ReDiT: Repeat Discrepancy Tagger - A shotgun assembly finishing aid

Bioinformatics

Volumn 20, Issue 5, 2004, Pages 803-804

  Tammi, Martti T ^a   Arner, Erik ^a   Kindlund, Ellen ^a   Anderson, Björn ^a  

^a KAROLINSKA INSTITUTE   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTICAL ERROR; ARTICLE; BIOINFORMATICS; COMPUTER PROGRAM; CONSENSUS SEQUENCE; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC DATABASE; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE TAGGED SITE; SIMPLE SEQUENCE REPEAT;

EID: 1842455188     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth004     Document Type: Article

References (5)

1. Ewing,B. and Green,P. (1998) Base-calling of automated sequencer traces using phred II. Error probabilities. Genome Res., 8, 186-194.
2. Gordon,D., Abajian,C. and Green,P. (1998) Consed: A graphical tool for sequence finishing. Genome Res., 8, 195-202.
3. Myers,E., Sutton,G., Delcher,A., Dew,I., Fasulo,D., Flanigan,M., Kravitz,S., Mobarry,C., Reinert,K., Remington,K. et al. (2000) A whole-genome assembly of Drosophila. Science, 287, 2196-2204.
4. Tammi,M.T., Arner,E., Britton,T. and Andersson,B. (2002) Separation of nearly identical repeats in shot-gun assemblies using defined nucleotide positions, DNPs. Bioinformatics, 18, 379-378.
5. Tammi,M.T., Arner,E., Kindlund,E. and Andersson,B. (2003) Correcting errors in shotgun sequences. Nucleic Acids Res., 31, 4663-4672.