Cloning and characterization of ZNF189, a novel human Kruppel-like zinc finger gene localized to chromosome 9q22-q31

Genomics

Volumn 50, Issue 2, 1998, Pages 213-221

  Odeberg, Jacob ^a   Røsok, Øystein ^b   Gudmundsson, Gudmundur H ^c   Ahmadian, Afshin ^a   Roshani, Leyla ^d   Williams, Cecilia ^a   Larsson, Catharina ^d   Pontén, Fredrik ^e   Uhlén, Mathias ^a   Åsheim, Hans Christian ^b   Lundeberg, Joakim ^a  

^a ROYAL INSTITUTE OF TECHNOLOGY   (Sweden)

^b OSLO UNIVERSITY HOSPITAL   (Norway)

^c KAROLINSKA INSTITUTE   (Sweden)

^d KAROLINSKA UNIVERSITY HOSPITAL   (Sweden)

^e UPPSALA UNIVERSITY HOSPITAL   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ZINC FINGER PROTEIN;

ARTICLE; BASAL CELL CARCINOMA; CANCER CELL CULTURE; CARBOXY TERMINAL SEQUENCE; CHROMOSOME 9Q; GENE LOCATION; GENE SEQUENCE; HUMAN; MOLECULAR CLONING; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DETERMINATION; REPRESSOR GENE; SEQUENCE ANALYSIS; SQUAMOUS CELL CARCINOMA;

MAMMALIA;

EID: 18144445605     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1998.5309     Document Type: Article

References (29)

