Using real-valued multi-objective genetic algorithms to model molecular absorption spectra and Raman excitation profiles in solution

Physical Chemistry Chemical Physics

Volumn , Issue , 2004, Pages 1085-1095

  Hennessy, Margaret H ^a   Kelley, Anne Myers ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ABSORPTION SPECTROSCOPY; ALGORITHM; ARTICLE; BASE PAIRING; CHROMOSOME; CROSSING OVER; ENERGY; GENE MUTATION; GENETIC ALGORITHM; GENETIC RECOMBINATION; MODEL; PHENOTYPE; POPULATION GENETICS; RAMAN SPECTROMETRY; SPECTROSCOPY; VIBRATION;

EID: 1842454837     PISSN: 14639076     EISSN: None     Source Type: Journal    
DOI: 10.1039/b315893d     Document Type: Article

References (59)

1. A. B. Myers Acc. Chem. Res., 1997, 30, 519.
2. A. M. Kelley J. Phys. Chem. A, 1999, 103, 6891.
3. A. B. Myers, in Laser Techniques in Chemistry, ed. A. B. Myers and T. R. Rizzo, John Wiley & Sons, Ltd, New York, 1995, p. 325
4. M. H. Hennessy, Z. G. Soos, D. F. Watson, A. B. Bocarsly J. Phys. Chem. B., 2000, 104, 10 909.
5. J. T. Hupp, R. D. Williams Acc. Chem. Res., 2001, 34, 808.
6. P. J. Reid Acc. Chem. Res., 2001, 34, 691.
7. M. K. Lawless, S. D. Wickham, R. A. Mathies Acc. Chem. Res., 1995, 28, 493.
8. A. M. Brouwer, C. Svendsen, O. S. Mortensen, R. Wilbrandt J. Raman Spectrosc., 1998, 29, 439.
9. D. S. Egolf, M. R. Waterland, A. M. Kelley J. Phys. Chem. B., 2000, 104, 10 727.
10. M. R. Waterland, A. M. Kelley J. Phys. Chem. A, 2001, 105, 8385.
11. A. M. Moran, D. S. Egolf, M. Blanchard-Desce, A. M. Kelley J. Chem. Phys., 2002, 116, 2542.
12. W. Leng, A. M. Kelley Langmuir, 2003, 19, 7049.
13. A. P. Esposito, T. Stedl, H. Jónsson, P. J. Reid, K. A. Peterson J. Phys. Chem. A, 1999, 103, 1748.
14. G. M. Sando, A. Ray, L. O. Spreer, K. G. Spears, J. T. Hupp Inorg. Chem., 2000, 39, 3911.
15. D. S. Talaga, J. I. Zink J. Phys. Chem. A, 2001, 105, 10 511.
16. R. Schweitzer-Stenner, A. Cupane, M. Leone, C. Lemke, J. Schott, W. Dreybrodt J. Phys. Chem. B, 2000, 104, 4754.
17. M. A. Webb, C. N. Kiser, J. H. Richards, A. J. De Billo, H. B. Gray, J. R. Winkler, G. R. Loppnow J. Phys. Chem. B, 2000, 104, 10 915.
18. K. H. Leung, D. L. Phillips, Z. Mao, C.-M. Che, V. M. Miskowski, C.-K. Chan Inorg. Chem., 2002, 41, 2054.
19. J. McHale Acc. Chem. Res., 2001, 34, 265.
20. M. Tsuchiya, J. Ross J. Phys. Chem. A, 2001, 105, 4052.
21. L. Li, T. A. Darden, S. J. Freedman, B. C. Furie, B. Furie, J. D. Baleja, H. Smith, R. G. Hiskey, L. G. Pedersen Biochem., 1997, 36, 2132.
22. J. Meiler, M. Will J. Am. Chem. Soc., 2002, 124, 1868.
23. D. M. Deaven, K. M. Ho Phys. Rev. Lett., 1995, 75, 288-291
24. R. P. White, J. A. Niesse, H. R. Mayne J. Chem. Phys., 1998, 108, 2208.
25. M. Iwamatsu J. Chem. Phys., 2000, 112, 10 976.
26. H. Kabrede, R. Hentschke J. Phys. Chem. B, 2002, 106, 10 089.
27. M. C. Hutter, J. R. Reimers, N. S. Hush J. Phys. Chem. B, 1998, 102, 8080.
28. H. Nakanishi, M. Sugawara Chem. Phys. Lett., 2000, 327, 429.
29. J. Hunger, G. Huttner J. Comput. Chem., 1999, 20, 455.
30. J. Dods, D. Gruner, P. Brumer Chem. Phys. Lett., 1996, 261, 612.
31. M. Lilichenko, A. M. Kelley J. Chem. Phys., 2001, 114, 7094.
32. J. A. Hageman, R. Wehrens, R. de Gelder, W. L. Meerts, L. M. C. Buydens J. Chem. Phys., 2000, 113, 7955.
