메뉴 건너뛰기




Volumn 61, Issue 3, 2005, Pages 369-379

An improved method for the automated enumeration of fluorescently labelled bacteria in human faeces

Author keywords

Automisation; FISH; Image analysis

Indexed keywords

FLUORESCENT DYE; INDOLE DERIVATIVE; OLIGONUCLEOTIDE; RNA 16S;

EID: 17644369669     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2004.12.014     Document Type: Article
Times cited : (39)

References (22)
  • 1
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • R.I. Amann, and B.J. Binder Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations Appl. Environ. Microbiol. 56 1990 1919 1925
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • R.I. Amann, and W. Ludwig Phylogenetic identification and in situ detection of individual microbial cells without cultivation Microbiol. Rev. 59 1995 143 169
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2
  • 3
    • 0028929072 scopus 로고
    • Fully automatic determination of soil bacterium numbers, cell volumes, and frequencies of dividing cells by confocal laser scanning microscopy and image analysis
    • J. Bloem, and M. Veninga Fully automatic determination of soil bacterium numbers, cell volumes, and frequencies of dividing cells by confocal laser scanning microscopy and image analysis Appl. Environ. Microbiol. 61 3 1995 926 936
    • (1995) Appl. Environ. Microbiol. , vol.61 , Issue.3 , pp. 926-936
    • Bloem, J.1    Veninga, M.2
  • 4
    • 0035653625 scopus 로고    scopus 로고
    • Cultivation-independent, semiautomatic determination of absolute bacterial cell numbers in environmental samples by fluorescence in situ hybridization
    • H. Daims, and N.B. Ramsing Cultivation-independent, semiautomatic determination of absolute bacterial cell numbers in environmental samples by fluorescence in situ hybridization Appl. Environ. Microbiol. 67 12 2001 5810 5818
    • (2001) Appl. Environ. Microbiol. , vol.67 , Issue.12 , pp. 5810-5818
    • Daims, H.1    Ramsing, N.B.2
  • 5
    • 0034976949 scopus 로고    scopus 로고
    • Faecal elastase-1: Lyophilization of stool samples prevents false low results in diarrhoea
    • B. Fischer, and S. Hoh Faecal elastase-1: lyophilization of stool samples prevents false low results in diarrhoea Scand. J. Gastroenterol. 36 7 2001 771 774
    • (2001) Scand. J. Gastroenterol. , vol.36 , Issue.7 , pp. 771-774
    • Fischer, B.1    Hoh, S.2
  • 6
    • 0031692488 scopus 로고    scopus 로고
    • Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes
    • A.H. Franks, and H.J.M. Harmsen Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes Appl. Environ. Microbiol. 64 1998 3336 3345
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3336-3345
    • Franks, A.H.1    Harmsen, H.J.M.2
  • 7
    • 0031789907 scopus 로고    scopus 로고
    • Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes
    • B.M. Fuchs, and G. Wallner Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes Appl. Environ. Microbiol. 64 12 1998 4973 4982
    • (1998) Appl. Environ. Microbiol. , vol.64 , Issue.12 , pp. 4973-4982
    • Fuchs, B.M.1    Wallner, G.2
  • 8
    • 0035145060 scopus 로고    scopus 로고
    • In situ accessibility of Escherichia coli 23S rRNA to fluorescently labeled oligonucleotide probes
    • B.M. Fuchs, and K. Syutsubo In situ accessibility of Escherichia coli 23S rRNA to fluorescently labeled oligonucleotide probes Appl. Environ. Microbiol. 67 2 2001 961 968
    • (2001) Appl. Environ. Microbiol. , vol.67 , Issue.2 , pp. 961-968
    • Fuchs, B.M.1    Syutsubo, K.2
  • 9
    • 0023958997 scopus 로고
    • Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells
    • S.J. Giovannoni, and E.F. DeLong Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells J. Bacteriol. 170 2 1988 720 726
    • (1988) J. Bacteriol. , vol.170 , Issue.2 , pp. 720-726
    • Giovannoni, S.J.1    Delong, E.F.2
  • 10
    • 0036275614 scopus 로고    scopus 로고
    • Extensive set of 16S rRNA-based probes for detection of bacteria in human feces
    • H.J. Harmsen, and G.C. Raangs Extensive set of 16S rRNA-based probes for detection of bacteria in human feces Appl. Environ. Microbiol. 68 6 2002 2982 2990
    • (2002) Appl. Environ. Microbiol. , vol.68 , Issue.6 , pp. 2982-2990
    • Harmsen, H.J.1    Raangs, G.C.2
  • 11
    • 0032782895 scopus 로고    scopus 로고
    • Development and validation of an automated, microscopy-based method of enumeration of groups of intestinal bacteria
    • G.J. Jansen, and A.C. Wildeboer-Veloo Development and validation of an automated, microscopy-based method of enumeration of groups of intestinal bacteria J. Microbiol. Methods 37 1999 215 221
    • (1999) J. Microbiol. Methods , vol.37 , pp. 215-221
    • Jansen, G.J.1    Wildeboer-Veloo, A.C.2
