Isolation and characterization of micro satellites in Bambusa arundinacea and cross species amplification in other bamboos

African Journal of Biotechnology

Volumn 4, Issue 2, 2005, Pages 151-156

  Nayak, Sumitra ^a   Rout, Gyana Ranjan ^a  

^a Regional Plant Resource Centre   (India)

Author keywords

Bambusa arundinacea; Cross species amplification; Microsatellite marker; Population study; Species identification

Indexed keywords

MICROSATELLITE DNA;

ALLELE; ARTICLE; BAMBUSA; BAMBUSA ARUNDINACEA; BAMBUSA ARUNINACEA; CONTROLLED STUDY; GENE LOCUS; GENETIC POLYMORPHISM; GENETIC VARIABILITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENETICS; SEQUENCE ANALYSIS; SIMPLE SEQUENCE REPEAT; SPECIES;

BAMBUSA; BAMBUSA BAMBOS; POACEAE;

EID: 18244389693     PISSN: 16845315     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (40)

1. Anderson JA, Churchilll GA, Austrique JE, Tanskley SD, Sorells ME. (1992). Optimizing parental selection for genetic linkage map. Genome 36:181-186.
2. Brondani C, Brondani RP, Rangel PH, Ferreira ME (2001). Development and mapping of Oryza glumaepatula-derived microsatellite markers in the interspecific cross Oryza glumaepatula x O. sativa. Hereditas 134: 59-71.
3. Brondani RP, Brondani C, Grattapaglia D (2002). Towards a genuswide reference linkage map for Eucalyptus based exclusively on highly informative microsatellite markers. Mol. Genet. Genomics.267:338-347.
4. Cantini C, Lezzoni, AF, Boritzki M, Struss D (2001). DNA fingerprinting of tetraploid cherry germplasm using simple sequence repeats. J. Am. Soc. Hortic. Sci. 126:205-209.
5. Cordeiro GM, Casu, R, McIntyre CL, Manners JM, Henry, RJ (2001). Microsatellite markers from sugarcane (Saccharum spp) ESTs cross transferable to ailanthus and sorghum. Plant Sci.160:1115-1123.
6. Deutech C, Seiter J, Petronelli P, Joly HI, Jarne P (2002). Evidence of gene flow in a geotropically clustered tree species in two rainforest stands of French Guiana. Mol. Ecol. 11:725-738.
7. Doyle JJ, Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12:13-15.
8. Eustoup A, Taillieez C, Cornuet JM, Solignac M (1995). Size homoplasy and mutational processes of interrupted microsatellites in two bee species, Apies mellifera and Bombus terrestris (Apidae). Mol. Biol. Evol. 12:1074-1084.
9. Faria M, Magalhaes AR, Ferreira MA, Meredith CP, Monterio FF (2000). Vitis vinifera must must varietal authentication using microsatellite DNA analysis (SSR). J. Agric. Food Chem. 48:1096-1100.
10. Field D, Wills C (1996). Long polymorphic microsatellites in simple organisms. Proc. Roy. Soc. Lond. 263:209-215.
11. Glaubitz JC, Emebiri LC, Moran GF (2001) Dinucleotide microsatellites from Eucalyptus sieberi: inheritance, diversity, and improved scoring of single-base differences. Genome 44:1041-1045.
12. Goldstein DB., Clark AG. (1995) Microsatellite variation in North American population of Drosophila melanogastor. Nucleic Acid Res., 23:3882-3886.http://www.americanbamboo.org.- American Bamboo Soc. USA.
13. nd edition. Sinauer Associates., MA, USA.
14. Jakupiak JP, Wells RD (1999).Genetic instabilities in (CTG.CAG) repeats occur by recombination. J. Biol. Chem. 274: 23468-23479.
15. Kim NS, Armstrong KC, Fedak G, Ho K, Park NI. (2002) A microsatellite sequence from the rice blast fungus (Magnaporthe grisea) distinguishes between the centromeres of Hordeum vulgare and H. bulbosum in hybrid plants. Genome 4:165-174.
16. Kisuki S, Isagi, Y (2002). Microsatellite genetic variation in small and isolated populations of Magnolia sieboldii ssp.japonica. Heredity 88:313-321.
17. Kisuki S, Isagi, Y (2002). Microsatellite genetic variation in small and isolated populations of Magnolia sieboldii ssp.japonica. Heredity 88:313-321.
18. Li CD, Rossanagel BG, Seoles GJ. (2000). The development of oat microsatellite markers and their use in identifying relationships among Avena species and cultivars. Theory, Appl. Genet. 101:1259-1268.
