South West Indian Ocean islands tomato begomovirus populations represent a new major monopartite begomovirus group

Journal of General Virology

Volumn 86, Issue 5, 2005, Pages 1533-1542

  Delatte, Hélène ^a   Martin, Darren P ^b   Naze, Florence ^a   Goldbach, Rob ^c   Reynaud, Bernard ^a   Peterschmitt, Michel ^d   Lett, Jean Michel ^a  

^a UNIVERSITÉ DE LA RÉUNION   (France)

^b UNIVERSITY OF CAPE TOWN   (South Africa)

^c WAGENINGEN UNIVERSITY   (Netherlands)

^d CIRAD   (France)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS DNA;

ARTICLE; BEGOMOVIRUS; CONTROLLED STUDY; DNA SEQUENCE; INDIAN OCEAN; MADAGASCAR; MAYOTTE; MOLECULAR CLONING; MONOPHYLY; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT DISEASE; PLANT VIRUS; PRIORITY JOURNAL; REUNION; SEQUENCE ANALYSIS; TOMATO; UNINDEXED SEQUENCE; VIRUS GENOME; VIRUS ISOLATION; VIRUS RECOMBINANT; VIRUS TRANSMISSION;

ANIMALS; DISEASE TRANSMISSION; DISEASE VECTORS; DNA, VIRAL; GEMINIVIRIDAE; HEMIPTERA; INDIAN OCEAN ISLANDS; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; RECOMBINATION, GENETIC; SEQUENCE ANALYSIS, DNA;

BEGOMOVIRUS; BEMISIA TABACI; LYCOPERSICON ESCULENTUM; TOMATO YELLOW LEAF CURL VIRUS;

EID: 18144380966     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.80805-0     Document Type: Article

References (37)