33. S.-Y. Lee, E. J. Heller J. Chem. Phys., 1979, 71, 4777.
34. S. Mukamel, Principles of Nonlinear Optical Spectroscopy, Oxford University Press, New York, 1995
35. B. Li, A. E. Johnson, S. Mukamel, A. B. Myers J. Am. Chem. Soc., 1994, 116, 11 039.
36. A. B. Myers, and R. A. Mathies, in Biological Applications of Raman Spectroscopy, ed. T. G. Spiro, John Wiley & Sons, Ltd, New York, 1987, vol. 2, p. 1
37. Y. J. Yan, S. Mukamel J. Chem. Phys., 1986, 85, 5908.
38. D. J. Tannor, E. J. Heller J. Chem. Phys., 1982, 77, 202.
39. A. B. Myers, R. A. Mathies, D. J. Tannor, E. J. Heller J. Chem. Phys., 1982, 77, 3857.
40. J. H. Holland, Adaptation in Natural and Artificial Systems, 2nd Ed., Bradford Books (MIT Press), Cambridge, MA, 1992
41. D. E. Goldberg, Genetic Algorithms in Search, Optimization, and Machine Learning, Addison-Wesley Publishing Company Inc., Reading, MA, 1989
42. Z. Michalewicz, Genetic Algorithms + Data Structures = Evolution Programs, Springer-Verlag, Berlin, 1994
43. M. Mitchell, An Introduction to Genetic Algorithms, MIT Press, Cambridge, MA, 1996
44. A. H. Wright, in Foundations of Genetic Algorithms, ed. G. J. Rawlins, Morgan Kaufmann Publishers Inc., San Mateo, CA, 1991, p. 205
45. C. Z. Janikow, and Z. Michalewicz, in Proceedings of the Fourth International Conference on Genetric Algorithms, ed. R. K. Belew and L. B. Booker, Morgan Kaufmann Publishers Inc., San Mateo, CA, 1991, p. 31
46. L. Davis, in Proceedings of the Third International Conference on Genetic Algorithms, ed. J. D. Shaffer, Morgan Kaufmann Publishers Inc., San Mateo, CA, 1989, p. 61
47. L. J. Eshelman, and J. D. Schaffer, in Foundations of Genetic Algorithms, 2, ed. L. D. Whitley, Morgan Kaufmann Publishers Inc., San Mateo, CA, 1993, p. 187
48. R. Salomon BioSystems, 1996, 39, 263.
49. K. A. De Jong, Analysis of the Behavior of a Class of Genetic Adaptive Systems, University of Michigan, 1975
50. T. Bäck, H.-P. Schwefel Evol. Comput., 1993, 1, 1-23
51. N. Srinivas, K. Deb Evol. Comput., 1994, 2, 3, 221.
52. J. Horn, N. Nafpliotis, and D. E. Goldberg, in Proceedings of the First IEEE Conference on Evolutionary Computation, IEEE World Congress on Computational Intelligence, IEEE Service Center, Piscataway, New Jersey, 1994, vol. 1, p. 82
53. E. Zitzler, and L. Thiele, An Evolutionary Algorithm for Multiobjective Optimization: The Strength Pareto Approach, ETH, Zurich, 1998
54. D. E. Goldberg, and J. Richardson, in Proceedings of the Second International Conference on Genetic Algorithms, ed. J. Grefenstette, Lawrence Erlbaum Associates, Hillsdale, NJ, 1987, p. 41
55. C. M. Fonseca, and P. J. Fleming, in Genetic Algorithms: Proceedings of the Fifth International Conference, Morgan Kaufmann Publishers Inc., San Mateo, CA, 1993, p. 416
56. C. A. Coello Coello Knowl. Inf. Syst., 1999, 1, 3, 129.
57. C. M. Fonseca, P. J. Fleming Evol. Comput., 1995, 3, 1, 1.
58. K. Deb, in Evolutionary Algorithms in Engineering and Computer Science, ed. K. Miettinen, M. M. Mäkelä, P. Neittaanmäki and J. Periaux, John Wiley & Sons, Ltd., Chichester, UK, 1999, p. 135
59. E. Zitzler, M. Laumanns, and L. Thiele, SPEA2: Improving the Strength Pareto Evolutionary Algorithm, ETH, Zurich, 2001