19. Lefort F, Kyvelos CJ, Zervou M, Edwards KJ, Angelakis KA (2002) Characterization of new microsatelliteloci from Vitis vinefera and their conservation in some Vitis species and hybrids. Mol. Ecol. Notes 2:20-21.
20. Liu DC, Gao MQ, Guan RX, Li RZ, Cao SH, Guo XL, Zhang AM (2002) Mapping quantitative trait loci for plant height in wheat (Triticum aestivum L.) using a F2:3 population.Yi Chuan Xue Bao, 29: 706-711.
21. Marinoni D, Akkak A, Bouhous G, Edwards KJ, Botta R (2003). Development and characterization of microsatellite markers in Castanea sativa (Mill.). Mol. Breed. 11:127-136.
22. McCouch SR, Chen X, Panaund O, Temnykh S, Xu Y, Cho, YG, Hunang N, Ishii T, Blair M (1997). Microsatellite marker development, mapping and application in rice genetics and breeding Plant Mol. Biol. 35:89-99.
23. Mariette S, Le Corre V, Austerlitz F, Kremer A. (2002). Sampling within the genome for measuring within-population diversity: trade-offs between markers. Mol. Ecol. 11:1145-1156.
24. Morgante M, Hanafey M, Powell W (2002) Microsatellites are preferentially associated with non-repetative DNA in plant genomes. Nature Genetics 30:194 -200.
25. Nei M (1987). Molecular Evolutionary Genetics Columbia University press, New York.
26. Paniego N, Echaide M, Munoz M, Fernandez L, Torales S, Faccio P, Fuxan I, Carrera M, Zandomeni R, Suarez EY, Hopp HE. (2002) Microsatellite isolation and characterization in sunflower (Helianthus annuus L.). Genome 45:34-43.
27. Ramsay L, Macaulay M, Cardle L, Degli Ivanissevich S, Maestri E, Powell W Waugh R (1999) Intimate association of microsatellite repeats with retotransposons and other dispersed repetitive elements in barley. Plant Jour. 17:415-425.
28. Ramsay L, Macauley M, Ivanissevich SD, Maclean K, Cardle L, Fuller J, Edwards S, Tuvesson S, Morgante M, Massari A, Maestri E, Marmiroli N, Sjakste T, Gana IM, Powell W, Waugh R (2000). A simple sequence repeat-based linkage map of barley. Genetics 156:1997-2005.
29. Richards RI, Sutherland GR (1994). Simple repeat DNA is not replicated simply. Nature Genetics 6:114-116.
30. Riesner DG, Steger RZ, Owens RA, Wagenhofer M, Hillen W, Vollbach S, Henko K (1989). Temperature-gradient gel electrophoresis of nucleic acids: analysis of conformational transition, sequence variations and protein nucleic acid interactions. Electrophoresis,10:377-389.
31. nd Edition. Cold Spring Harbor Laboratory Press, New York.
32. Schlötterer C, Tautz D (1992). Slippage synthesis of simple sequence repeats. Nucl. Acid Res. 20:211-216.
33. Schug MD, Mackay TFC, Aquadro CF (1997) Low mutation rates of microsatellite loci in Drosophilla melanogaster. Nature Genet. 15:99-102.
34. Sharopova N, McMullen MD, Schultz L, Schroeder S, Sanchez-Villeda H, Gardiner J, Bergstorm D, Houchins K, Melia Hancock S, Musket T, Duru N, Polacco M, Edwards K, Ruff T, Register JC, Brouwer C, Thompson R, Velasco R, Chin E, Lee M, Woodman-Clikeman W, Long MJ, Liscum E, Cone K, Davis G, Coe EH Jr (2002). Development and mapping of SSR markers for maize. Plant Mol. Biol. 48:463-81.
35. Tautz D, Schlötterer C (1994). Simple sequences. Curr. Opinion Genetics and Development 4:832-837.
36. Wright S. (1978) Variability within and among natural populations. Vol 4. The University of Chicago Press, Chicago.
37. Xie CJ, Ni ZF, Sun QX, Yang ZM, Liu BS, Wei YL (2001). Molecular tagging of a major powdery mildew resistance gene MIG in wheat derived from wild Emmer by using microsatellite markers. Yi Chuan Xue Bao, 28:1034-1039.
38. Xin X, Mei UP, Zhian F, Xiping XU (2002).The direction of microsatellite mutation is dependent upon repeat length. Nature Genetics 24:396-399.
39. Zane L, Bargelloni L, Patarnello T (2002) Strategies for microsatellite isolation- a review. Mol. Ecol.11:1-16.
40. Zhu Y, Queller DC, Strassman JE (2000) A phylogenetic perspective on sequence evolution in microsatellite loci. J. Mol. Evol. 50:324-338.