256
    • Moran, S.1    Kierzek, R.2    Turner, D.H.3
  • 16
    • 0020469973 scopus 로고
    • Making ends meet: A model for RNA splicing in fungal mitochondria
    • Davies, R. W., Waring, R. B., Ray, J. A., Brown, T. A., and Scazzocchio, C. (1982) Making ends meet: A model for RNA splicing in fungal mitochondria, Nature 300, 719-724.
    • (1982) Nature , vol.300 , pp. 719-724
    • Davies, R.W.1    Waring, R.B.2    Ray, J.A.3    Brown, T.A.4    Scazzocchio, C.5
  • 17
    • 0025054467 scopus 로고
    • Splicing of COB intron 5 requires pairing between the internal guide sequence and both flanking exons
    • Partono, S., and Lewin, A. S. (1990) Splicing of COB intron 5 requires pairing between the internal guide sequence and both flanking exons, Proc. Natl. Acad. Sci. U.S.A. 87, 8192-8196.
    • (1990) Proc. Natl. Acad. Sci. U.S.A. , vol.87 , pp. 8192-8196
    • Partono, S.1    Lewin, A.S.2
  • 18
    • 0032552882 scopus 로고    scopus 로고
    • Thermodynamic Parameters for an Expanded Nearest-Neighbor Model for Formation of RNA Duplexes with Watson-Crick Base Pairs
    • Xia, T., Santa Lucia, J., Burkard, M. E., Kierzek, R., Schroeder, S. J., Jiao, X., Cox, C., and Turner, D. H. (1998) Thermodynamic Parameters for an Expanded Nearest-Neighbor Model for Formation of RNA Duplexes with Watson-Crick Base Pairs, Biochemistry 37, 14719-14735.
    • (1998) Biochemistry , vol.37 , pp. 14719-14735
    • Xia, T.1    Santa Lucia, J.2    Burkard, M.E.3    Kierzek, R.4    Schroeder, S.J.5    Jiao, X.6    Cox, C.7    Turner, D.H.8
  • 19
    • 0022422372 scopus 로고
    • Sites of circularization of the Tetrahymena rRNA IVS are determined by sequence and influenced by position and secondary structure
    • Been, M. D., and Cech, T. R. (1985) Sites of circularization of the Tetrahymena rRNA IVS are determined by sequence and influenced by position and secondary structure, Nucleic Acids Res. 13, 8389-8408.
    • (1985) Nucleic Acids Res. , vol.13 , pp. 8389-8408
    • Been, M.D.1    Cech, T.R.2
  • 20
    • 0024120490 scopus 로고
    • Determinants of the 3′ splice site for self-splicing of the Tetrahymena pre-rRNA
    • Price, J. V., and Cech, T. R. (1988) Determinants of the 3′ splice site for self-splicing of the Tetrahymena pre-rRNA, Genes Dev. 2, 1439-1447.
    • (1988) Genes Dev. , vol.2 , pp. 1439-1447
    • Price, J.V.1    Cech, T.R.2
  • 21
    • 0025367254 scopus 로고
    • Self-splicing of group I introns
    • Cech, T. R. (1990) Self-splicing of group I introns, Annu. Rev. Biochem. 59, 543-568.
    • (1990) Annu. Rev. Biochem. , vol.59 , pp. 543-568
    • Cech, T.R.1
  • 22
    • 0023483462 scopus 로고
    • Internal guide sequence and reaction specificity of group I self-splicing introns
    • Davies, R. W., Waring, R. B., and Towner, P. (1987) Internal guide sequence and reaction specificity of group I self-splicing introns, Cold Spring Harbor Symp. Quant. Biol. 52, 165-171.
    • (1987) Cold Spring Harbor Symp. Quant. Biol. , vol.52 , pp. 165-171
    • Davies, R.W.1    Waring, R.B.2    Towner, P.3
  • 23
    • 0025352703 scopus 로고
    • Base Pairing between the 3′ Exon and an Internal Guide Sequence Increases 3′ Splice Site Specificity in the Tetrahymena Self-Splicing rRNA Intron
    • Suh, E. R., and Waring, R. B. (1990) Base Pairing between the 3′ Exon and an Internal Guide Sequence Increases 3′ Splice Site Specificity in the Tetrahymena Self-Splicing rRNA Intron, Mol. Cell. Biol. 10, 2960-2965.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 2960-2965
    • Suh, E.R.1    Waring, R.B.2
  • 24
    • 0023657739 scopus 로고
    • Guanosine binding required for cyclization of the self-splicing intervening sequence ribonucleic acid from Tetrahymena thermophila
    • Tanner, N. K., and Cech, T. R. (1987) Guanosine binding required for cyclization of the self-splicing intervening sequence ribonucleic acid from Tetrahymena thermophila, Biochemistry 26, 3330-3340.
