SH3-like fold proteins are structurally conserved and functionally divergent

Current Protein and Peptide Science

Volumn 6, Issue 2, 2005, Pages 143-150

  Kishan, K V Radha ^a   Agrawal, Vishal ^a  

^a INSTITUTE OF MICROBIAL TECHNOLOGY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

LIGAND; OLIGONUCLEOTIDE; PEPTIDE; PROTEIN SH2; PROTEIN SH3; RNA; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; BETA SHEET; DATA BASE; LIGAND BINDING; PROTEIN CONFORMATION; PROTEIN DNA BINDING; PROTEIN FOLDING; PROTEIN FUNCTION; REVIEW; RNA BINDING; SRC HOMOLOGY DOMAIN;

AMINO ACID SEQUENCE; CONSERVED SEQUENCE; HUMANS; LIGANDS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN FOLDING; SEQUENCE HOMOLOGY, AMINO ACID; SRC HOMOLOGY DOMAINS; VARIATION (GENETICS);

EID: 18144389840     PISSN: 13892037     EISSN: None     Source Type: Journal    
DOI: 10.2174/1389203053545444     Document Type: Review

References (39)

1. Kuriyan, J. and Cowbum, D. (1993) Curr. Opin. Struct. Biol. 3, 828-837.
2. Musacchio, A., Gibson, T., Lehto, V.P. and Saraste, M. ( 1992) FEBS Lett. 307, 55-61.
3. Ciechetti, P., Mayer, B.J., Theil, G. and Baltimore, D. (1992) Science 257, 803-806.
4. Yu, H., Rosen, M.K., Shin, T.B., Seidel-Duggan, C., Brugge, J.S. and Schreiber, S.L. (1992) Science 258, 1665-1668.
5. Feng, S., Chen, J.K., Yu, H., Simon, J.A. and Schreiber, S.L. (1994) Science 266, 1241-1247.
6. Musacchio, A., Noble, M., Pauptit, R., Wierenga, R.K. and Saraste, M. (1992) Nature 359, 851-855.
7. Pohl, E., Holmes, R.K. and Hol, W.G.J. (1999) J. Mol. Biol. 292, 653-667.
8. Agrawal, V. and Kishan, K.V.R. (2001) BMC Struct. Biol. 1, 5.
9. Conte, L.L., Ailey, B., Hubbard, T.J.P., Brenner, S.E., Murzin, A.G. and Chothia, C. (2002) Nucl. Acids Res. 28, 257-259.
10. Orengo, C.A., Michie, A.D., Jones, S., Jones, D.T., Swindells, M.B. and Thornton, J.M. (1997) Structure 5, 1093-1108.
11. Holm, L. and Sander, C. (1993) J. Mol. Biol. 233, 123-138.
12. Wierenga, R.K. (2001) FEBS Lett. 492, 193-198.
13. Copley, R.R. and Bork, P.J. (2000) J. Mol. Biol. 303, 627-640.
14. Burke, D.F., Deane, C.M., Nagarajaram, H.A., Campillo, N., Martin-Martinez, M., Mendes, J., Molina, F., Perry, J., Reddy, B.V., Soares, C.M., Steward, R.E., Williams, M., Carrondo, M.A., Blundell, T.L. and Mizuguchi, K. (1999) Proteins Suppl. 3, 55-60.
15. Gao, Y-G., Su, S-Y., Robinson, H., Padmanabhan, S., Lim, L., McCrary, B.S., Edmondson, S.P., Shriver, J.W. and Wang, A.H-J. (1998) Nat. Struct. Biol. 5, 782-786.
16. Lodi, P.J., Ernst, J.A., Kuszewski, J., Hickman, A.B., Engelman, A., Craigie, R., Clore, G.M. and Gronenborn, A.M. (1995) Biochemistry 34, 9826-9833.
17. Loris, R., Dao-Thi, M-H., Babassi, E.M., Melderen, L.V., Poortmans, F., Liddington, R., Couturier, M. and Wyns, L. (1999) J. Mol. Biol. 285, 1667-1677.
18. Kampranis, S.C., Howells, A.J. and Maxwell, A. (1999) J. Mol. Biol. 293, 733-744.
19. Nakagawa, A., Nakashima, T., Taniguchi, M., Hosaka, H., Kimura, M. and Tanak, I. (1999) EMBO J. 18, 1459-1467.
20. Davies, C., White, S.W. and Ramakrishnan, V. (1996) Structure 4, 55-66.
21. Kambach, C., Walke, S., Young, R., Avis, J.M., Fortelle, E., Raker, V.A., Luhrmann, R., Li, J. and Nagai, K. (1999) Cell 96, 375-387.
22. Toro, I., Thore, S., Mayer, C., Basquin, J., Seraphin, B. and Suck, D. (2001) EMBO J. 20, 2293-2303.
23. Falzone, C.J., Kao, Y-H., Zhao, J., Bryant, D.A. and Lecomte, J.T.J. (1994) Biochemistry 33, 6052-6062.
24. Klukas, O., Schubert, W-D., Jordan, P., Krauss, N., Fromme, P., Witt, H.T. and Saenger, W.J. (1999) J. Biol. Chem. 274, 7351-7360.
25. Dai, S., Schwendtmayer, C., Schurmann, P., Ramaswamy, S. and Eklund, H. (2000) Science 287, 655-658.
26. Huang, W., Jia, J., Cummings, J., Nelson, M., Schneider, G. and Lindqvist, Y. (1997) Structure 5, 691-699.
27. Narayana, N., Matthews, D.A., Howell, E.E. and Xuong, N-h. (1995) Nat. Struct. Biol. 2, 1018-1025.
28. Lutzke, R.A.P., Vink, C. and Plasterk, R.H.A. (1994) Nucl. Acids Res. 22, 4125-4121.
29. Lutzke, R.A.P. and Plasterk, R.H.A. (1998) J. Virol. 72, 4841-4848.
30. Collins, B.M., Harrop, S.J., Cornfeld, G.D., Dawes, I.W., Curmi, P.M.G. and Mabbutt, B.C. (2001) J. Mol. Biol. 309, 915-923.
31. Mura, C., Cascio, D., Sawaya, M.R. and Eisenberg, D.S. ( 2001) Proc. Natl. Acad. Sci. USA 98, 5532-5537.
32. Wang, G., Wylie, G.P., Twigg, P.D., Caspar, D.L.D., Murphy, J.R. and Logan, T.M. (1999) Proc. Natl. Acad. Sci. USA 96, 6119-6124.
33. Essen, L.O., Perisic, O., Cheung, R., Katan, M. and Williams, R.L. (1996) Nature 380, 595-602.
34. Stuart, D.I., Levine, M., Muirhead, H. and Stammers, D.K. ( 1979) J. Mol. Biol. 134, 109-142.
35. Larsen, T.M., Laughlin, L.T., Holden, H.M., Rayment I. and Reed, G.H. (1994) Biochemistry 33, 6301-6309.
36. Larsen, T.M., Benning, M.M., Rayment I. and Reed, G.H. ( 1998) Biochemistry 37, 6247-6255.
37. Paetzel, M., Dalbey, R.E. and Strynadka, N.C.J. (1998) Nature 396, 186-190.
38. Jeanmougin, F., Thompson, J.D., Gouy, M., Higgins, D.G. and Gibson, T.J. (1998) Trends Biochem. Sci. 23, 403-405.
39. Pessi, A., Bianchi, E., Crameri, A., Venturini, S., Tramontano, A. and Sollazzo, M. (1993) Nature 362, 367-369.