1. Berrie, L. C., Rybicki, E. P. & Rey, M. E. C. (2001). Complete nucleotide sequence and host range of South African cassava mosaic virus: further evidence for recombinations amongst begomoviruses. J Gen Virol 82, 53-58.
2. 2 and stored under different conditions. Neth J Plant Pathol 83, 217-220.
3. Briddon, R. W., Bull, S. E., Mansoor, S., Amin, I. & Markham, P. G. (2002). Universal primers for the PCR-mediated amplification of DNA β: a molecule associated with some monopartite begomoviruses. Mol Biotechnol 20, 315-318.
4. Cohen, S. & Antignus, Y. (1994). Tomato yellow leaf curl virus (TYLCV), a whitefly-borne geminivirus of tomatoes. Adv Dis Vector Res 10, 259-288.
5. Czosnek, H. & Laterrot, H. (1997). A worldwide survey of tomato yellow leaf curl viruses. Arch Virol 142, 1391-1406.
6. Delatte, H., Reynaud, B., Lett, J. M., Peterschmitt, M., Granier, M., Ravololonandrianina, J. & Goldbach, W. R. (2002). First molecular identification of a begomovirus isolated from tomato in Madagascar. Plant Dis 86, 1404.
7. Delatte, H., Dalmon, A., Rist, D., Soustrade, I., Wuster, G., Lett, J. M., Goldbach, R. W., Peterschmitt, M. & Reynaud, B. (2003). Tomato yellow leaf curl virus can be acquired and transmitted by Bemisia tabaci (Gennadius) from tomato fruit. Plant Dis 87, 1297-1300.
8. Delatte, H., Holota, H., Naze, F., Peterschmitt, M., Reynaud, B. & Lett, J. M. (2005a). The presence of both recombinant and non recombinant strains of Tomato yellow leaf curl virus on tomato in Réunion Island. Plant Pathol 54, 000-000.
9. Delatte, H., Reynaud, B., Granier, M., Thornary, L., Lett, J. M., Goldbach, R. & Peterschmitt, M. (2005b). A new silverleaf-inducing biotype Ms of Bemisia tabaci (Hemiptera: Aleyrodidae) indigenous of the islands of the south-west Indian Ocean. Bull Entomol Res 95, 29-35.
10. Ditta, G., Stanfield, S., Corbin, D. & Helsinki, D. R. (1980). Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti. Proc Natl Acad Sci U S A 77, 7347-7351.
11. Fauquet, C. & Fargette, D. (1990). African cassava mosaic virus: etiology, epidemiology and control. Plant Dis 74, 404-411.
12. Fauquet, C. M. & Stanley, J. (2003). Geminivirus classification and nomenclature: progress and problems. Ann Appl Biol 142, 165-189.
13. Fauquet, C. M., Bisaro, D. M., Briddon, R. W., Brown, J. K., Harrison, B. D., Rybicki, E. P., Stenger, D. C. & Stanley, J. (2003). Revision of taxonomic criteria for species demarcation in the family Geminiviridae, and an updated list of begomovirus species. Arch Virol 148, 405-421.
14. Felsenstein, J. (1989). PHYLIP - Phylogeny inference package (version 3.2). Cladistics 5, 164-166.
15. Gibbs, M. J., Armstrong, J. S. & Gibbs, A. J. (2000). Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16, 573-582.
16. Laufs, J., Traut, W., Heyraud, F., Matzeit, V., Rogers, S. G., Schell, J. & Gronenborn, B. (1995). In vitro cleavage and joining at the viral origin of replication by the replication protein of the tomato yellow leaf curl virus. Proc Natl Acad Sci U S A 92, 3879-3883.
17. Lett, J. M., Delatte, H., Naze, F., Reynaud, B., Abdoul-Karime, A. L. & Peterschmitt, M. (2004). A new tomato begomovirus from Mayotte. Plant Dis 88, 681.
18. Martin, D. & Rybicki, E. (2000). RDP: detection of recombination amongst aligned sequences. Bioinformatics 16, 562-563.
19. Martin, D. P., Posada, D., Crandall, K. A. & Williamson, C. (2005a). A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res Hum Retroviruses 21, 98-102.
20. Martin, D. P., Williamson, C. & Posada, D. (2005b). RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21, 260-262.
21. Moriones, E. & Navas-Castillo, J. (2000). Tomato yellow leaf curl virus, an emerging virus complex causing epidemics worldwide. Virus Res 71, 123-134.
22. Navot, N., Pichersky, E., Zeidan, M., Zamir, D. & Czosnek, H. (1991). Tomato yellow leaf curl virus: a whitefly-transmitted geminivirus with a single genomic component. Virology 185, 151-161.
23. Padidam, M., Sawyer, S. & Fauquet, C. M. (1999). Possible emergence of new geminiviruses by frequent recombination. Virology 265, 218-225.
24. Patel, V. P., Rojas, M. R., Paplomatas, E. J. & Gilbertson, R. L. (1993). Cloning biologically active geminivirus DNA using PCR and overlapping primers. Nucleic Acids Res 21, 1325-1326.
25. Paximadis, M. & Rey, M. E. C. (2001). Genome organization of Tobacco leaf curl Zimbabwe virus, a new distinct monopartite begomovirus associated with subgenomic defective DNA molecules. J Gen Virol 82, 3091-3097.
26. Peterschmitt, M., Granier, M., Mekoud, R., Dalmon, A., Gambin, O., Vayssières, J. F. & Reynaud, B. (1999). First report of tomato yellow leaf curl virus in Réunion Island. Plant Dis 83, 303.
27. Pico, B., Diez, M.-J. & Nuez, F. (1996). Viral diseases causing the greatest economic losses to the tomato crop. II. The tomato yellow leaf curl virus - a review. Sci Hortic 67, 151-196.
28. Polston, J. E., Hiebert, E., McGovern, R. J., Stansly, P. A. & Schuster, D. J. (1993). Host range of tomato mottle virus, a new geminivirus infecting tomato in Florida. Plant Dis 77, 1181-1184.
29. Polston, J. E., McGovern, R. J. & Brown, L. G. (1999). Introduction of tomato yellow leaf curl virus in Florida and implications for the spread of this and other geminiviruses of tomato. Plant Dis 83, 984-988.
30. Ranomenjanahary, S., Rabindran, R. & Robinson, D. J. (2002). Occurrence of three distinct begomoviruses in cassava in Madagascar. Ann Appl Biol 140, 315-318.
31. Reynaud, B., Wuster, G., Delatte, H., Soustrade, I., Lett, J. M., Gambin, O. & Peterschmitt, M. (2003). Les maladies à bégomovirus chez la tomate dans les départements français d'Outre-Mer. Le Tomato yellow leaf curl virus (TYLCV) à la Réunion. Phytoma 562, 13-17.
32. Rojas, M. R., Gilbertson, R. L., Russel, D. R. & Maxwell, D. P. (1993). Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminivirus. Plant Dis 77, 340-347.
33. Smith, J. M. (1992). Analyzing the mosaic structure of genes. J Mol Evol 34, 126-129.
34. Stonor, J., Hart, P., Gunther, M., DeBarro, P. & Rezaian, M. A. (2003). Tomato leaf curl geminivirus in Australia: occurrence, detection, sequence diversity and host range. Plant Pathol 52, 379-388.
35. Swanson, M. M. & Harrison, B. D. (1994). Properties, relationships and distribution of cassava mosaic geminiviruses. Trop Sci 34, 15-25.
36. Umaharan, P., Padidam, M., Phelps, R. H., Beachy, R. N. & Fauquet, C. M. (1998). Distribution and diversity of geminiviruses in Trinidad and Tobago. Phytopathology 88, 1262-1268.
37. Wyatt, S. D. & Brown, J. K. (1996). Detection of subgroup III geminivirus isolates in leaf extracts by degenerate primers and polymerase chain reaction. Phytopathology 86, 1288-1293.