  • 12
    • 0034891924 scopus 로고    scopus 로고
    • Oligofructose and long-chain inulin: Influence on the gut microbial ecology of rats associated with a human faecal flora
    • B. Kleessen, and L. Hartmann Oligofructose and long-chain inulin: influence on the gut microbial ecology of rats associated with a human faecal flora Br. J. Nutr. 86 2 2001 291 300
    • (2001) Br. J. Nutr. , vol.86 , Issue.2 , pp. 291-300
    • Kleessen, B.1    Hartmann, L.2
  • 13
    • 0032735725 scopus 로고    scopus 로고
    • Effects of inulin on faecal bifidobacteria in human subjects
    • H.-P. Kruse, and B. Kleessen Effects of inulin on faecal bifidobacteria in human subjects Br. J. Nutr. 82 1999 375 382
    • (1999) Br. J. Nutr. , vol.82 , pp. 375-382
    • Kruse, H.-P.1    Kleessen, B.2
  • 14
    • 0029162158 scopus 로고
    • Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples
    • P.S. Langendijk, and F. Schut Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples Appl. Environ. Microbiol. 61 8 1995 3069 3075
    • (1995) Appl. Environ. Microbiol. , vol.61 , Issue.8 , pp. 3069-3075
    • Langendijk, P.S.1    Schut, F.2
  • 15
    • 0027134061 scopus 로고
    • Use of multiple 16S rRNA-targeted fluorescent probes to increase signal strength and measure cellular RNA from natural planktonic bacteria
    • S.H. Lee, and C. Malone Use of multiple 16S rRNA-targeted fluorescent probes to increase signal strength and measure cellular RNA from natural planktonic bacteria Mar. Ecol., Prog. Ser. 101 1993 193 201
    • (1993) Mar. Ecol., Prog. Ser. , vol.101 , pp. 193-201
    • Lee, S.H.1    Malone, C.2
  • 16
    • 0027572577 scopus 로고
    • Cyanine dye labeling reagents: Sulfoindocyanine succinimidyl esters
    • R.B. Mujumdar, and L.A. Ernst Cyanine dye labeling reagents: sulfoindocyanine succinimidyl esters Bioconjug. Chem. 4 2 1993 105 111
    • (1993) Bioconjug. Chem. , vol.4 , Issue.2 , pp. 105-111
    • Mujumdar, R.B.1    Ernst, L.A.2
  • 17
    • 3342952142 scopus 로고    scopus 로고
    • Molecular methods for the analysis of gut microbiota
    • P. Namsolleck, and R. Thiel Molecular methods for the analysis of gut microbiota Microb. Ecol. Health Dis. 16 2-3 2004 71 85
    • (2004) Microb. Ecol. Health Dis. , vol.16 , Issue.2-3 , pp. 71-85
    • Namsolleck, P.1    Thiel, R.2
  • 18
    • 0038221073 scopus 로고    scopus 로고
    • Automated enumeration of groups of marine picoplankton after fluorescence in situ hybridization
    • J. Pernthaler, and A. Pernthaler Automated enumeration of groups of marine picoplankton after fluorescence in situ hybridization Appl. Environ. Microbiol. 69 5 2003 2631 2637
    • (2003) Appl. Environ. Microbiol. , vol.69 , Issue.5 , pp. 2631-2637
    • Pernthaler, J.1    Pernthaler, A.2
  • 19
    • 0036132828 scopus 로고    scopus 로고
    • Automated image analysis and in situ hybridization as tools to study bacterial populations in food resources, gut and cast of Lumbricus terrestris L
    • F. Schönholzer, and D. Hahn Automated image analysis and in situ hybridization as tools to study bacterial populations in food resources, gut and cast of Lumbricus terrestris L J. Microbiol. Methods 48 1 2002 53 68
    • (2002) J. Microbiol. Methods , vol.48 , Issue.1 , pp. 53-68
    • Schönholzer, F.1    Hahn, D.2
  • 20
    • 0032793537 scopus 로고    scopus 로고
    • Quantification of the flavonoid-degrading bacterium Eubacterium ramulus in human fecal samples with a species-specific oligonucleotide hybridization probe
    • R. Simmering, and B. Kleessen Quantification of the flavonoid-degrading bacterium Eubacterium ramulus in human fecal samples with a species-specific oligonucleotide hybridization probe Appl. Environ. Microbiol. 65 1999 3705 3709
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3705-3709
    • Simmering, R.1    Kleessen, B.2
  • 21
    • 0032755259 scopus 로고    scopus 로고
    • Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
    • A. Suau, and R. Bonnet Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut Appl. Environ. Microbiol. 65 11 1999 4799 4807
    • (1999) Appl. Environ. Microbiol. , vol.65 , Issue.11 , pp. 4799-4807
    • Suau, A.1    Bonnet, R.2
  • 22
    • 0034129592 scopus 로고    scopus 로고
    • Analysis of the fecal microflora of human subjects consuming a probiotic product containing Lactobacillus rhamnosus DR20
    • G.W. Tannock, and K. Munro Analysis of the fecal microflora of human subjects consuming a probiotic product containing Lactobacillus rhamnosus DR20 Appl. Environ. Microbiol. 66 6 2000 2578 2588
    • (2000) Appl. Environ. Microbiol. , vol.66 , Issue.6 , pp. 2578-2588
    • Tannock, G.W.1    Munro, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.