    • (1987) Biochemistry , vol.26 , pp. 3330-3340
    • Tanner, N.K.1    Cech, T.R.2
  • 25
    • 0025312678 scopus 로고
    • Mechanism of 3′ splice site selection by the catalytic core of the sunY intron of bacteriophage T4: The role of a novel base-pairing interaction in group I introns
    • Michel, F., Netter, P., Xu, M.-Q., and Shub, D. A. (1990) Mechanism of 3′ splice site selection by the catalytic core of the sunY intron of bacteriophage T4: the role of a novel base-pairing interaction in group I introns, Genes Dev. 4, 777-788.
    • (1990) Genes Dev. , vol.4 , pp. 777-788
    • Michel, F.1    Netter, P.2    Xu, M.-Q.3    Shub, D.A.4
  • 26
    • 0027819002 scopus 로고
    • 2′Hydroxyl Groups Important for Exon Polymerization and Reverse Exon Ligation Reactions Catalyzed by a Group I Ribozyme
    • Berzal-Herranz, A., Chowrira, B. M., Polsenberg, J. F., and Burke, J. M. (1993) 2′Hydroxyl Groups Important for Exon Polymerization and Reverse Exon Ligation Reactions Catalyzed by a Group I Ribozyme, Biochemistry 32, 8981-8986.
    • (1993) Biochemistry , vol.32 , pp. 8981-8986
    • Berzal-Herranz, A.1    Chowrira, B.M.2    Polsenberg, J.F.3    Burke, J.M.4
  • 27
    • 0030065737 scopus 로고    scopus 로고
    • A Mechanistic Framework for the Second Step of Splicing Catalyzed by the Tetrahymena Ribozyme
    • Bevilacqua, P. C., Sugimoto, N., and Turner, D. H. (1996) A Mechanistic Framework for the Second Step of Splicing Catalyzed by the Tetrahymena Ribozyme, Biochemistry 35, 648-658.
    • (1996) Biochemistry , vol.35 , pp. 648-658
    • Bevilacqua, P.C.1    Sugimoto, N.2    Turner, D.H.3
  • 28
    • 0142102891 scopus 로고    scopus 로고
    • Trans-splicing Ribozymes for Targeted Gene Delivery
    • Kohler, U., Ayre, B. G., Goodman, H. W., and Haseloff, J. (1999) Trans-splicing Ribozymes for Targeted Gene Delivery, J. Mol. Biol. 285, 1935-1950.
    • (1999) J. Mol. Biol. , vol.285 , pp. 1935-1950
    • Kohler, U.1    Ayre, B.G.2    Goodman, H.W.3    Haseloff, J.4
  • 29
    • 0033616692 scopus 로고    scopus 로고
    • Design of highly specific cytotoxins by using trans-splicing ribozymes
    • Ayre, B. G., Kohler, U., Goodman, H. M., and Haseloff, J. (1999) Design of highly specific cytotoxins by using trans-splicing ribozymes, Proc. Natl. Acad. Sci. U.S.A. 96, 3507-3512.
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 3507-3512
    • Ayre, B.G.1    Kohler, U.2    Goodman, H.M.3    Haseloff, J.4
  • 30
    • 0025850802 scopus 로고
    • Implications of ribozyme kinetics for targeting the cleavage of specific RNA molecules in vivo: More isn't always better
    • Herschlag, D. (1991) Implications of ribozyme kinetics for targeting the cleavage of specific RNA molecules in vivo: more isn't always better, Proc. Natl. Acad. Sci. U.S.A. 88, 6921-6925.
    • (1991) Proc. Natl. Acad. Sci. U.S.A. , vol.88 , pp. 6921-6925
    • Herschlag, D.1
  • 31
    • 0033574153 scopus 로고    scopus 로고
    • Optimizing the Substrate Specificity of a Group I Intron Ribozyme
    • Zarrinkar, P. P., and Sullenger, B. A. (1999) Optimizing the Substrate Specificity of a Group I Intron Ribozyme, Biochemistry 38, 3426-3432.
    • (1999) Biochemistry , vol.38 , pp. 3426-3432
    • Zarrinkar, P.P.1    Sullenger, B.A.2


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