1. Ahmadian, A. Ren, Z. Williams, C. Pontén, F. Odeberg, J. Pontén, J. Uhlén, M. Lundeberg, J. 1998, Genetic instability in the 9q22.3 region is a late event in the development of squamous cell carcinoma.
2. Bellefroid E. J., Lecocq P. J., Benhida A., Poncelet D. A., Belayew A., Martial J. A. The human genome contains hundreds of genes coding for finger proteins of the Krüppel type. DNA. 8:1989;377-387.
3. Bellefroid E. J., Marine J. C., Ried T., Lecocq P. J., Riviere M., Amemiya C., Poncelet D. A., Coulie P. G., de Jong P., Szpirer C. Clustered organization of homologous KRAB zinc-finger genes with enhanced expression in human T lymphoid cells. EMBO J. 12:1993;1363-1374.
4. Bellefroid E. J., Poncelet D. A., Lecocq P. J., Revelant O., Martial J. A. The evolutionarily conserved Kruppel-associated box domain defines a subfamily of eukaryotic multifingered proteins. Proc. Natl. Acad. Sci. USA. 88:1991;3608-3612.
5. Blennow E., Telenius H., de Vos D., Larsson C., Henriksson P., Johansson O., Carter N. P., Nordenskjöld M. Tetrasomy 15q: Two marker chromosomes with no detectable alpha-satellite DNA. Am. J. Hum. Genet. 54:1994;877-883.
6. Chidambaram A., Gailani M., Gerrard B., Stewart C., Goldstein A., Chumakov I., Bale A. E., Dean M. Characterization of a YAC contig containing the NBCCS locus and a novel Kruppel-type zinc finger sequence on chromosome segment 9q22.3. Genes Chromosomes Cancer. 18:1997;212-218.
7. Chomczynski P., Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162:1987;156-159.
8. Eklund L. K., Holmberg E., Undén A. B., Lundh-Rozell B., Ståhle-Bäckdahl M., Zaphiropoulos P. G., Toftgård R., Söderkvist P. Mutation analysis of the human homologue of Drosophila patched (PTCH) and the xeroderma pigmentosum complementation group A (XPA) genes in squamous cell carcinomas of the skin. Mol. Carcinogen. 21:1998;87-92.
9. Friedman J. R., Fredericks W. J., Jensen D. E., Speicher D. W., Huang X. P., Neilson E. G., Rauscher F. J. KAP-1, a novel corepressor for the highly conserved KRAB repression domain. Genes Dev. 10:1996;2067-2078.
10. Gailani M. R., Stahle-Backdahl M., Leffell D. J., Glynn M., Zaphiropoulos P. G., Pressman C., Unden A. B., Dean M., Brash D. E., Bale A. E., Toftgård R. The role of the human homologue of Drosophila patched in sporadic basal cell carcinomas. Nat. Genet. 14:1996;78-81.
11. Grondin B., Bazinet M., Aubry M. The KRAB zinc finger gene ZNF74 encodes an RNA-binding protein tightly associated with the nuclear matrix. J. Biol. Chem. 271:1996;15458-15467.
12. Hahn H., Wicking C., Zaphiropoulous P. G., Gailani M. R., Shanley S., Chidambaram A., Vorechovsky I., Holmberg E., Unden A. B., Gillies S., Negus K., Smyth I., Pressman C., Leffell D. J., Gerrard B., Goldstein A. M., Dean M., Toftgård R., Chenevix-Trench G., Wainwright B., Bale A. E. Mutations of the human homolog of Drosophila patched in the nevoid basal cell carcinoma syndrome. Cell. 85:1996;841-851.
13. Hedrum A., Pontén F., Ren Z., Lundeberg J., Pontén J., Uhlén M. Sequence-based analysis of the human p53 gene based on microdissection of tumor biopsy samples. Biotechniques. 17:1994;118-119.
14. Holmberg E., Rozell B. L., Toftgård R. Differential allele loss on chromosome 9q22.3 in human non-melanoma skin cancer. Br. J. Cancer. 74:1996;246-250.
15. Hoovers J. M., Mannens M., John R., Bliek J., van Heyningen V., Porteous D. J., Leschot N. J., Westerveld A., Little P. F. High-resolution localization of 69 potential human zinc finger protein genes: A number are clustered. Genomics. 12:1992;254-263.
16. Huebner K., Druck T., Croce C. M., Thiesen H. J. Twenty-seven nonoverlapping zinc finger cDNAs from human T cells map to nine different chromosomes with apparent clustering. Am. J. Hum. Genet. 48:1991;726-740.
17. Hultman T., Bergh S., Moks T., Uhlén M. Bidirectional solid-phase sequencing of in vitro-amplified plasmid DNA. Biotechniques. 10:1991;84-93.
18. Klug A., Schwabe J. W. Protein motifs. 5. Zinc fingers. FASEB J. 9:1995;597-604.
19. Kozak M. An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs. Nucleic Acids Res. 15:1987;8125-8148.
20. Lange R., Christoph A., Thiesen H. J., Vopper G., Johnson K. R., Lemaire L., Plomann M., Cremer H., Barthels D., Heinlein U. A. Developmentally regulated mouse gene NK10 encodes a zinc finger repressor protein with differential DNA-binding domains. DNA Cell Biol. 14:1995;971-981.
21. Pontén F., Berg C., Ahmadian A., Ren Z. P., Nister M., Lundeberg J., Uhlén M., Pontén J. Molecular pathology in basal cell cancer with p53 as a genetic marker. Oncogene. 15:1997;1059-1067.
22. Povey S., Attwood J., Chadwick B., Frezal J., Haines J. L., Knowles M., Kwiatkowski D. J., Olopade O. I., Slaugenhaupt S., Spurr N. K., Smith M., Steel K., White J. A., Pericak-Vance M. A. Report on the Fifth International Workshop on Chromosome 9 held at Eynsham, Oxfordshire, UK, September 4-6, 1996. Ann. Hum. Genet. 61:1997;183-206.
23. Røsok Ø., Odeberg J., Rode M., Stokke T., Funderud S., Smeland E., Lundeberg J. Solid-phase method for differential display of genes expressed in hematopoietic stem cells. BioTechniques. 21:1996;114-121.
24. --+. Blood. 84:1994;1473-1481.
25. Sambrook J., Fritsch E., Maniatis T. Molecular Cloning - A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
26. Shanley S. M., Dawkins H., Wainwright B. J., Wicking C., Heenan P., Eldon M., Searle J., Chenevix-Trench G. Fine deletion mapping on the long arm of chromosome 9 in sporadic and familial basal cell carcinomas. Hum. Mol. Genet. 4:1995;129-133.
27. Tommerup N., Vissing H. Isolation and fine mapping of 16 novel human zinc finger-encoding cDNAs identify putative candidate genes for developmental and malignant disorders. Genomics. 27:1995;259-264.
28. Witzgall R., O'Leary E., Gessner R., Ouellette A. J., Bonventre J. V. Kid-1, a putative renal transcription factor: Regulation during ontogeny and in response to ischemia and toxic injury. Mol. Cell. Biol. 13:1993;1933-1942.
29. Witzgall R., O'Leary E., Leaf A., Onaldi D., Bonventre J. V. The Krüppel-associated box-A (KRAB-A) domain of zinc finger proteins mediates transcriptional repression. Proc. Natl. Acad. Sci. USA. 91:1994;4514-4518.