Functional analysis of in vivo and in organello footprinting of HeLa cell mitochondrial DNA in relationship to ATP and ethidium bromide effects on transcription

Journal of Biological Chemistry

Volumn 272, Issue 30, 1997, Pages 18896-18904

  Micol, Vicente ^a,b   Fernández Silva, Patricio ^a,c   Attardi, Giuseppe ^a  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^b UNIVERSITY OF MURCIA   (Spain)

^c BAMBINO GESÙ CHILDREN S HOSPITAL   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; ETHIDIUM BROMIDE; MITOCHONDRIAL DNA; RIBOSOME DNA;

ARTICLE; CELL ORGANELLE; CONTROLLED STUDY; DNA FOOTPRINTING; HELA CELL; HUMAN; HUMAN CELL; MESSENGER RNA SYNTHESIS; METHYLATION; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; TRANSCRIPTION INITIATION; TRANSCRIPTION TERMINATION;

ADENOSINE TRIPHOSPHATE; BASE SEQUENCE; BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTORS; DNA; DNA FOOTPRINTING; DNA METHYLATION; DNA, MITOCHONDRIAL; DNA, RIBOSOMAL; DOSE-RESPONSE RELATIONSHIP, DRUG; ETHIDIUM; HELA CELLS; HUMANS; INTERCALATING AGENTS; LEUCINE ZIPPERS; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS (GENETICS); RNA; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC; URIDINE TRIPHOSPHATE;

EID: 1842339276     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.272.30.18896     Document Type: Article

References (43)

1. Attardi, G., and Schatz, G. (1988) Annu. Rev. Cell Biol. 4, 289-333
2. Cantatore, P., and Attardi, G. (1980) Nucleic Acids Res 8, 2605-2624
3. Montoya, J., Christianson, T., Levens, D., Rabinowitz, M., and Attardi, G. (1982) Proc. Natl. Acad. Sci. U. S. A. 79, 7195-7199
4. Montoya, J., Gaines, G., and Attardi, G. (1983) Cell 34, 151-159
5. Yoza, B. K., and Bogenhagen, D. F. (1984) J. Biol. Chem. 259, 3909-3915
6. Gaines, G., and Attardi, G. (1984) J. Mol. Biol. 172, 451-466
7. Gaines, G., and Attardi, G. (1984) Mol. Cell. Biol. 4, 1605-1617
8. Gaines, G., Rossi, C., and Attardi, G. (1987) J. Biol. Chem. 262, 1907-1915
9. Chomyn, A., and Attardi, G. (1992) in Molecular Mechanisms in Bioenergetics (Ernster, L., ed) pp. 483-509, Elsevier Science Publishing Co., Inc., New York
10. Gelfand, R., and Attardi, G. (1981) Mol. Cell. Biol. 1, 497-511
11. Kruse, B., Narasimhan, N., and Attardi, G. (1989) Cell 58, 391-397
12. Daga, A., Micol, V., Hess, D., Aebersold, R., and Attardi, G. (1993) J. Biol. Chem. 268, 8123-8130
13. Micol, V., Fernández-Silva, P., and Attardi, G. (1996) Methods Enzymol. 264, 158-173
14. Christianson, T. W., and Clayton, D. A. (1988) Mol. Cell. Biol. 8, 4502-4509
15. Fisher, R. P., Topper, J. N., and Clayton, D. A. (1987) Cell 50, 247-258
16. Fisher, R. P., Parisi, M. A., and Clayton, D. A. (1989) Genes Dev. 3, 2202-2217
17. Ghivizzani, S. C., Madsen, C. S., and Hauswirth, W. W. (1993) J. Biol. Chem. 268, 8675-8682
18. Ghivizzani, S. C., Madsen, C. S., Nelen, M. R., Ammini, C. V., and Hauswirth, W. W. (1994) Mol. Cell. Biol. 14, 7717-7730
19. Madsen, C. S., Ghivizzani, S. C., and Hauswirth, W. W. (1993) Mol. Cell. Biol. 13, 2162-2171
20. Cantatore, P., Daddabbo, L., Fracasso, F., and Gadaleta, M. N. (1995) J. Biol. Chem. 270, 25020-25027
21. Micol, V., Fernández-Silva, P., and Attardi, G. (1996) Methods Enzymol. 264, 3-11
22. Ammini, C. V., Ghivizzani, S. C., Madsen, C. S., and Hauswirth, W. W. (1996) Methods Enzymol. 264, 23-36
23. Church, G. M., and Gilbert, W. (1984) Proc. Natl. Acad. Sci. U.S.A. 81, 1991-1995
24. Ephrussi, A., Church, G. M., Tonegawa, S., and Gilbert, W. (1985) Science 227, 134-137
25. King, M., and Attardi, G. (1989) Science 246, 500-503
26. Anderson, S., Bankier, A. T., Barrell, B. G., de Bruijin, M. H. L., Coulson, A. R., Drouin, J., Eperon, I. C., Nierlich, D. P., Roe, B. A., Sanger, F., Shreier, P. H., Smith, A. J. H., Staden, R., and Young, I. G. (1981) Nature 290, 457-465
27. Fernández-Silva, P., Micol, V., and Attardi, G. (1996) Methods Enzymol. 264, 129-139
28. Lawley, P. D. (1966) Prog. Nucleic Acid Res. Mol. Biol. 5, 89-131
29. Gilson, E., Roberge, M., Giraldo, R., Rhodes, D., and Gasser, S. M. (1993) J. Mol. Biol. 231, 293-310
30. Hsieh, D. J., Camiolo, S. M., and Yates, J. L. (1993) EMBO J. 12, 4933-4944
31. Faber, S., O'Brien, R. M., Imai, E., Granner, D. K., and Chalkey, R. (1993) J. Biol. Chem. 268, 24976-24985
32. Krumm, A., Meulia, T., Brunvand, M., and Groudine, M. (1992) Genes Dev. 6, 2201-2213
33. Giardina, C., Perez-Riba, M., and Lis, J. T. (1992) Genes Dev. 6, 2190-2200
34. Fernández-Silva, P., Martinez-Azorin, F., Micol, V., and Attardi, G. (1997) EMBO J. 16, 1066-1079
35. Chang, D. D., and Clayton, D. A. (1984) Cell 36, 635-643
36. Hixson, J. E., and Clayton, D. A. (1985) Proc. Natl. Acad. Sci. U. S. A. 82, 2660-2664
37. Bogenhagen, D. F., Applegate, E. F., and Yoza, B. K. (1984) Cell 36, 1105-1113
38. Bogenhagen, D. F., and Romanelli, M. F. (1988) Mol. Cell. Biol. 6, 2917-2924
39. Ogata, R. T., and Gilbert, W. (1979) J. Mol. Biol. 132, 709-728
40. Cantatore, P., Flagella, Z., Fracasse, F., Lezza, A. M. S., Gadaleta, M. N., and de Montalvo, A. (1987) FEBS Lett. 213, 144-148
41. Narasimhan, N., and Attardi, G. (1987) Proc. Natl. Acad. Sci. U. S. A. 84, 4078-4082
42. Enriquez, J. A., Fernández-Silva, P., Perez-Martos, A., López-Pérez, M. J., and Montoya, J. (1996) Eur. J. Biochem. 237, 601-610
43. Qjala, D., Merkel, C., Gelfand, R., and Attardi, G. (1980) Cell 22, 393-403